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410 Publikationen

2016 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2900111
Kowada, L. A. B., Doerr, D., Dantas, S., and Stoye, J. (2016). “New Genome Similarity Measures based on Conserved Gene Adjacencies” in Research in Computational Molecular Biology. RECOMB 2016, Singh, M. ed. Lecture Notes in Bioinformatics (LNBI), vol. 9649, (Springer), 204-224.
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2016 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2901740
Luhmann, N., Thévenin, A., Ouangraoua, A., Wittler, R., and Chauve, C. (2016). “The SCJ small parsimony problem for weighted gene adjacencies” in Proceedings 12th International Symposium, ISBRA 2016 Lecture Notes in Computer Science, vol. 9683, (Springer International Publishing), 200-210.
PUB | DOI | Download (ext.) | arXiv
 
2016 | Konferenzband | Veröffentlicht | PUB-ID: 2912258
Hölldobler, S. ed. (2016). Genfamilienfreier Genomvergleich. LNI D-16, 91-100.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911748
Krahn, T., Wibberg, D., Maus, I., Winkler, A., Pühler, A., Poirel, L., and Schlüter, A. (2015). Complete Genome Sequence ofAcinetobacter baumanniiCIP 70.10, a Susceptible Reference Strain for Comparative Genome Analyses. Genome Announcements 3, e00850-15.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2677844
Dias Vieira Braga, M., and Stoye, J. (2015). Sorting linear genomes with rearrangements and indels. IEEE/ACM Transactions on Computational Biology and Bioinformatics 12, 500-506.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2726366
Viduani Martinez, F. H., Feijão, P., Dias Vieira Braga, M., and Stoye, J. (2015). On the family-free DCJ distance and similarity. Algorithms for Molecular Biology 10:13.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2715682
Henning, P., Kuich, J. L., Hoffmann, N., and Stefan, K. (2015). Maui-VIA: a user-friendly software for visual identification, alignment, correction, and quantification of gas chromatography–mass spectrometry data. Frontiers in Bioengineering and Biotechnology 2.
PUB | DOI | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2766708
Chen, C., Bartenhagen, C., Gombert, M., Okpanyi, V., Binder, V., Röttgers, S., Bradtke, J., Teigler-Schlegel, A., Harbott, J., Ginzel, S., et al. (2015). Next-generation-sequencing of recurrent childhood high hyperdiploid acute lymphoblastic leukemia reveals mutations typically associated with high risk patients. Leukemia research.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764612
Wittler, R., Marschall, T., Schönhuth, A., and Makinen, V. (2015). Repeat- and error-aware comparison of deletions. Bioinformatics 31, 2947-2954.
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2015 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2757497
Holley, G., Wittler, R., and Stoye, J. (2015). “Bloom Filter Trie - a data structure for pan-genome storage” in Proceedings of WABI 2015 LNBI, vol. 9289, 217-230.
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2015 | Bielefelder E-Dissertation | PUB-ID: 2786037
Hilker, R. (2015). Development of a read mapping analysis software and computational pan genome analysis of 20 Pseudomonas aeruginosa strains. Bielefeld: Bielefeld University.
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2015 | Konferenzband | Veröffentlicht | PUB-ID: 2780229
Meidanis, J., and Stoye, J. eds. (2015). Proceedings of the 13th Annual Research in Computational Molecular Biology (RECOMB) Satellite Workshop on Comparative Genomics: Bioinformatics. BMC Bioinformatics 16.
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2015 | Konferenzband | Veröffentlicht | PUB-ID: 2780232
Meidanis, J., and Stoye, J. eds. (2015). Proceedings of the 13th Annual Research in Computational Molecular Biology (RECOMB) Satellite Workshop on Comparative Genomics: Genomics. BMC Genomics 16.
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2014 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2684241
Viduani Martinez, F. H., Feijão, P., Dias Vieira Braga, M., and Stoye, J. (2014). “On the family-free DCJ distance” in Algorithms in Bioinformatics. WABI 2014, Brown, D., and Morgenstern, B. eds. Lecture Notes in Bioinformatics, vol. 8701, (Berlin ; Heidelberg: Springer Verlag), 174-186.
PUB | DOI
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2687033
Dörr, D., Stoye, J., Böcker, S., and Jahn, K. (2014). Identifying Gene Clusters by Discovering Common Intervals in Indeterminate Strings. BMC Genomics 15, S2.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2685362
Lechner, M., Hernandez-Rosales, M., Dörr, D., Wieseke, N., Thévenin, A., Stoye, J., Hartmann, R. K., Prohaska, S. J., and Stadler, P. F. (2014). Orthology Detection Combining Clustering and Synteny for Very Large Datasets. PLoS ONE 9, e105015.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2689773
Jünemann, S., Prior, K., Albersmeier, A., Albaum, S., Kalinowski, J., Goesmann, A., Stoye, J., and Harmsen, D. (2014). GABenchToB: A Genome Assembly Benchmark Tuned on Bacteria and Benchtop Sequencers. PLOS ONE 9, e107014.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Bielefelder E-Dissertation | PUB-ID: 2723541
Ander, C. (2014). Bioinformatic methods for the analysis and comparison of metagenomes and metatranscriptomes. Bielefeld: Universitätsbibliothek Bielefeld.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2674387
Hilker, R., Stadermann, K. B., Doppmeier, D., Kalinowski, J., Stoye, J., Straube, J., Winnebald, J., and Goesmann, A. (2014). ReadXplorer - Visualization and Analysis of Mapped Sequences. Bioinformatics 30, 2247-2254.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2665038
Schwientek, P., Neshat, A., Kalinowski, J., Klein, A., Rückert, C., Schneiker-Bekel, S., Wendler, S., Stoye, J., and Pühler, A. (2014). Improving the genome annotation of the acarbose producer Actinoplanes sp. SE50/110 by sequencing enriched 5'-ends of primary transcripts. Journal of Biotechnology 190, 85-95.
PUB | DOI | WoS | PubMed | Europe PMC
 

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