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412 Publikationen

2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2912492
Luhmann, N., Dörr, D., Chauve, C.: Comparative scaffolding and gap filling of ancient bacterial genomes applied to two ancient Yersinia pestis genomes. Microbial Genomics. 3, (2017).
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913556
Jünemann, S., Kleinbölting, N., Jaenicke, S., Henke, C., Hassa, J., Nelkner, J., Stolze, Y., Albaum, S., Schlüter, A., Goesmann, A., Sczyrba, A., Stoye, J.: Bioinformatics for NGS-based metagenomics and the application to biogas research. Journal of Biotechnology. 261, 10-23 (2017).
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2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2913015
Rubert, D., Medeiros, G.L., Hoshino, E.A., Dias Vieira Braga, M., Stoye, J., Martinez, F.H.V.: Algorithms for Computing the Family-Free Genomic Similarity under DCJ. In: Meidanis, J. and Nakhleh, L. (eds.) Comparative Genomics. RECOMB-CG 2017. Lecture Notes in Bioinformatics. 10562, p. 76-100. Springer Verlag, Cham (2017).
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909057
Rubert, D., Feijão, P., Dias Vieira Braga, M., Stoye, J., Martinez, F.H.V.: Approximating the DCJ distance of balanced genomes in linear time. Algorithms for Molecular Biology. 12, : 3 (2017).
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2017 | Bielefelder E-Dissertation | PUB-ID: 2909213
Luhmann, N.: Phylogenetic assembly of paleogenomes integrating ancient DNA data. Universität Bielefeld, Bielefeld (2017).
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916552
da Silva, P.H., Machado, R., Dantas, S., Dias Vieira Braga, M.: Genomic Distance with High Indel Costs. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 14, 728-732 (2017).
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2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2909409
Cunha, L., Dantas, S., Gagie, T., Wittler, R., Kowada, L., Stoye, J.: Fast and Simple Jumbled Indexing for Binary Run-Length Encoded Strings. Proceedings of CPM 2017. LIPIcs. 78, p. 19:1-19:9. (2017).
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911814
Dörr, D., Balaban, M., Feijão, P., Chauve, C.: The gene family-free median of three. Algorithms for Molecular Biology. 12, : 14 (2017).
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2017 | Preprint | Veröffentlicht | PUB-ID: 2908521
Cunha, L., Dantas, S., Gagie, T., Wittler, R., Kowada, L., Stoye, J.: Faster Jumbled Indexing for Binary Run-Length Encoded Strings. arXiv: 1702.01280. (2017).
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2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2907587
Holley, G., Wittler, R., Stoye, J., Hach, F.: Dynamic Alignment-Free and Reference-Free Read Compression. Proceedings of RECOMB 2017. Lecture Notes in Bioinformatics. 10229, p. 50-65. (2017).
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2017 | Sammelwerksbeitrag | Im Druck | PUB-ID: 2913924
Anselmetti, Y., Luhmann, N., Bérard, S., Tannier, E., Chauve, C.: Comparative Methods for Reconstructing Ancient Genome Organization. In: Setubal, J.C., Stadler, P., and Stoye, J. (eds.) Comparative Genomics. Methods in Molecular Biology. Springer Verlag (In Press).
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2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2913016
Schulz, T., Stoye, J., Dörr, D.: Finding Teams in Graphs and its Application to Spatial Gene Cluster Discovery. Proceedings of RECOMB-CG 2017. Lecture Notes in Bioinformatics. 1704, p. 197-212. Springer Verlag, Berlin (2017).
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2017 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2908574
Luhmann, N., Lafond, M., Thévenin, A., Ouangraoua, A., Wittler, R., Chauve, C.: The SCJ Small Parsimony Problem for Weighted Gene Adjacencies. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 14, (2017).
PUB | DOI | PubMed | Europe PMC
 
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909967
Dörr, D., Kowada, L.A.B., Soares de Araujo, F.E., Deshpande, S., Dantas, S., Moret, B.M.E., Stoye, J.: New Genome Similarity Measures based on Conserved Gene Adjacencies. Journal of Computational Biology. 24, 616-634 (2017).
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901477
Ahmed Raza, S.E., Langenkämper, D., Sirinukunwattana, K., Epstein, D., Nattkemper, T.W., Rajpoot, N.M.: Robust normalization protocols for multiplexed fluorescence bioimage analysis. BioData Mining. 9, : 11 (2016).
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905930
Winter, S., Jahn, K., Wehner, S., Kuchenbecker, L., Marz, M., Stoye, J., Böcker, S.: Finding approximate gene clusters with GECKO 3. Nucleic Acids Research. 44, 9600-9610 (2016).
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2903708
Rubert, D., Feijão, P., Dias Vieira Braga, M., Stoye, J., Martinez, F.H.V.: A Linear Time Approximation Algorithm for the DCJ Distance for Genomes with Bounded Number of Duplicates. In: Frith, M. and Storm Pedersen, C.N. (eds.) Algorithms in Bioinformatics. WABI 2016. Lecture Notes in Bioinformatics. 9838, p. 293-306. Springer, Cham (2016).
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900129
Holley, G., Wittler, R., Stoye, J.: Bloom Filter Trie: an alignment-free and reference-free data structure for pan-genome storage. Algorithms for Molecular Biology. 11, : 3 (2016).
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2016 | Bielefelder E-Dissertation | PUB-ID: 2902049
Dörr, D.: Gene family-free genome comparison. Universität Bielefeld, Bielefeld (2016).
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2016 | Bielefelder E-Dissertation | PUB-ID: 2906743
Bremges, A.: Assembling the microbial dark matter. Universität Bielefeld, Bielefeld (2016).
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