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412 Publikationen

2013 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2611643
Bergeron, Anne, and Stoye, Jens. 2013. “The Genesis of the DCJ Formula”. In Models and Algorithms for Genome Evolution, ed. Cedric Chauve, Nadia El-Mabrouk, and Eric Tannier, 19:63-81. Computational Biology Series. Springer Verlag.
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2013 | Bielefelder E-Dissertation | PUB-ID: 2604883
Blom, Jochen. 2013. Comparative genomics on gene and single nucleotide level. Bielefeld: Universitätsbibliothek.
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2013 | Bielefelder E-Dissertation | PUB-ID: 2594322
Janowski, Sebastian Jan. 2013. VANESA - A bioinformatics software application for the modeling, visualization, analysis, and simulation of biological networks in systems biology applications. Bielefeld: Bielefeld University.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2575361
Krell, Pina, Reuther, Susanne, Fischer, Ute, Keller, Thomas, Weber, Stephan, Gombert, Michael, Schuster, Friedhelm R., et al. 2013. “Next-generation-sequencing-spectratyping reveals public T-cell receptor repertoires in pediatric very severe aplastic anemia and identifies a beta chain CDR3 sequence associated with hepatitis-induced pathogenesis”. Haematologica 98 (9): 1388-1396.
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2013 | Lexikoneintrag | Veröffentlicht | PUB-ID: 2577323
Gerlach, Wolfgang, and Stoye, Jens. 2013. “Taxonomic classification of metagenomic shotgun sequences with CARMA3”. In Encyclopedia of Metagenomics, ed. Karen E. Nelson. Springer Verlag.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2566922
Jünemann, Sebastian, Sedlazeck, Fritz Joachim, Prior, Karola, Albersmeier, Andreas, John, Uwe, Kalinowski, Jörn, Mellmann, Alexander, et al. 2013. “Updating benchtop sequencing performance comparison”. Nature Biotechnology 31 (4): 294-296.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2625914
Bergmann, Thorsten, Maeder, U., Fiebich, M., Dickob, M., Nattkemper, Tim Wilhelm, and Anselmetti, Dario. 2013. “Categorization of two-photon microscopy images of human cartilage into states of osteoarthritis”. Osteoarthritis And Cartilage 21 (8): 1074-1082.
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2013 | Konferenzband | Veröffentlicht | PUB-ID: 2616537
Darling, Aaron, and Stoye, Jens, eds. 2013. “Algorithms in Bioinformatics”, Lecture Notes in Bioinformatics, 8126.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2611633
Jahn, Katharina, Winter, Sascha, Stoye, Jens, and Böcker, Sebastian. 2013. “Statistics for approximate gene clusters”. BMC Bioinformatics 14 (Suppl 15: Proc. of RECOMB-CG 2013): S14.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548236
Schwientek, Patrick, Wendler, Sergej, Neshat, Armin, Eirich, Christina, Rückert, Christian, Klein, Andreas, Wehmeier, Udo F, Kalinowski, Jörn, Stoye, Jens, and Pühler, Alfred. 2013. “Comparative RNA-sequencing of the acarbose producer Actinoplanes sp. SE50/110 cultivated in different growth media”. Journal of Biotechnology 167 (2): 166-177.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548286
Luque-Almagro, Víctor M, Acera, Felipe, Igeño, Ma Isabel, Wibberg, Daniel, Roldán, Ma Dolores, Sáez, Lara P, Hennig, Magdalena, et al. 2013. “Draft whole genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344”. Environmental Microbiology 15 (1): 253-270.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2552092
Wittler, Roland. 2013. “Unraveling overlapping deletions by agglomerative clustering”. BMC Genomics 14 (Suppl 1): S12.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529309
Bolzan de Campos, Samanta, Youn, Jung-Won, Farina, Roberto, Jaenicke, Sebastian, Jünemann, Sebastian, Szczepanowski, Rafael, Beneduzi, Anelise, Vargas, Luciano K., Wendisch, Volker F., and Passaglia, Luciane. 2013. “Changes in Root Bacterial Communities Associated to Two Different Development Stages of Canola (*Brassica napus* L. var oleifera) Evaluated through Next-Generation Sequencing”. Microbial Ecology 65 (3): 593-601.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2659331
Feijão, Pedro, and Meidanis, Joao. 2013. “Extending the Algebraic Formalism for Genome Rearrangements to Include Linear Chromosomes”. IEEE/ACM Transactions on Computational Biology and Bioinformatics 10 (4): 819-831.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529202
Zakrzewski, Martha, Bekel, Thomas, Ander, Christina, Pühler, Alfred, Rupp, Oliver, Stoye, Jens, Schlüter, Andreas, and Goesmann, Alexander. 2013. “MetaSAMS - A novel software platform for taxonomic classification, functional annotation and comparative analysis of metagenome datasets”. Journal of Biotechnology 167 (2): 156-165.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2560353
Dörr, Daniel, Gronau, Ilan, Moran, Shlomo, and Yavneh, Irad. 2012. “Stochastic errors vs. modeling errors in distance based phylogenetic reconstructions”. Algorithms for Molecular Biology 7 (1): 22.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2512642
Dörr, Daniel, Thévenin, Annelyse, and Stoye, Jens. 2012. “Gene family assignment-free comparative genomics”. BMC Bioinformatics 13 (Suppl 19: Proc. of RECOMB-CG 2012): S3.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2498160
Schröder, Jasmin, Maus, Irena, Meyer, Katja, Wördemann, Stephanie, Blom, Jochen, Jaenicke, Sebastian, Schneider, Jessica, Trost, Eva, and Tauch, Andreas. 2012. “Complete genome sequence, lifestyle, and multi-drug resistance of the human pathogen Corynebacterium resistens DSM 45100 isolated from blood samples of a leukemia patient”. BMC Genomics 13 (1): 141.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2517239
Hoffmann, Nils, Keck, Matthias, Neuweger, Heiko, Wilhelm, Mathias, Högy, Petra, Niehaus, Karsten, and Stoye, Jens. 2012. “Combining peak- and chromatogram-based retention time alignment algorithms for multiple chromatography-mass spectrometry datasets”. BMC Bioinformatics 13 (1): 21.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2512644
Jahn, Katharina, Sudek, Henner, and Stoye, Jens. 2012. “Multiple genome comparison based on overlap regions of pairwise local alignments”. BMC Bioinformatics 13 (Suppl. 19: Proc. of RECOMB-CG 2012): S7.
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