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414 Publikationen

2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773312 OA
D.A. Pollard, et al., “Benchmarking tools for the alignment of functional noncoding DNA”, BMC Bioinformatics, vol. 5, 2004, pp. 6.
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773569 OA
D. Gusfield and J. Stoye, “Linear time algorithms for finding and representing all the tandem repeats in a string”, Journal of computer and system sciences, vol. 69, 2004, pp. 525-546.
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773761 OA
T. Müller, et al., “Accurate and robust phylogeny estimation based on profile distances: a study of the Chlorophyceae (Chlorophyta)”, BMC Evolutionary Biology, vol. 4, 2004, pp. 20.
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2004 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1607263
A. Bergeron, J. Mixtacki, and J. Stoye, “Reversal Distance without Hurdles and Fortresses”, Proc. of CPM 2004, LNCS, vol. 3109, SPRINGER-VERLAG BERLIN, 2004, pp.388-399.
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2003 | Report | PUB-ID: 1970475 OA
K.-B. Schürmann and J. Stoye, Suffix Tree Construction and Storage with Limited Main Memory, Forschungsberichte, Bielefeld: Technische Fakultät der Universität Bielefeld, 2003.
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1612664
S. Heber and J. Stoye, “The European Conference on Computational Biology”, Drug Discovery Today, vol. 8, 2003, pp. 113-114.
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1918949
R. Giegerich and J. Stoye, “Finden, fast ohne zu suchen: Indexstrukturen in der Bioinformatik”, Forschung an der Universität Bielefeld, vol. 26, 2003, pp. 63-68.
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2003 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919005
C. Bannert and J. Stoye, “Evaluation of the Jumping Alignment Algorithm with Artificial and Biological Data”, Proc. of GCB 2003, 2003, pp.21-25.
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1610397 OA
R. Giegerich, S. Kurtz, and J. Stoye, “Efficient implementation of lazy suffix trees”, SOFTWARE-PRACTICE & EXPERIENCE, vol. 33, 2003, pp. 1035-1049.
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609403 OA
M. Sammeth, B. Morgenstern, and J. Stoye, “Divide-and-conquer multiple alignment with segment-based constraints”, BIOINFORMATICS, vol. 19, 2003, pp. ii189-ii195.
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2003 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1610433
A. Bergeron and J. Stoye, “On the similarity of sets of permutations and its applications to genome comparison”, Proc. of COCOON 2003, LNCS, vol. 2697, 2003, pp.68-79.
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1610503 OA
M. Sammeth, et al., “QAlign: quality-based multiple alignments with dynamic phylogenetic analysis”, BIOINFORMATICS, vol. 19, 2003, pp. 1592-1593.
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2003 | Report | PUB-ID: 1970477 OA
A. Bergeron and J. Stoye, On the Similarity of Sets of Permutations and its Applications to Genome Comparison, Forschungsberichte, Bielefeld: Technische Fakultät der Universität Bielefeld, 2003.
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2003 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2017545 OA
T.W. Nattkemper, et al., “Look & Listen: Sonification and Visualization of Multiparameter Micrographs”, Engineering in Medicine and Biology Society. Proceedings of the 25th Annual International Conference of the IEEE, vol. 2, Cancun, Mexico: IEEE, 2003, pp.1311-1314.
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2002 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 1918951
J. Stoye, “Index Structures for Large Sequence Data: Suffix Trees and Affix Trees”, Lecture Notes in Informatics, S. Schubert, B. Reusch, and N. Jesse, eds., vol. P-20, 2002, pp.67-67.
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2002 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919000
M. Cieliebak, et al., “Algorithmic Complexity of Protein Identification: Searching in Weighted Strings”, Proc. of IFIP TCS 2002, 2002, pp.143-156.
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2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773578 OA
R. Spang, M. Rehmsmeier, and J. Stoye, “A novel approach to remote homology detection: jumping alignments”, Journal of Computational Biology, vol. 9, 2002, pp. 747-760.
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2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773332 OA
J. Stoye and D. Gusfield, “Simple and flexible detection of contiguous repeats using a suffix tree”, Theoretical Computer Science, vol. 270, 2002, pp. 843-856.
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2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773329 OA
A. Bergeron, S. Heber, and J. Stoye, “Common intervals and sorting by reversals: a marriage of necessity”, Bioinformatics, vol. 18, 2002, pp. S54-S63.
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2002 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1918995
S. Heber, et al., “Resampling Methods in Physical Mapping”, Proc. of GfKl 2000, 2002, pp.437-444.
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