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412 Publikationen

2013 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2611643
Bergeron, Anne, and Stoye, Jens. “The Genesis of the DCJ Formula”. Models and Algorithms for Genome Evolution. Ed. Cedric Chauve, Nadia El-Mabrouk, and Eric Tannier. Springer Verlag, 2013.Vol. 19. Computational Biology Series. 63-81.
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2013 | Bielefelder E-Dissertation | PUB-ID: 2604883
Blom, Jochen. Comparative genomics on gene and single nucleotide level. Bielefeld: Universitätsbibliothek, 2013.
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2013 | Bielefelder E-Dissertation | PUB-ID: 2594322
Janowski, Sebastian Jan. VANESA - A bioinformatics software application for the modeling, visualization, analysis, and simulation of biological networks in systems biology applications. Bielefeld: Bielefeld University, 2013.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2575361
Krell, Pina, Reuther, Susanne, Fischer, Ute, Keller, Thomas, Weber, Stephan, Gombert, Michael, Schuster, Friedhelm R., Asang, Corinna, Stepensky, Polina, Strahm, Birgit, Meisel, Roland, Stoye, Jens, and Borkhardt, Arndt. “Next-generation-sequencing-spectratyping reveals public T-cell receptor repertoires in pediatric very severe aplastic anemia and identifies a beta chain CDR3 sequence associated with hepatitis-induced pathogenesis”. Haematologica 98.9 (2013): 1388-1396.
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2013 | Lexikoneintrag | Veröffentlicht | PUB-ID: 2577323
Gerlach, Wolfgang, and Stoye, Jens. “Taxonomic classification of metagenomic shotgun sequences with CARMA3”. Encyclopedia of Metagenomics. Ed. Karen E. Nelson. Springer Verlag, 2013.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2566922
Jünemann, Sebastian, Sedlazeck, Fritz Joachim, Prior, Karola, Albersmeier, Andreas, John, Uwe, Kalinowski, Jörn, Mellmann, Alexander, Goesmann, Alexander, von Haeseler, Arndt, Stoye, Jens, and Harmsen, Dag. “Updating benchtop sequencing performance comparison”. Nature Biotechnology 31.4 (2013): 294-296.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2625914
Bergmann, Thorsten, Maeder, U., Fiebich, M., Dickob, M., Nattkemper, Tim Wilhelm, and Anselmetti, Dario. “Categorization of two-photon microscopy images of human cartilage into states of osteoarthritis”. Osteoarthritis And Cartilage 21.8 (2013): 1074-1082.
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2013 | Konferenzband | Veröffentlicht | PUB-ID: 2616537
Aaron Darling and Jens Stoye, eds. “Algorithms in Bioinformatics”. Lecture Notes in Bioinformatics 8126 (2013).
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2611633
Jahn, Katharina, Winter, Sascha, Stoye, Jens, and Böcker, Sebastian. “Statistics for approximate gene clusters”. BMC Bioinformatics 14.Suppl 15: Proc. of RECOMB-CG 2013 (2013): S14.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548236
Schwientek, Patrick, Wendler, Sergej, Neshat, Armin, Eirich, Christina, Rückert, Christian, Klein, Andreas, Wehmeier, Udo F, Kalinowski, Jörn, Stoye, Jens, and Pühler, Alfred. “Comparative RNA-sequencing of the acarbose producer Actinoplanes sp. SE50/110 cultivated in different growth media”. Journal of Biotechnology 167.2 (2013): 166-177.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548286
Luque-Almagro, Víctor M, Acera, Felipe, Igeño, Ma Isabel, Wibberg, Daniel, Roldán, Ma Dolores, Sáez, Lara P, Hennig, Magdalena, Quesada, Alberto, Huertas, Ma José, Blom, Jochen, Merchán, Faustino, Escribano, Ma Paz, Jaenicke, Sebastian, Estepa, Jessica, Guijo, Ma Isabel, Martínez-Luque, Manuel, Macías, Daniel, Szczepanowski, Rafael, Becerra, Gracia, Ramirez, Silvia, Carmona, Ma Isabel, Gutiérrez, Oscar, Manso, Isabel, Pühler, Alfred, Castillo, Francisco, Moreno-Vivián, Conrado, Schlüter, Andreas, and Blasco, Rafael. “Draft whole genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344”. Environmental Microbiology 15.1 (2013): 253-270.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2552092
Wittler, Roland. “Unraveling overlapping deletions by agglomerative clustering”. BMC Genomics 14.Suppl 1 (2013): S12.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529309
Bolzan de Campos, Samanta, Youn, Jung-Won, Farina, Roberto, Jaenicke, Sebastian, Jünemann, Sebastian, Szczepanowski, Rafael, Beneduzi, Anelise, Vargas, Luciano K., Wendisch, Volker F., and Passaglia, Luciane. “Changes in Root Bacterial Communities Associated to Two Different Development Stages of Canola (*Brassica napus* L. var oleifera) Evaluated through Next-Generation Sequencing”. Microbial Ecology 65.3 (2013): 593-601.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2659331
Feijão, Pedro, and Meidanis, Joao. “Extending the Algebraic Formalism for Genome Rearrangements to Include Linear Chromosomes”. IEEE/ACM Transactions on Computational Biology and Bioinformatics 10.4 (2013): 819-831.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529202
Zakrzewski, Martha, Bekel, Thomas, Ander, Christina, Pühler, Alfred, Rupp, Oliver, Stoye, Jens, Schlüter, Andreas, and Goesmann, Alexander. “MetaSAMS - A novel software platform for taxonomic classification, functional annotation and comparative analysis of metagenome datasets”. Journal of Biotechnology 167.2 (2013): 156-165.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2560353
Dörr, Daniel, Gronau, Ilan, Moran, Shlomo, and Yavneh, Irad. “Stochastic errors vs. modeling errors in distance based phylogenetic reconstructions”. Algorithms for Molecular Biology 7.1 (2012): 22.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2512642
Dörr, Daniel, Thévenin, Annelyse, and Stoye, Jens. “Gene family assignment-free comparative genomics”. BMC Bioinformatics 13.Suppl 19: Proc. of RECOMB-CG 2012 (2012): S3.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2498160
Schröder, Jasmin, Maus, Irena, Meyer, Katja, Wördemann, Stephanie, Blom, Jochen, Jaenicke, Sebastian, Schneider, Jessica, Trost, Eva, and Tauch, Andreas. “Complete genome sequence, lifestyle, and multi-drug resistance of the human pathogen Corynebacterium resistens DSM 45100 isolated from blood samples of a leukemia patient”. BMC Genomics 13.1 (2012): 141.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2517239
Hoffmann, Nils, Keck, Matthias, Neuweger, Heiko, Wilhelm, Mathias, Högy, Petra, Niehaus, Karsten, and Stoye, Jens. “Combining peak- and chromatogram-based retention time alignment algorithms for multiple chromatography-mass spectrometry datasets”. BMC Bioinformatics 13.1 (2012): 21.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2512644
Jahn, Katharina, Sudek, Henner, and Stoye, Jens. “Multiple genome comparison based on overlap regions of pairwise local alignments”. BMC Bioinformatics 13.Suppl. 19: Proc. of RECOMB-CG 2012 (2012): S7.
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