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414 Publikationen

2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773312 OA
Pollard, Daniel A., Bergman, Casey M., Stoye, Jens, Celniker, Susan E., and Eisen, Michael B. “Benchmarking tools for the alignment of functional noncoding DNA”. BMC Bioinformatics 5.1 (2004): 6.
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773569 OA
Gusfield, Dan, and Stoye, Jens. “Linear time algorithms for finding and representing all the tandem repeats in a string”. Journal of computer and system sciences 69.4 (2004): 525-546.
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773761 OA
Müller, Tobias, Rahmann, Sven, Dandekar, Thomas, and Wolf, Matthias. “Accurate and robust phylogeny estimation based on profile distances: a study of the Chlorophyceae (Chlorophyta)”. BMC Evolutionary Biology 4.1 (2004): 20.
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2004 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1607263
Bergeron, Anne, Mixtacki, Julia, and Stoye, Jens. “Reversal Distance without Hurdles and Fortresses”. Proc. of CPM 2004. SPRINGER-VERLAG BERLIN, 2004.Vol. 3109. LNCS. 388-399.
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2003 | Report | PUB-ID: 1970475 OA
Schürmann, Klaus-Bernd, and Stoye, Jens. Suffix Tree Construction and Storage with Limited Main Memory. Bielefeld: Technische Fakultät der Universität Bielefeld, 2003. Forschungsberichte.
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1612664
Heber, Steffen, and Stoye, Jens. “The European Conference on Computational Biology”. Drug Discovery Today 8.3 (2003): 113-114.
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1918949
Giegerich, Robert, and Stoye, Jens. “Finden, fast ohne zu suchen: Indexstrukturen in der Bioinformatik”. Forschung an der Universität Bielefeld 26 (2003): 63-68.
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2003 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919005
Bannert, Constantin, and Stoye, Jens. “Evaluation of the Jumping Alignment Algorithm with Artificial and Biological Data”. Proc. of GCB 2003. 2003. 21-25.
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1610397 OA
Giegerich, Robert, Kurtz, Stefan, and Stoye, Jens. “Efficient implementation of lazy suffix trees”. SOFTWARE-PRACTICE & EXPERIENCE 33.11 (2003): 1035-1049.
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609403 OA
Sammeth, Michael, Morgenstern, Burkhard, and Stoye, Jens. “Divide-and-conquer multiple alignment with segment-based constraints”. BIOINFORMATICS 19.Suppl 2 (2003): ii189-ii195.
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2003 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1610433
Bergeron, Anne, and Stoye, Jens. “On the similarity of sets of permutations and its applications to genome comparison”. Proc. of COCOON 2003. 2003.Vol. 2697. LNCS. 68-79.
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1610503 OA
Sammeth, Michael, Rothgänger, Jörg, Esser, Wolfram, Albert, Jürgen, Stoye, Jens, and Harmsen, Dag. “QAlign: quality-based multiple alignments with dynamic phylogenetic analysis”. BIOINFORMATICS 19.12 (2003): 1592-1593.
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2003 | Report | PUB-ID: 1970477 OA
Bergeron, Anne, and Stoye, Jens. On the Similarity of Sets of Permutations and its Applications to Genome Comparison. Bielefeld: Technische Fakultät der Universität Bielefeld, 2003. Forschungsberichte.
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2003 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2017545 OA
Nattkemper, Tim Wilhelm, Hermann, Thomas, Schubert, Walter, and Ritter, Helge. “Look & Listen: Sonification and Visualization of Multiparameter Micrographs”. Engineering in Medicine and Biology Society. Proceedings of the 25th Annual International Conference of the IEEE. Cancun, Mexico: IEEE, 2003.Vol. 2. 1311-1314.
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2002 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 1918951
Stoye, Jens. “Index Structures for Large Sequence Data: Suffix Trees and Affix Trees”. Lecture Notes in Informatics. Ed. Sigrid Schubert, Bernd Reusch, and Norbert Jesse. 2002.Vol. P-20. 67-67.
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2002 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919000
Cieliebak, Marc, Lipták, Zsuzsanna, Welzl, Emo, Erlebach, Thomas, and Stoye, Jens. “Algorithmic Complexity of Protein Identification: Searching in Weighted Strings”. Proc. of IFIP TCS 2002. 2002. 143-156.
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2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773578 OA
Spang, Rainer, Rehmsmeier, Marc, and Stoye, Jens. “A novel approach to remote homology detection: jumping alignments”. Journal of Computational Biology 9.5 (2002): 747-760.
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2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773332 OA
Stoye, Jens, and Gusfield, Dan. “Simple and flexible detection of contiguous repeats using a suffix tree”. Theoretical Computer Science 270.1-2 (2002): 843-856.
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2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773329 OA
Bergeron, Anne, Heber, Steffen, and Stoye, Jens. “Common intervals and sorting by reversals: a marriage of necessity”. Bioinformatics 18.Suppl 2 (2002): S54-S63.
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2002 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1918995
Heber, Steffen, Stoye, Jens, Frohme, Marcus, Hoheisel, Jörg, and Vingron, Martin. “Resampling Methods in Physical Mapping”. Proc. of GfKl 2000. 2002. 437-444.
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