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414 Publikationen

2019 | Zeitschriftenaufsatz | Im Druck | PUB-ID: 2937712
Rubert, Diego, Martinez, Fábio Henrique Viduani, Stoye, Jens, and Dörr, Daniel. In Press. “Analysis of local genome rearrangement improves resolution of ancestral genomic maps in plants”. BMC Genomics.
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2019 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2937148
Alanko, Jarno, Bannai, Hideo, Cazaux, Bastien, Peterlongo, Pierre, and Stoye, Jens. 2019. “Finding All Maximal Perfect Haplotype Blocks in Linear Time”. In Proceedings of WABI 2019, 143:8:1-8:9. Leibniz International Proceedings in Informatics. LIPIcs. Dagstuhl: Schloss Dagstuhl, Leibniz-Zentrum für Informatik .
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2019 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2936900
Wittler, Roland. 2019. “Alignment- and reference-free phylogenomics with colored de Bruijn graphs”. In Proceedings of WABI 2019, ed. Katharina Huber and Dan Gusfield. Vol. 143. LIPIcs. Dagstuhl, Germany: Schloss Dagstuhl--Leibniz-Zentrum fuer Informatik.
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2019 | Datenpublikation | PUB-ID: 2936848
Dörr, Daniel, and Rubert, Diego. 2019. Supplementary Data for "Analysis of local genome rearrangement improves resolution of ancestral genomic maps in plants". Bielefeld University.
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2019 | Herausgeber*in Sammelwerk | Veröffentlicht | PUB-ID: 2935998
Setubal, João C., Stoye, Jens, and Dutilh, Bas E., eds. 2019. Computational Methods for Microbiome Analysis. Frontiers Research Topics. Lausanne: Frontiers Media.
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2019 | Preprint | PUB-ID: 2935604
Wittler, Roland. 2019. “Alignment- and reference-free phylogenomics with colored de-Bruijn graphs”. arXiv:1905.04165.
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2019 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2932883
Dörr, Daniel, and Stoye, Jens. 2019. “A Perspective on Comparative and Functional Genomics”. In Bioinformatics and Phylogenetics, ed. Tandy Warnow, 29:361-372. Computational Biology. Cham: Springer .
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933161
Hassan, Hezha, and Shanak, Siba. 2019. “GOTrapper. A tool to navigate through branches of gene ontology hierarchy”. BMC Bioinformatics 20 (1): 20.
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932884
Oey, Harald, Zakrzewski, Martha, Gravermann, Kerstin, Young, Neil D., Korhonen, Pasi K., Gobert, Geoffrey N., Nawaratna, Sujeevi, et al. 2019. “Whole-genome sequence of the bovine blood fluke Schistosoma bovis supports interspecific hybridization with S. haematobium”. PLOS Pathogens 15 (1): e1007513.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919005
Schulz, Tizian, Stoye, Jens, and Dörr, Daniel. 2018. “GraphTeams. A method for discovering spatial gene clusters in Hi-C sequencing data”. BMC Genomics 19 (Suppl. 5): 308.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919006
Rubert, Diego, Hoshino, Edna A., Dias Vieira Braga, Marília, Stoye, Jens, and Martinez, Fábio Henrique Viduani. 2018. “Computing the family-free DCJ similarity”. BMC Bioinformatics 19 (Suppl. 6): 152.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918481
Luhmann, Nina, Chauve, Cedric, Stoye, Jens, and Wittler, Roland. 2018. “Scaffolding of Ancient Contigs and Ancestral Reconstruction in a Phylogenetic Framework”. IEEE/ACM Transactions on Computational Biology and Bioinformatics 15 (6): 2094-2100.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932754
Bhatia, Sangeeta, Feijão, Pedro, and Francis, Andrew R. 2018. “Position and Content Paradigms in Genome Rearrangements. The Wild and Crazy World of Permutations in Genomics”. BULLETIN OF MATHEMATICAL BIOLOGY 80 (12): 3227-3246.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919346
Hagenfeld, Daniel, Koch, Raphael, Jünemann, Sebastian, Prior, Karola, Harks, Inga, Eickholz, Peter, Hoffmann, Thomas, et al. 2018. “Do we treat our patients or rather periodontal microbes with adjunctive antibiotics in periodontal therapy? A 16S rDNA microbial community analysis”. PLOS ONE 13 (4): e0195534.
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2018 | Bielefelder E-Dissertation | PUB-ID: 2919356
Willing, Eyla. 2018. On Distance and Sorting of the Double Cut-and-Join and the Inversion-*indel* Model. Bielefeld: Universität Bielefeld.
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2018 | Bielefelder E-Dissertation | PUB-ID: 2918485
Holley, Guillaume. 2018. Pan-genome Search and Storage. Bielefeld: Universität Bielefeld.
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2018 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2930445
Cunha, Luís, Diekmann, Yoan, Kowada, Luis, and Stoye, Jens. 2018. “Identifying Maximal Perfect Haplotype Blocks”. In Proceedings of BSB 2018, 11228:26-37. LNBI. Springer Verlag.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930268
Holley, Guillaume, Wittler, Roland, Stoye, Jens, and Hach, Faraz. 2018. “Dynamic Alignment-Free and Reference-Free Read Compression”. JOURNAL OF COMPUTATIONAL BIOLOGY 25 (7): 825-836.
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2018 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2913921
Zekic, Tina, Holley, Guillaume, and Stoye, Jens. 2018. “Pan-genome Storage and Analysis Techniques”. In Comparative Genomics. Methods and Protocols, ed. João C. Setubal, Peter Stadler, and Jens Stoye, 1704:29-53. Methods in Molecular Biology. New York: Springer Verlag.
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2018 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2913922
Dörr, Daniel, Feijão, Pedro, and Stoye, Jens. 2018. “Family-Free Genome Comparison”. In Comparative Genomics: Methods and Protocols, ed. João C. Setubal, Peter Stadler, and Jens Stoye, 1704:331-342. Methods in Molecular Biology. New York: Springer Verlag.
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