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413 Publikationen

2019 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2937148
Alanko, J., Bannai, H., Cazaux, B., Peterlongo, P., Stoye, J.: Finding All Maximal Perfect Haplotype Blocks in Linear Time. Proceedings of WABI 2019. Leibniz International Proceedings in Informatics. LIPIcs. 143, p. 8:1-8:9. Schloss Dagstuhl, Leibniz-Zentrum für Informatik , Dagstuhl (2019).
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2019 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2936900
Wittler, R.: Alignment- and reference-free phylogenomics with colored de Bruijn graphs. In: Huber, K. and Gusfield, D. (eds.) Proceedings of WABI 2019. LIPIcs. 143, Schloss Dagstuhl--Leibniz-Zentrum fuer Informatik, Dagstuhl, Germany (2019).
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2019 | Datenpublikation | PUB-ID: 2936848
Dörr, D., Rubert, D.: Supplementary Data for "Analysis of local genome rearrangement improves resolution of ancestral genomic maps in plants". Bielefeld University (2019).
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2019 | Herausgeber*in Sammelwerk | Veröffentlicht | PUB-ID: 2935998
Setubal, J.C., Stoye, J., Dutilh, B.E. eds: Computational Methods for Microbiome Analysis. Frontiers Research Topics. Frontiers Media, Lausanne (2019).
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2019 | Preprint | PUB-ID: 2935604
Wittler, R.: Alignment- and reference-free phylogenomics with colored de-Bruijn graphs. arXiv:1905.04165. (2019).
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2019 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2932883
Dörr, D., Stoye, J.: A Perspective on Comparative and Functional Genomics. In: Warnow, T. (ed.) Bioinformatics and Phylogenetics. Computational Biology. 29, p. 361-372. Springer , Cham (2019).
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933161
Hassan, H., Shanak, S.: GOTrapper. A tool to navigate through branches of gene ontology hierarchy. BMC Bioinformatics. 20, : 20 (2019).
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932884
Oey, H., Zakrzewski, M., Gravermann, K., Young, N.D., Korhonen, P.K., Gobert, G.N., Nawaratna, S., Hasan, S., Martínez, D.M., You, H., Lavin, M., Jones, M., Ragan, M.A., Stoye, J., Oleaga, A., Emery, A.M., Webster, B., Rollinson, D., Gasser, R.B., McManus, D.P., Krause, L.: Whole-genome sequence of the bovine blood fluke Schistosoma bovis supports interspecific hybridization with S. haematobium. PLOS Pathogens. 15, : e1007513 (2019).
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919005
Schulz, T., Stoye, J., Dörr, D.: GraphTeams. A method for discovering spatial gene clusters in Hi-C sequencing data. BMC Genomics. 19, : 308 (2018).
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919006
Rubert, D., Hoshino, E.A., Dias Vieira Braga, M., Stoye, J., Martinez, F.H.V.: Computing the family-free DCJ similarity. BMC Bioinformatics. 19, : 152 (2018).
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918481
Luhmann, N., Chauve, C., Stoye, J., Wittler, R.: Scaffolding of Ancient Contigs and Ancestral Reconstruction in a Phylogenetic Framework. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 15, 2094-2100 (2018).
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932754
Bhatia, S., Feijão, P., Francis, A.R.: Position and Content Paradigms in Genome Rearrangements. The Wild and Crazy World of Permutations in Genomics. BULLETIN OF MATHEMATICAL BIOLOGY. 80, 3227-3246 (2018).
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919346
Hagenfeld, D., Koch, R., Jünemann, S., Prior, K., Harks, I., Eickholz, P., Hoffmann, T., Kim, T.-S., Kocher, T., Meyle, J., Kaner, D., Schlagenhauf, U., Ehmke, B., Harmsen, D.: Do we treat our patients or rather periodontal microbes with adjunctive antibiotics in periodontal therapy? A 16S rDNA microbial community analysis. PLOS ONE. 13, : e0195534 (2018).
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Bielefelder E-Dissertation | PUB-ID: 2918485
Holley, G.: Pan-genome Search and Storage. Universität Bielefeld, Bielefeld (2018).
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2018 | Bielefelder E-Dissertation | PUB-ID: 2919356
Willing, E.: On Distance and Sorting of the Double Cut-and-Join and the Inversion-*indel* Model. Universität Bielefeld, Bielefeld (2018).
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2018 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2930445
Cunha, L., Diekmann, Y., Kowada, L., Stoye, J.: Identifying Maximal Perfect Haplotype Blocks. Proceedings of BSB 2018. LNBI. 11228, p. 26-37. Springer Verlag (2018).
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930268
Holley, G., Wittler, R., Stoye, J., Hach, F.: Dynamic Alignment-Free and Reference-Free Read Compression. JOURNAL OF COMPUTATIONAL BIOLOGY. 25, 825-836 (2018).
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2913921
Zekic, T., Holley, G., Stoye, J.: Pan-genome Storage and Analysis Techniques. In: Setubal, J.C., Stadler, P., and Stoye, J. (eds.) Comparative Genomics. Methods and Protocols. Methods in Molecular Biology. 1704, p. 29-53. Springer Verlag, New York (2018).
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2018 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2913922
Dörr, D., Feijão, P., Stoye, J.: Family-Free Genome Comparison. In: Setubal, J.C., Stadler, P., and Stoye, J. (eds.) Comparative Genomics: Methods and Protocols. Methods in Molecular Biology. 1704, p. 331-342. Springer Verlag, New York (2018).
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2018 | Herausgeber*in Sammelwerk | Veröffentlicht | PUB-ID: 2913920
Setubal, J.C., Stadler, P., Stoye, J. eds: Comparative Genomics: Methods and Protocols. Methods in Molecular Biology, 1704. Springer Verlag, New York (2018).
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