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410 Publikationen

2016 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2900111
Kowada, L.A.B., Doerr, D., Dantas, S., Stoye, J.: New Genome Similarity Measures based on Conserved Gene Adjacencies. In: Singh, M. (ed.) Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Bioinformatics (LNBI). 9649, p. 204-224. Springer (2016).
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2016 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2901740
Luhmann, N., Thévenin, A., Ouangraoua, A., Wittler, R., Chauve, C.: The SCJ small parsimony problem for weighted gene adjacencies. Proceedings 12th International Symposium, ISBRA 2016. Lecture Notes in Computer Science. 9683, p. 200-210. Springer International Publishing (2016).
PUB | DOI | Download (ext.) | arXiv
 
2016 | Konferenzband | Veröffentlicht | PUB-ID: 2912258
Hölldobler, S. ed: Genfamilienfreier Genomvergleich. LNI. D-16, 91-100 (2016).
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911748
Krahn, T., Wibberg, D., Maus, I., Winkler, A., Pühler, A., Poirel, L., Schlüter, A.: Complete Genome Sequence ofAcinetobacter baumanniiCIP 70.10, a Susceptible Reference Strain for Comparative Genome Analyses. Genome Announcements. 3, e00850-15 (2015).
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2677844
Dias Vieira Braga, M., Stoye, J.: Sorting linear genomes with rearrangements and indels. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 12, 500-506 (2015).
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2726366
Viduani Martinez, F.H., Feijão, P., Dias Vieira Braga, M., Stoye, J.: On the family-free DCJ distance and similarity. Algorithms for Molecular Biology. 10, : 13 (2015).
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2715682
Henning, P., Kuich, J.L., Hoffmann, N., Stefan, K.: Maui-VIA: a user-friendly software for visual identification, alignment, correction, and quantification of gas chromatography–mass spectrometry data. Frontiers in Bioengineering and Biotechnology. 2, (2015).
PUB | DOI | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2766708
Chen, C., Bartenhagen, C., Gombert, M., Okpanyi, V., Binder, V., Röttgers, S., Bradtke, J., Teigler-Schlegel, A., Harbott, J., Ginzel, S., Thiele, R., Husemann, P., Krell, P., Borkhardt, A., Dugas, M., Hu, J., Fischer, U.: Next-generation-sequencing of recurrent childhood high hyperdiploid acute lymphoblastic leukemia reveals mutations typically associated with high risk patients. Leukemia research. (2015).
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764612
Wittler, R., Marschall, T., Schönhuth, A., Makinen, V.: Repeat- and error-aware comparison of deletions. Bioinformatics. 31, 2947-2954 (2015).
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2015 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2757497
Holley, G., Wittler, R., Stoye, J.: Bloom Filter Trie - a data structure for pan-genome storage. Proceedings of WABI 2015. LNBI. 9289, p. 217-230. (2015).
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2015 | Bielefelder E-Dissertation | PUB-ID: 2786037
Hilker, R.: Development of a read mapping analysis software and computational pan genome analysis of 20 Pseudomonas aeruginosa strains. Bielefeld University, Bielefeld (2015).
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2015 | Konferenzband | Veröffentlicht | PUB-ID: 2780229
Meidanis, J., Stoye, J. eds: Proceedings of the 13th Annual Research in Computational Molecular Biology (RECOMB) Satellite Workshop on Comparative Genomics: Bioinformatics. BMC Bioinformatics. 16, (2015).
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2015 | Konferenzband | Veröffentlicht | PUB-ID: 2780232
Meidanis, J., Stoye, J. eds: Proceedings of the 13th Annual Research in Computational Molecular Biology (RECOMB) Satellite Workshop on Comparative Genomics: Genomics. BMC Genomics. 16, (2015).
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2014 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2684241
Viduani Martinez, F.H., Feijão, P., Dias Vieira Braga, M., Stoye, J.: On the family-free DCJ distance. In: Brown, D. and Morgenstern, B. (eds.) Algorithms in Bioinformatics. WABI 2014. Lecture Notes in Bioinformatics. 8701, p. 174-186. Springer Verlag, Berlin ; Heidelberg (2014).
PUB | DOI
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2687033
Dörr, D., Stoye, J., Böcker, S., Jahn, K.: Identifying Gene Clusters by Discovering Common Intervals in Indeterminate Strings. BMC Genomics. 15, S2 (2014).
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2685362
Lechner, M., Hernandez-Rosales, M., Dörr, D., Wieseke, N., Thévenin, A., Stoye, J., Hartmann, R.K., Prohaska, S.J., Stadler, P.F.: Orthology Detection Combining Clustering and Synteny for Very Large Datasets. PLoS ONE. 9, e105015 (2014).
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2689773
Jünemann, S., Prior, K., Albersmeier, A., Albaum, S., Kalinowski, J., Goesmann, A., Stoye, J., Harmsen, D.: GABenchToB: A Genome Assembly Benchmark Tuned on Bacteria and Benchtop Sequencers. PLOS ONE. 9, e107014 (2014).
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2014 | Bielefelder E-Dissertation | PUB-ID: 2723541
Ander, C.: Bioinformatic methods for the analysis and comparison of metagenomes and metatranscriptomes. Universitätsbibliothek Bielefeld, Bielefeld (2014).
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2674387
Hilker, R., Stadermann, K.B., Doppmeier, D., Kalinowski, J., Stoye, J., Straube, J., Winnebald, J., Goesmann, A.: ReadXplorer - Visualization and Analysis of Mapped Sequences. Bioinformatics. 30, 2247-2254 (2014).
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2665038
Schwientek, P., Neshat, A., Kalinowski, J., Klein, A., Rückert, C., Schneiker-Bekel, S., Wendler, S., Stoye, J., Pühler, A.: Improving the genome annotation of the acarbose producer Actinoplanes sp. SE50/110 by sequencing enriched 5'-ends of primary transcripts. Journal of Biotechnology. 190, 85-95 (2014).
PUB | DOI | WoS | PubMed | Europe PMC
 

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