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410 Publikationen

2016 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2900111
Kowada LAB, Doerr D, Dantas S, Stoye J (2016)
New Genome Similarity Measures based on Conserved Gene Adjacencies.
In: Research in Computational Molecular Biology. RECOMB 2016. Singh M (Ed); Lecture Notes in Bioinformatics (LNBI), 9649. Springer: 204-224.
PUB | DOI
 
2016 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2901740
Luhmann N, Thévenin A, Ouangraoua A, Wittler R, Chauve C (2016)
The SCJ small parsimony problem for weighted gene adjacencies.
In: Proceedings 12th International Symposium, ISBRA 2016. Lecture Notes in Computer Science, 9683. Springer International Publishing: 200-210.
PUB | DOI | Download (ext.) | arXiv
 
2016 | Konferenzband | Veröffentlicht | PUB-ID: 2912258
Hölldobler S (Ed) (2016)
Genfamilienfreier Genomvergleich.
LNI D-16: 91-100.
PUB | Download (ext.)
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911748
Krahn T, Wibberg D, Maus I, Winkler A, Pühler A, Poirel L, Schlüter A (2015)
Complete Genome Sequence ofAcinetobacter baumanniiCIP 70.10, a Susceptible Reference Strain for Comparative Genome Analyses.
Genome Announcements 3(4): e00850-15.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2677844
Dias Vieira Braga M, Stoye J (2015)
Sorting linear genomes with rearrangements and indels.
IEEE/ACM Transactions on Computational Biology and Bioinformatics 12(3): 500-506.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2726366
Viduani Martinez FH, Feijão P, Dias Vieira Braga M, Stoye J (2015)
On the family-free DCJ distance and similarity.
Algorithms for Molecular Biology 10: 13.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2715682
Henning P, Kuich JL, Hoffmann N, Stefan K (2015)
Maui-VIA: a user-friendly software for visual identification, alignment, correction, and quantification of gas chromatography–mass spectrometry data.
Frontiers in Bioengineering and Biotechnology 2(84).
PUB | DOI | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2766708
Chen C, Bartenhagen C, Gombert M, Okpanyi V, Binder V, Röttgers S, Bradtke J, Teigler-Schlegel A, Harbott J, Ginzel S, Thiele R, Husemann P, Krell P, Borkhardt A, Dugas M, Hu J, Fischer U (2015)
Next-generation-sequencing of recurrent childhood high hyperdiploid acute lymphoblastic leukemia reveals mutations typically associated with high risk patients.
Leukemia research.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764612
Wittler R, Marschall T, Schönhuth A, Makinen V (2015)
Repeat- and error-aware comparison of deletions.
Bioinformatics 31(18): 2947-2954.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2015 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2757497
Holley G, Wittler R, Stoye J (2015)
Bloom Filter Trie - a data structure for pan-genome storage.
In: Proceedings of WABI 2015. LNBI, 9289. 217-230.
PUB
 
2015 | Bielefelder E-Dissertation | PUB-ID: 2786037
Hilker R (2015)
Development of a read mapping analysis software and computational pan genome analysis of 20 Pseudomonas aeruginosa strains.
Bielefeld: Bielefeld University.
PUB | Dateien verfügbar
 
2015 | Konferenzband | Veröffentlicht | PUB-ID: 2780229
Meidanis J, Stoye J (Eds) (2015)
Proceedings of the 13th Annual Research in Computational Molecular Biology (RECOMB) Satellite Workshop on Comparative Genomics: Bioinformatics.
BMC Bioinformatics 16(Supplement 14).
PUB | Download (ext.)
 
2015 | Konferenzband | Veröffentlicht | PUB-ID: 2780232
Meidanis J, Stoye J (Eds) (2015)
Proceedings of the 13th Annual Research in Computational Molecular Biology (RECOMB) Satellite Workshop on Comparative Genomics: Genomics.
BMC Genomics 16(Supplement 10).
PUB | Download (ext.)
 
2014 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2684241
Viduani Martinez FH, Feijão P, Dias Vieira Braga M, Stoye J (2014)
On the family-free DCJ distance.
In: Algorithms in Bioinformatics. WABI 2014. Brown D, Morgenstern B (Eds); Lecture Notes in Bioinformatics, 8701. Berlin ; Heidelberg: Springer Verlag: 174-186.
PUB | DOI
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2687033
Dörr D, Stoye J, Böcker S, Jahn K (2014)
Identifying Gene Clusters by Discovering Common Intervals in Indeterminate Strings.
BMC Genomics 15(Suppl. 6: Proc. of RECOMB-CG 2014): S2.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2685362
Lechner M, Hernandez-Rosales M, Dörr D, Wieseke N, Thévenin A, Stoye J, Hartmann RK, Prohaska SJ, Stadler PF (2014)
Orthology Detection Combining Clustering and Synteny for Very Large Datasets.
PLoS ONE 9(8): e105015.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2689773
Jünemann S, Prior K, Albersmeier A, Albaum S, Kalinowski J, Goesmann A, Stoye J, Harmsen D (2014)
GABenchToB: A Genome Assembly Benchmark Tuned on Bacteria and Benchtop Sequencers.
PLOS ONE 9(9): e107014.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Bielefelder E-Dissertation | PUB-ID: 2723541
Ander C (2014)
Bioinformatic methods for the analysis and comparison of metagenomes and metatranscriptomes.
Bielefeld: Universitätsbibliothek Bielefeld.
PUB | PDF
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2674387
Hilker R, Stadermann KB, Doppmeier D, Kalinowski J, Stoye J, Straube J, Winnebald J, Goesmann A (2014)
ReadXplorer - Visualization and Analysis of Mapped Sequences.
Bioinformatics 30(16): 2247-2254.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2665038
Schwientek P, Neshat A, Kalinowski J, Klein A, Rückert C, Schneiker-Bekel S, Wendler S, Stoye J, Pühler A (2014)
Improving the genome annotation of the acarbose producer Actinoplanes sp. SE50/110 by sequencing enriched 5'-ends of primary transcripts.
Journal of Biotechnology 190: 85-95.
PUB | DOI | WoS | PubMed | Europe PMC
 

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