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410 Publikationen

2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2913015
Algorithms for Computing the Family-Free Genomic Similarity under DCJ
Rubert D, Medeiros GL, Hoshino EA, Dias Vieira Braga M, Stoye J, Martinez FHV (2017)
In: Comparative Genomics. RECOMB-CG 2017. Meidanis J, Nakhleh L (Eds); Lecture Notes in Bioinformatics, 10562. Cham: Springer Verlag: 76-100.
PUB | DOI
 
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909057
Approximating the DCJ distance of balanced genomes in linear time
Rubert D, Feijão P, Dias Vieira Braga M, Stoye J, Martinez FHV (2017)
Algorithms for Molecular Biology 12: 3.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2017 | Bielefelder E-Dissertation | PUB-ID: 2909213
Phylogenetic assembly of paleogenomes integrating ancient DNA data
Luhmann N (2017)
Bielefeld: Universität Bielefeld.
PUB | PDF
 
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916552
Genomic Distance with High Indel Costs
da Silva PH, Machado R, Dantas S, Dias Vieira Braga M (2017)
IEEE/ACM Transactions on Computational Biology and Bioinformatics 14(3): 728-732.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2909409
Fast and Simple Jumbled Indexing for Binary Run-Length Encoded Strings
Cunha L, Dantas S, Gagie T, Wittler R, Kowada L, Stoye J (2017)
In: Proceedings of CPM 2017. LIPIcs, 78. 19:1-19:9.
PUB | DOI
 
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911814
The gene family-free median of three
Dörr D, Balaban M, Feijão P, Chauve C (2017)
Algorithms for Molecular Biology 12: 14.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Preprint | Veröffentlicht | PUB-ID: 2908521
Faster Jumbled Indexing for Binary Run-Length Encoded Strings
Cunha L, Dantas S, Gagie T, Wittler R, Kowada L, Stoye J (2017)
arXiv: 1702.01280.
PUB
 
2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2907587
Dynamic Alignment-Free and Reference-Free Read Compression
Holley G, Wittler R, Stoye J, Hach F (2017)
In: Proceedings of RECOMB 2017. Lecture Notes in Bioinformatics, 10229. 50-65.
PUB | DOI
 
2017 | Sammelwerksbeitrag | Im Druck | PUB-ID: 2913924
Comparative Methods for Reconstructing Ancient Genome Organization
Anselmetti Y, Luhmann N, Bérard S, Tannier E, Chauve C (In Press)
In: Comparative Genomics. Setubal JC, Stadler P, Stoye J (Eds); Methods in Molecular Biology. Springer Verlag.
PUB
 
2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2913016
Finding Teams in Graphs and its Application to Spatial Gene Cluster Discovery
Schulz T, Stoye J, Dörr D (2017)
In: Proceedings of RECOMB-CG 2017. Lecture Notes in Bioinformatics, 1704. Berlin: Springer Verlag: 197-212.
PUB | DOI
 
2017 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2908574
The SCJ Small Parsimony Problem for Weighted Gene Adjacencies
Luhmann N, Lafond M, Thévenin A, Ouangraoua A, Wittler R, Chauve C (2017)
IEEE/ACM Transactions on Computational Biology and Bioinformatics 14.
PUB | DOI | PubMed | Europe PMC
 
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909967
New Genome Similarity Measures based on Conserved Gene Adjacencies
Dörr D, Kowada LAB, Soares de Araujo FE, Deshpande S, Dantas S, Moret BME, Stoye J (2017)
Journal of Computational Biology 24(6): 616-634.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901477
Robust normalization protocols for multiplexed fluorescence bioimage analysis
Ahmed Raza SE, Langenkämper D, Sirinukunwattana K, Epstein D, Nattkemper TW, Rajpoot NM (2016)
BioData Mining 9(1): 11.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905930
Finding approximate gene clusters with GECKO 3
Winter S, Jahn K, Wehner S, Kuchenbecker L, Marz M, Stoye J, Böcker S (2016)
Nucleic Acids Research 44(20): 9600-9610.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2903708
A Linear Time Approximation Algorithm for the DCJ Distance for Genomes with Bounded Number of Duplicates
Rubert D, Feijão P, Dias Vieira Braga M, Stoye J, Martinez FHV (2016)
In: Algorithms in Bioinformatics. WABI 2016. Frith M, Storm Pedersen CN (Eds); Lecture Notes in Bioinformatics, 9838. Cham: Springer: 293-306.
PUB | DOI
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900129
Bloom Filter Trie: an alignment-free and reference-free data structure for pan-genome storage
Holley G, Wittler R, Stoye J (2016)
Algorithms for Molecular Biology 11: 3.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2016 | Bielefelder E-Dissertation | PUB-ID: 2902049
Gene family-free genome comparison
Dörr D (2016)
Bielefeld: Universität Bielefeld.
PUB | PDF
 
2016 | Bielefelder E-Dissertation | PUB-ID: 2906743
Assembling the microbial dark matter
Bremges A (2016)
Bielefeld: Universität Bielefeld.
PUB | PDF
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900943
Comparison of Acceleration Techniques for Selected Low-Level Bioinformatics Operations
Langenkämper D, Jakobi T, Feld D, Jelonek L, Goesmann A, Nattkemper TW (2016)
Frontiers in Genetics 7: 5.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2900111
New Genome Similarity Measures based on Conserved Gene Adjacencies
Kowada LAB, Doerr D, Dantas S, Stoye J (2016)
In: Research in Computational Molecular Biology. RECOMB 2016. Singh M (Ed); Lecture Notes in Bioinformatics (LNBI), 9649. Springer: 204-224.
PUB | DOI
 

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