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410 Publikationen

2016 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2900111
Kowada, L. A. B., Doerr, D., Dantas, S., & Stoye, J. (2016). New Genome Similarity Measures based on Conserved Gene Adjacencies. In M. Singh (Ed.), Lecture Notes in Bioinformatics (LNBI): Vol. 9649. Research in Computational Molecular Biology. RECOMB 2016 (pp. 204-224). Springer. doi:10.1007/978-3-319-31957-5_15
PUB | DOI
 
2016 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2901740
Luhmann, N., Thévenin, A., Ouangraoua, A., Wittler, R., & Chauve, C. (2016). The SCJ small parsimony problem for weighted gene adjacencies. Proceedings 12th International Symposium, ISBRA 2016, 9683, 200-210. doi:10.1007/978-3-319-38782-6_17
PUB | DOI | Download (ext.) | arXiv
 
2016 | Konferenzband | Veröffentlicht | PUB-ID: 2912258
Hölldobler S. (Ed.) (2016). Genfamilienfreier Genomvergleich. LNI, D-16, 91-100.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911748
Krahn, T., Wibberg, D., Maus, I., Winkler, A., Pühler, A., Poirel, L., & Schlüter, A. (2015). Complete Genome Sequence ofAcinetobacter baumanniiCIP 70.10, a Susceptible Reference Strain for Comparative Genome Analyses. Genome Announcements, 3(4), e00850-15. doi:10.1128/genomea.00850-15
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2677844
Dias Vieira Braga, M., & Stoye, J. (2015). Sorting linear genomes with rearrangements and indels. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 12(3), 500-506. doi:10.1109/TCBB.2014.2329297
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2726366
Viduani Martinez, F. H., Feijão, P., Dias Vieira Braga, M., & Stoye, J. (2015). On the family-free DCJ distance and similarity. Algorithms for Molecular Biology, 10, 13. doi:10.1186/s13015-015-0041-9
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2715682
Henning, P., Kuich, J. L., Hoffmann, N., & Stefan, K. (2015). Maui-VIA: a user-friendly software for visual identification, alignment, correction, and quantification of gas chromatography–mass spectrometry data. Frontiers in Bioengineering and Biotechnology, 2(84). doi:10.3389/fbioe.2014.00084
PUB | DOI | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2766708
Chen, C., Bartenhagen, C., Gombert, M., Okpanyi, V., Binder, V., Röttgers, S., Bradtke, J., et al. (2015). Next-generation-sequencing of recurrent childhood high hyperdiploid acute lymphoblastic leukemia reveals mutations typically associated with high risk patients. Leukemia research. doi:10.1016/j.leukres.2015.06.005
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764612
Wittler, R., Marschall, T., Schönhuth, A., & Makinen, V. (2015). Repeat- and error-aware comparison of deletions. Bioinformatics, 31(18), 2947-2954. doi:10.1093/bioinformatics/btv304
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2015 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2757497
Holley, G., Wittler, R., & Stoye, J. (2015). Bloom Filter Trie - a data structure for pan-genome storage. Proceedings of WABI 2015, 9289, 217-230
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2015 | Bielefelder E-Dissertation | PUB-ID: 2786037
Hilker, R. (2015). Development of a read mapping analysis software and computational pan genome analysis of 20 Pseudomonas aeruginosa strains. Bielefeld: Bielefeld University.
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2015 | Konferenzband | Veröffentlicht | PUB-ID: 2780229
Meidanis J., & Stoye J. (Eds.) (2015). Proceedings of the 13th Annual Research in Computational Molecular Biology (RECOMB) Satellite Workshop on Comparative Genomics: Bioinformatics. BMC Bioinformatics, 16(Supplement 14)
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2015 | Konferenzband | Veröffentlicht | PUB-ID: 2780232
Meidanis J., & Stoye J. (Eds.) (2015). Proceedings of the 13th Annual Research in Computational Molecular Biology (RECOMB) Satellite Workshop on Comparative Genomics: Genomics. BMC Genomics, 16(Supplement 10)
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2014 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2684241
Viduani Martinez, F. H., Feijão, P., Dias Vieira Braga, M., & Stoye, J. (2014). On the family-free DCJ distance. In D. Brown & B. Morgenstern (Eds.), Lecture Notes in Bioinformatics: Vol. 8701. Algorithms in Bioinformatics. WABI 2014 (pp. 174-186). Berlin ; Heidelberg: Springer Verlag. doi:10.1007/978-3-662-44753-6_14
PUB | DOI
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2687033
Dörr, D., Stoye, J., Böcker, S., & Jahn, K. (2014). Identifying Gene Clusters by Discovering Common Intervals in Indeterminate Strings. BMC Genomics, 15(Suppl. 6: Proc. of RECOMB-CG 2014), S2. doi:10.1186/1471-2164-15-S6-S2
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2685362
Lechner, M., Hernandez-Rosales, M., Dörr, D., Wieseke, N., Thévenin, A., Stoye, J., Hartmann, R. K., et al. (2014). Orthology Detection Combining Clustering and Synteny for Very Large Datasets. PLoS ONE, 9(8), e105015. doi:10.1371/journal.pone.0105015
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2689773
Jünemann, S., Prior, K., Albersmeier, A., Albaum, S., Kalinowski, J., Goesmann, A., Stoye, J., et al. (2014). GABenchToB: A Genome Assembly Benchmark Tuned on Bacteria and Benchtop Sequencers. PLOS ONE, 9(9), e107014. doi:10.1371/journal.pone.0107014
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Bielefelder E-Dissertation | PUB-ID: 2723541
Ander, C. (2014). Bioinformatic methods for the analysis and comparison of metagenomes and metatranscriptomes. Bielefeld: Universitätsbibliothek Bielefeld.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2674387
Hilker, R., Stadermann, K. B., Doppmeier, D., Kalinowski, J., Stoye, J., Straube, J., Winnebald, J., et al. (2014). ReadXplorer - Visualization and Analysis of Mapped Sequences. Bioinformatics, 30(16), 2247-2254. doi:10.1093/bioinformatics/btu205
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2665038
Schwientek, P., Neshat, A., Kalinowski, J., Klein, A., Rückert, C., Schneiker-Bekel, S., Wendler, S., et al. (2014). Improving the genome annotation of the acarbose producer Actinoplanes sp. SE50/110 by sequencing enriched 5'-ends of primary transcripts. Journal of Biotechnology, 190, 85-95. doi:10.1016/j.jbiotec.2014.03.013
PUB | DOI | WoS | PubMed | Europe PMC
 

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