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412 Publikationen

2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2912492
Luhmann, Nina, Dörr, Daniel, and Chauve, Cedric. “Comparative scaffolding and gap filling of ancient bacterial genomes applied to two ancient Yersinia pestis genomes”. Microbial Genomics 3.9 (2017).
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913556
Jünemann, Sebastian, Kleinbölting, Nils, Jaenicke, Sebastian, Henke, Christian, Hassa, Julia, Nelkner, Johanna, Stolze, Yvonne, Albaum, Stefan, Schlüter, Andreas, Goesmann, Alexander, Sczyrba, Alexander, and Stoye, Jens. “Bioinformatics for NGS-based metagenomics and the application to biogas research”. Journal of Biotechnology 261.SI (2017): 10-23.
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2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2913015
Rubert, Diego, Medeiros, Gabriel L., Hoshino, Edna A., Dias Vieira Braga, Marília, Stoye, Jens, and Martinez, Fábio Henrique Viduani. “Algorithms for Computing the Family-Free Genomic Similarity under DCJ”. Comparative Genomics. RECOMB-CG 2017. Ed. Joao Meidanis and Luay Nakhleh. Cham: Springer Verlag, 2017.Vol. 10562. Lecture Notes in Bioinformatics. 76-100.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909057
Rubert, Diego, Feijão, Pedro, Dias Vieira Braga, Marília, Stoye, Jens, and Martinez, Fábio Henrique Viduani. “Approximating the DCJ distance of balanced genomes in linear time”. Algorithms for Molecular Biology 12 (2017): 3.
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2017 | Bielefelder E-Dissertation | PUB-ID: 2909213
Luhmann, Nina. Phylogenetic assembly of paleogenomes integrating ancient DNA data. Bielefeld: Universität Bielefeld, 2017.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916552
da Silva, Poly H., Machado, Raphael, Dantas, Simone, and Dias Vieira Braga, Marília. “Genomic Distance with High Indel Costs”. IEEE/ACM Transactions on Computational Biology and Bioinformatics 14.3 (2017): 728-732.
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2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2909409
Cunha, Luis, Dantas, Simone, Gagie, Travis, Wittler, Roland, Kowada, Luis, and Stoye, Jens. “Fast and Simple Jumbled Indexing for Binary Run-Length Encoded Strings”. Proceedings of CPM 2017. 2017.Vol. 78. LIPIcs. 19:1-19:9.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911814
Dörr, Daniel, Balaban, Metin, Feijão, Pedro, and Chauve, Cedric. “The gene family-free median of three”. Algorithms for Molecular Biology 12 (2017): 14.
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2017 | Preprint | Veröffentlicht | PUB-ID: 2908521
Cunha, Luís, Dantas, Simone, Gagie, Travis, Wittler, Roland, Kowada, Luis, and Stoye, Jens. “Faster Jumbled Indexing for Binary Run-Length Encoded Strings”. arXiv: 1702.01280 (2017).
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2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2907587
Holley, Guillaume, Wittler, Roland, Stoye, Jens, and Hach, Faraz. “Dynamic Alignment-Free and Reference-Free Read Compression”. Proceedings of RECOMB 2017. 2017.Vol. 10229. Lecture Notes in Bioinformatics. 50-65.
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2017 | Sammelwerksbeitrag | Im Druck | PUB-ID: 2913924
Anselmetti, Yoan, Luhmann, Nina, Bérard, Sèverine, Tannier, Eric, and Chauve, Cedric. “Comparative Methods for Reconstructing Ancient Genome Organization”. Comparative Genomics. Ed. João C. Setubal, Peter Stadler, and Jens Stoye. Springer Verlag, In Press. Methods in Molecular Biology.
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2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2913016
Schulz, Tizian, Stoye, Jens, and Dörr, Daniel. “Finding Teams in Graphs and its Application to Spatial Gene Cluster Discovery”. Proceedings of RECOMB-CG 2017. Berlin: Springer Verlag, 2017.Vol. 1704. Lecture Notes in Bioinformatics. 197-212.
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2017 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2908574
Luhmann, Nina, Lafond, Manuel, Thévenin, Annelyse, Ouangraoua, Aida, Wittler, Roland, and Chauve, Cedric. “The SCJ Small Parsimony Problem for Weighted Gene Adjacencies”. IEEE/ACM Transactions on Computational Biology and Bioinformatics 14 (2017).
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909967
Dörr, Daniel, Kowada, Luis Antonio B., Soares de Araujo, Francisco Eloi, Deshpande, Shachi, Dantas, Simone, Moret, Bernard M. E., and Stoye, Jens. “New Genome Similarity Measures based on Conserved Gene Adjacencies”. Journal of Computational Biology 24.6 (2017): 616-634.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901477
Ahmed Raza, Shan E, Langenkämper, Daniel, Sirinukunwattana, Korsuk, Epstein, David, Nattkemper, Tim Wilhelm, and Rajpoot, Nasir M. “Robust normalization protocols for multiplexed fluorescence bioimage analysis”. BioData Mining 9.1 (2016): 11.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905930
Winter, Sascha, Jahn, Katharina, Wehner, Stefanie, Kuchenbecker, Leon, Marz, Manja, Stoye, Jens, and Böcker, Sebastian. “Finding approximate gene clusters with GECKO 3”. Nucleic Acids Research 44.20 (2016): 9600-9610.
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2016 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2903708
Rubert, Diego, Feijão, Pedro, Dias Vieira Braga, Marília, Stoye, Jens, and Martinez, Fábio Henrique Viduani. “A Linear Time Approximation Algorithm for the DCJ Distance for Genomes with Bounded Number of Duplicates”. Algorithms in Bioinformatics. WABI 2016. Ed. Martin Frith and Christian Nørgaard Storm Pedersen. Cham: Springer, 2016.Vol. 9838. Lecture Notes in Bioinformatics. 293-306.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900129
Holley, Guillaume, Wittler, Roland, and Stoye, Jens. “Bloom Filter Trie: an alignment-free and reference-free data structure for pan-genome storage”. Algorithms for Molecular Biology 11 (2016): 3.
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2016 | Bielefelder E-Dissertation | PUB-ID: 2902049
Dörr, Daniel. Gene family-free genome comparison. Bielefeld: Universität Bielefeld, 2016.
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2016 | Bielefelder E-Dissertation | PUB-ID: 2906743
Bremges, Andreas. Assembling the microbial dark matter. Bielefeld: Universität Bielefeld, 2016.
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