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412 Publikationen

2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2912492
Luhmann N, Dörr D, Chauve C. Comparative scaffolding and gap filling of ancient bacterial genomes applied to two ancient Yersinia pestis genomes. Microbial Genomics. 2017;3(9).
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913556
Jünemann S, Kleinbölting N, Jaenicke S, et al. Bioinformatics for NGS-based metagenomics and the application to biogas research. Journal of Biotechnology. 2017;261(SI):10-23.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2913015
Rubert D, Medeiros GL, Hoshino EA, Dias Vieira Braga M, Stoye J, Martinez FHV. Algorithms for Computing the Family-Free Genomic Similarity under DCJ. In: Meidanis J, Nakhleh L, eds. Comparative Genomics. RECOMB-CG 2017. Lecture Notes in Bioinformatics. Vol 10562. Cham: Springer Verlag; 2017: 76-100.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909057
Rubert D, Feijão P, Dias Vieira Braga M, Stoye J, Martinez FHV. Approximating the DCJ distance of balanced genomes in linear time. Algorithms for Molecular Biology. 2017;12: 3.
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2017 | Bielefelder E-Dissertation | PUB-ID: 2909213
Luhmann N. Phylogenetic assembly of paleogenomes integrating ancient DNA data. Bielefeld: Universität Bielefeld; 2017.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916552
da Silva PH, Machado R, Dantas S, Dias Vieira Braga M. Genomic Distance with High Indel Costs. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 2017;14(3):728-732.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2909409
Cunha L, Dantas S, Gagie T, Wittler R, Kowada L, Stoye J. Fast and Simple Jumbled Indexing for Binary Run-Length Encoded Strings. In: Proceedings of CPM 2017. LIPIcs. Vol 78. 2017: 19:1-19:9.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911814
Dörr D, Balaban M, Feijão P, Chauve C. The gene family-free median of three. Algorithms for Molecular Biology. 2017;12: 14.
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2017 | Preprint | Veröffentlicht | PUB-ID: 2908521
Cunha L, Dantas S, Gagie T, Wittler R, Kowada L, Stoye J. Faster Jumbled Indexing for Binary Run-Length Encoded Strings. arXiv: 1702.01280. 2017.
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2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2907587
Holley G, Wittler R, Stoye J, Hach F. Dynamic Alignment-Free and Reference-Free Read Compression. In: Proceedings of RECOMB 2017. Lecture Notes in Bioinformatics. Vol 10229. 2017: 50-65.
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2017 | Sammelwerksbeitrag | Im Druck | PUB-ID: 2913924
Anselmetti Y, Luhmann N, Bérard S, Tannier E, Chauve C. Comparative Methods for Reconstructing Ancient Genome Organization. In: Setubal JC, Stadler P, Stoye J, eds. Comparative Genomics. Methods in Molecular Biology. Springer Verlag; In Press.
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2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2913016
Schulz T, Stoye J, Dörr D. Finding Teams in Graphs and its Application to Spatial Gene Cluster Discovery. In: Proceedings of RECOMB-CG 2017. Lecture Notes in Bioinformatics. Vol 1704. Berlin: Springer Verlag; 2017: 197-212.
PUB | DOI
 
2017 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2908574
Luhmann N, Lafond M, Thévenin A, Ouangraoua A, Wittler R, Chauve C. The SCJ Small Parsimony Problem for Weighted Gene Adjacencies. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 2017;14.
PUB | DOI | PubMed | Europe PMC
 
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909967
Dörr D, Kowada LAB, Soares de Araujo FE, et al. New Genome Similarity Measures based on Conserved Gene Adjacencies. Journal of Computational Biology. 2017;24(6):616-634.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901477
Ahmed Raza SE, Langenkämper D, Sirinukunwattana K, Epstein D, Nattkemper TW, Rajpoot NM. Robust normalization protocols for multiplexed fluorescence bioimage analysis. BioData Mining. 2016;9(1): 11.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905930
Winter S, Jahn K, Wehner S, et al. Finding approximate gene clusters with GECKO 3. Nucleic Acids Research. 2016;44(20):9600-9610.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2903708
Rubert D, Feijão P, Dias Vieira Braga M, Stoye J, Martinez FHV. A Linear Time Approximation Algorithm for the DCJ Distance for Genomes with Bounded Number of Duplicates. In: Frith M, Storm Pedersen CN, eds. Algorithms in Bioinformatics. WABI 2016. Lecture Notes in Bioinformatics. Vol 9838. Cham: Springer; 2016: 293-306.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900129
Holley G, Wittler R, Stoye J. Bloom Filter Trie: an alignment-free and reference-free data structure for pan-genome storage. Algorithms for Molecular Biology. 2016;11: 3.
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2016 | Bielefelder E-Dissertation | PUB-ID: 2902049
Dörr D. Gene family-free genome comparison. Bielefeld: Universität Bielefeld; 2016.
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2016 | Bielefelder E-Dissertation | PUB-ID: 2906743
Bremges A. Assembling the microbial dark matter. Bielefeld: Universität Bielefeld; 2016.
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