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410 Publikationen

2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2913015
Rubert D, Medeiros GL, Hoshino EA, Dias Vieira Braga M, Stoye J, Martinez FHV (2017)
Algorithms for Computing the Family-Free Genomic Similarity under DCJ.
In: Comparative Genomics. RECOMB-CG 2017. Meidanis J, Nakhleh L (Eds); Lecture Notes in Bioinformatics, 10562. Cham: Springer Verlag: 76-100.
PUB | DOI
 
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909057
Rubert D, Feijão P, Dias Vieira Braga M, Stoye J, Martinez FHV (2017)
Approximating the DCJ distance of balanced genomes in linear time.
Algorithms for Molecular Biology 12: 3.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2017 | Bielefelder E-Dissertation | PUB-ID: 2909213
Luhmann N (2017)
Phylogenetic assembly of paleogenomes integrating ancient DNA data.
Bielefeld: Universität Bielefeld.
PUB | PDF
 
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916552
da Silva PH, Machado R, Dantas S, Dias Vieira Braga M (2017)
Genomic Distance with High Indel Costs.
IEEE/ACM Transactions on Computational Biology and Bioinformatics 14(3): 728-732.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2909409
Cunha L, Dantas S, Gagie T, Wittler R, Kowada L, Stoye J (2017)
Fast and Simple Jumbled Indexing for Binary Run-Length Encoded Strings.
In: Proceedings of CPM 2017. LIPIcs, 78. 19:1-19:9.
PUB | DOI
 
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911814
Dörr D, Balaban M, Feijão P, Chauve C (2017)
The gene family-free median of three.
Algorithms for Molecular Biology 12: 14.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Preprint | Veröffentlicht | PUB-ID: 2908521
Cunha L, Dantas S, Gagie T, Wittler R, Kowada L, Stoye J (2017)
Faster Jumbled Indexing for Binary Run-Length Encoded Strings.
arXiv: 1702.01280.
PUB
 
2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2907587
Holley G, Wittler R, Stoye J, Hach F (2017)
Dynamic Alignment-Free and Reference-Free Read Compression.
In: Proceedings of RECOMB 2017. Lecture Notes in Bioinformatics, 10229. 50-65.
PUB | DOI
 
2017 | Sammelwerksbeitrag | Im Druck | PUB-ID: 2913924
Anselmetti Y, Luhmann N, Bérard S, Tannier E, Chauve C (In Press)
Comparative Methods for Reconstructing Ancient Genome Organization.
In: Comparative Genomics. Setubal JC, Stadler P, Stoye J (Eds); Methods in Molecular Biology, Springer Verlag.
PUB
 
2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2913016
Schulz T, Stoye J, Dörr D (2017)
Finding Teams in Graphs and its Application to Spatial Gene Cluster Discovery.
In: Proceedings of RECOMB-CG 2017. Lecture Notes in Bioinformatics, 1704. Berlin: Springer Verlag: 197-212.
PUB | DOI
 
2017 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2908574
Luhmann N, Lafond M, Thévenin A, Ouangraoua A, Wittler R, Chauve C (2017)
The SCJ Small Parsimony Problem for Weighted Gene Adjacencies.
IEEE/ACM Transactions on Computational Biology and Bioinformatics 14.
PUB | DOI | PubMed | Europe PMC
 
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909967
Dörr D, Kowada LAB, Soares de Araujo FE, Deshpande S, Dantas S, Moret BME, Stoye J (2017)
New Genome Similarity Measures based on Conserved Gene Adjacencies.
Journal of Computational Biology 24(6): 616-634.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901477
Ahmed Raza SE, Langenkämper D, Sirinukunwattana K, Epstein D, Nattkemper TW, Rajpoot NM (2016)
Robust normalization protocols for multiplexed fluorescence bioimage analysis.
BioData Mining 9(1): 11.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905930
Winter S, Jahn K, Wehner S, Kuchenbecker L, Marz M, Stoye J, Böcker S (2016)
Finding approximate gene clusters with GECKO 3.
Nucleic Acids Research 44(20): 9600-9610.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2903708
Rubert D, Feijão P, Dias Vieira Braga M, Stoye J, Martinez FHV (2016)
A Linear Time Approximation Algorithm for the DCJ Distance for Genomes with Bounded Number of Duplicates.
In: Algorithms in Bioinformatics. WABI 2016. Frith M, Storm Pedersen CN (Eds); Lecture Notes in Bioinformatics, 9838. Cham: Springer: 293-306.
PUB | DOI
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900129
Holley G, Wittler R, Stoye J (2016)
Bloom Filter Trie: an alignment-free and reference-free data structure for pan-genome storage.
Algorithms for Molecular Biology 11: 3.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2016 | Bielefelder E-Dissertation | PUB-ID: 2902049
Dörr D (2016)
Gene family-free genome comparison.
Bielefeld: Universität Bielefeld.
PUB | PDF
 
2016 | Bielefelder E-Dissertation | PUB-ID: 2906743
Bremges A (2016)
Assembling the microbial dark matter.
Bielefeld: Universität Bielefeld.
PUB | PDF
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900943
Langenkämper D, Jakobi T, Feld D, Jelonek L, Goesmann A, Nattkemper TW (2016)
Comparison of Acceleration Techniques for Selected Low-Level Bioinformatics Operations.
Frontiers in Genetics 7: 5.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900421
Krause L, Nones K, Loffler KA, Nancarrow D, Oey H, Tang YH, Wayte NJ, Patch AM, Patel K, Brosda S, Manning S, Lampe G, Clouston A, Thomas J, Stoye J, Hussey DJ, Watson DI, Lord RV, Phillips WA, Gotley D, Smithers BM, Whiteman DC, Hayward NK, Grimmond SM, Waddell N, Barbour AP (2016)
Identification of the CIMP-like subtype and aberrant methylation of members of the chromosomal segregation and spindle assembly pathways in esophageal adenocarcinoma.
Carcinogenesis 37(4): 356-365.
PUB | DOI | WoS | PubMed | Europe PMC
 

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