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414 Publikationen

2018 | Herausgeber*in Sammelwerk | Veröffentlicht | PUB-ID: 2913920
Setubal J. C., Stadler P., & Stoye J. (Eds.) (2018). Comparative Genomics: Methods and Protocols (Methods in Molecular Biology, 1704). New York: Springer Verlag.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919012
Jaenicke, S., Albaum, S., Blumenkamp, P., Linke, B., Stoye, J., & Goesmann, A. (2018). Flexible metagenome analysis using the MGX framework. Microbiome, 6, 76. doi:10.1186/s40168-018-0460-1
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2908574
Luhmann, N., Lafond, M., Thévenin, A., Ouangraoua, A., Wittler, R., & Chauve, C. (2017). The SCJ Small Parsimony Problem for Weighted Gene Adjacencies. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 14. doi:10.1109/TCBB.2017.2661761
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2912492
Luhmann, N., Dörr, D., & Chauve, C. (2017). Comparative scaffolding and gap filling of ancient bacterial genomes applied to two ancient Yersinia pestis genomes. Microbial Genomics, 3(9). doi:10.1099/mgen.0.000123
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913556
Jünemann, S., Kleinbölting, N., Jaenicke, S., Henke, C., Hassa, J., Nelkner, J., Stolze, Y., et al. (2017). Bioinformatics for NGS-based metagenomics and the application to biogas research. Journal of Biotechnology, 261(SI), 10-23. doi:10.1016/j.jbiotec.2017.08.012
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2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2913015
Rubert, D., Medeiros, G. L., Hoshino, E. A., Dias Vieira Braga, M., Stoye, J., & Martinez, F. H. V. (2017). Algorithms for Computing the Family-Free Genomic Similarity under DCJ. In J. Meidanis & L. Nakhleh (Eds.), Lecture Notes in Bioinformatics: Vol. 10562. Comparative Genomics. RECOMB-CG 2017 (pp. 76-100). Cham: Springer Verlag. doi:10.1007/978-3-319-67979-2_5
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909057
Rubert, D., Feijão, P., Dias Vieira Braga, M., Stoye, J., & Martinez, F. H. V. (2017). Approximating the DCJ distance of balanced genomes in linear time. Algorithms for Molecular Biology, 12, 3. doi:10.1186/s13015-017-0095-y
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2017 | Bielefelder E-Dissertation | PUB-ID: 2909213
Luhmann, N. (2017). Phylogenetic assembly of paleogenomes integrating ancient DNA data. Bielefeld: Universität Bielefeld.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916552
da Silva, P. H., Machado, R., Dantas, S., & Dias Vieira Braga, M. (2017). Genomic Distance with High Indel Costs. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 14(3), 728-732. doi:10.1109/TCBB.2016.2555301
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2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2909409
Cunha, L., Dantas, S., Gagie, T., Wittler, R., Kowada, L., & Stoye, J. (2017). Fast and Simple Jumbled Indexing for Binary Run-Length Encoded Strings. Proceedings of CPM 2017, LIPIcs, 78, 19:1-19:9. doi:10.4230/LIPIcs.CPM.2017.19
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911814
Dörr, D., Balaban, M., Feijão, P., & Chauve, C. (2017). The gene family-free median of three. Algorithms for Molecular Biology, 12, 14. doi:10.1186/s13015-017-0106-z
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2017 | Preprint | Veröffentlicht | PUB-ID: 2908521
Cunha, L., Dantas, S., Gagie, T., Wittler, R., Kowada, L., & Stoye, J. (2017). Faster Jumbled Indexing for Binary Run-Length Encoded Strings. arXiv: 1702.01280
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2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2907587
Holley, G., Wittler, R., Stoye, J., & Hach, F. (2017). Dynamic Alignment-Free and Reference-Free Read Compression. Proceedings of RECOMB 2017, Lecture Notes in Bioinformatics, 10229, 50-65. doi:10.1007/978-3-319-56970-3_4
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2017 | Sammelwerksbeitrag | Im Druck | PUB-ID: 2913924
Anselmetti, Y., Luhmann, N., Bérard, S., Tannier, E., & Chauve, C. (In Press). Comparative Methods for Reconstructing Ancient Genome Organization. In J. C. Setubal, P. Stadler, & J. Stoye (Eds.), Methods in Molecular Biology. Comparative Genomics Springer Verlag.
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2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2913016
Schulz, T., Stoye, J., & Dörr, D. (2017). Finding Teams in Graphs and its Application to Spatial Gene Cluster Discovery. Proceedings of RECOMB-CG 2017, Lecture Notes in Bioinformatics, 1704, 197-212. Berlin: Springer Verlag. doi:10.1007/978-3-319-67979-2_11
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909967
Dörr, D., Kowada, L. A. B., Soares de Araujo, F. E., Deshpande, S., Dantas, S., Moret, B. M. E., & Stoye, J. (2017). New Genome Similarity Measures based on Conserved Gene Adjacencies. Journal of Computational Biology, 24(6), 616-634. doi:10.1089/cmb.2017.0065
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901477
Ahmed Raza, S. E., Langenkämper, D., Sirinukunwattana, K., Epstein, D., Nattkemper, T. W., & Rajpoot, N. M. (2016). Robust normalization protocols for multiplexed fluorescence bioimage analysis. BioData Mining, 9(1), 11. doi:10.1186/s13040-016-0088-2
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905930
Winter, S., Jahn, K., Wehner, S., Kuchenbecker, L., Marz, M., Stoye, J., & Böcker, S. (2016). Finding approximate gene clusters with GECKO 3. Nucleic Acids Research, 44(20), 9600-9610. doi:10.1093/nar/gkw843
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2016 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2903708
Rubert, D., Feijão, P., Dias Vieira Braga, M., Stoye, J., & Martinez, F. H. V. (2016). A Linear Time Approximation Algorithm for the DCJ Distance for Genomes with Bounded Number of Duplicates. In M. Frith & C. N. Storm Pedersen (Eds.), Lecture Notes in Bioinformatics: Vol. 9838. Algorithms in Bioinformatics. WABI 2016 (pp. 293-306). Cham: Springer. doi:10.1007/978-3-319-43681-4_24
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900129
Holley, G., Wittler, R., & Stoye, J. (2016). Bloom Filter Trie: an alignment-free and reference-free data structure for pan-genome storage. Algorithms for Molecular Biology, 11, 3. doi:10.1186/s13015-016-0066-8
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