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410 Publikationen

2019 | Herausgeber Sammelwerk | Veröffentlicht | PUB-ID: 2935998
Setubal, J. C., Stoye, J., and Dutilh, B. E. eds. (2019). Computational Methods for Microbiome Analysis. Frontiers Research Topics, Lausanne: Frontiers Media.
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2019 | Preprint | PUB-ID: 2935604
Wittler, R. (2019). Alignment- and reference-free phylogenomics with colored de-Bruijn graphs. arXiv:1905.04165.
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2019 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2932883
Dörr, D., and Stoye, J. (2019). “A Perspective on Comparative and Functional Genomics” in Bioinformatics and Phylogenetics, Warnow, T. ed. Computational Biology, vol. 29, (Cham: Springer ), 361-372.
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933161
Hassan, H., and Shanak, S. (2019). GOTrapper. A tool to navigate through branches of gene ontology hierarchy. BMC Bioinformatics 20:20.
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932884
Oey, H., Zakrzewski, M., Gravermann, K., Young, N. D., Korhonen, P. K., Gobert, G. N., Nawaratna, S., Hasan, S., Martínez, D. M., You, H., et al. (2019). Whole-genome sequence of the bovine blood fluke Schistosoma bovis supports interspecific hybridization with S. haematobium. PLOS Pathogens 15:e1007513.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919005
Schulz, T., Stoye, J., and Dörr, D. (2018). GraphTeams. A method for discovering spatial gene clusters in Hi-C sequencing data. BMC Genomics 19:308.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919006
Rubert, D., Hoshino, E. A., Dias Vieira Braga, M., Stoye, J., and Martinez, F. H. V. (2018). Computing the family-free DCJ similarity. BMC Bioinformatics 19:152.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918481
Luhmann, N., Chauve, C., Stoye, J., and Wittler, R. (2018). Scaffolding of Ancient Contigs and Ancestral Reconstruction in a Phylogenetic Framework. IEEE/ACM Transactions on Computational Biology and Bioinformatics 15, 2094-2100.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932754
Bhatia, S., Feijão, P., and Francis, A. R. (2018). Position and Content Paradigms in Genome Rearrangements. The Wild and Crazy World of Permutations in Genomics. BULLETIN OF MATHEMATICAL BIOLOGY 80, 3227-3246.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919346
Hagenfeld, D., Koch, R., Jünemann, S., Prior, K., Harks, I., Eickholz, P., Hoffmann, T., Kim, T. - S., Kocher, T., Meyle, J., et al. (2018). Do we treat our patients or rather periodontal microbes with adjunctive antibiotics in periodontal therapy? A 16S rDNA microbial community analysis. PLOS ONE 13:e0195534.
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2018 | Bielefelder E-Dissertation | PUB-ID: 2918485
Holley, G. (2018). Pan-genome Search and Storage. Bielefeld: Universität Bielefeld.
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2018 | Bielefelder E-Dissertation | PUB-ID: 2919356
Willing, E. (2018). On Distance and Sorting of the Double Cut-and-Join and the Inversion-*indel* Model. Bielefeld: Universität Bielefeld.
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2018 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2930445
Cunha, L., Diekmann, Y., Kowada, L., and Stoye, J. (2018). “Identifying Maximal Perfect Haplotype Blocks” in Proceedings of BSB 2018 LNBI, vol. 11228, (Springer Verlag), 26-37.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930268
Holley, G., Wittler, R., Stoye, J., and Hach, F. (2018). Dynamic Alignment-Free and Reference-Free Read Compression. JOURNAL OF COMPUTATIONAL BIOLOGY 25, 825-836.
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2018 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2913921
Zekic, T., Holley, G., and Stoye, J. (2018). “Pan-genome Storage and Analysis Techniques” in Comparative Genomics. Methods and Protocols, Setubal, J. C., Stadler, P., and Stoye, J. eds. Methods in Molecular Biology, vol. 1704, (New York: Springer Verlag), 29-53.
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2018 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2913922
Dörr, D., Feijão, P., and Stoye, J. (2018). “Family-Free Genome Comparison” in Comparative Genomics: Methods and Protocols, Setubal, J. C., Stadler, P., and Stoye, J. eds. Methods in Molecular Biology, vol. 1704, (New York: Springer Verlag), 331-342.
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2018 | Herausgeber Sammelwerk | Veröffentlicht | PUB-ID: 2913920
Setubal, J. C., Stadler, P., and Stoye, J. eds. (2018). Comparative Genomics: Methods and Protocols. Methods in Molecular Biology, 1704, New York: Springer Verlag.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919012
Jaenicke, S., Albaum, S., Blumenkamp, P., Linke, B., Stoye, J., and Goesmann, A. (2018). Flexible metagenome analysis using the MGX framework. Microbiome 6:76.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2912492
Luhmann, N., Dörr, D., and Chauve, C. (2017). Comparative scaffolding and gap filling of ancient bacterial genomes applied to two ancient Yersinia pestis genomes. Microbial Genomics 3.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913556
Jünemann, S., Kleinbölting, N., Jaenicke, S., Henke, C., Hassa, J., Nelkner, J., Stolze, Y., Albaum, S., Schlüter, A., Goesmann, A., et al. (2017). Bioinformatics for NGS-based metagenomics and the application to biogas research. Journal of Biotechnology 261, 10-23.
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