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414 Publikationen

2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2641228
Jünemann, S., Sedlazeck, F. J., Prior, K., Albersmeier, A., John, U., Kalinowski, J., Mellmann, A., et al. (2013). Corrigendum: Updating benchtop sequencing performance comparison. Nature biotechnology, 31(12), 1148. doi:10.1038/nbt1213-1148e
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2492825
Reuther, S., Schmetzer, H., Schuster, F. R., Krell, P., Grabrucker, C., Liepert, A., Kroell, T., et al. (2013). In vitro-induced response patterns of antileukemic T cells: characterization by spectratyping and immunophenotyping. Clinical and Experimental Medicine, 13(1), 29-48. doi:10.1007/s10238-012-0180-y
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2013 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2611643
Bergeron, A., & Stoye, J. (2013). The Genesis of the DCJ Formula. In C. Chauve, N. El-Mabrouk, & E. Tannier (Eds.), Computational Biology Series: Vol. 19. Models and Algorithms for Genome Evolution (pp. 63-81). Springer Verlag. doi:10.1007/978-1-4471-5298-9_5
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2013 | Bielefelder E-Dissertation | PUB-ID: 2604883
Blom, J. (2013). Comparative genomics on gene and single nucleotide level. Bielefeld: Universitätsbibliothek.
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2013 | Bielefelder E-Dissertation | PUB-ID: 2594322
Janowski, S. J. (2013). VANESA - A bioinformatics software application for the modeling, visualization, analysis, and simulation of biological networks in systems biology applications. Bielefeld: Bielefeld University.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2575361
Krell, P., Reuther, S., Fischer, U., Keller, T., Weber, S., Gombert, M., Schuster, F. R., et al. (2013). Next-generation-sequencing-spectratyping reveals public T-cell receptor repertoires in pediatric very severe aplastic anemia and identifies a beta chain CDR3 sequence associated with hepatitis-induced pathogenesis. Haematologica, 98(9), 1388-1396. doi:10.3324/haematol.2012.069708
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2013 | Lexikoneintrag | Veröffentlicht | PUB-ID: 2577323
Gerlach, W., & Stoye, J. (2013). Taxonomic classification of metagenomic shotgun sequences with CARMA3. In K. E. Nelson (Ed.), Encyclopedia of Metagenomics Springer Verlag. doi:10.1007/978-1-4614-6418-1_751-2
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2625914
Bergmann, T., Maeder, U., Fiebich, M., Dickob, M., Nattkemper, T. W., & Anselmetti, D. (2013). Categorization of two-photon microscopy images of human cartilage into states of osteoarthritis. Osteoarthritis And Cartilage, 21(8), 1074-1082. doi:10.1016/j.joca.2013.04.019
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2566922
Jünemann, S., Sedlazeck, F. J., Prior, K., Albersmeier, A., John, U., Kalinowski, J., Mellmann, A., et al. (2013). Updating benchtop sequencing performance comparison. Nature Biotechnology, 31(4), 294-296. doi:10.1038/nbt.2522
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2013 | Konferenzband | Veröffentlicht | PUB-ID: 2616537
Darling A., & Stoye J. (Eds.) (2013). Algorithms in Bioinformatics. Lecture Notes in Bioinformatics, 8126. doi:10.1007/978-3-642-40453-5
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2611633
Jahn, K., Winter, S., Stoye, J., & Böcker, S. (2013). Statistics for approximate gene clusters. BMC Bioinformatics, 14(Suppl 15: Proc. of RECOMB-CG 2013), S14. doi:10.1186/1471-2105-14-S15-S14
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548236
Schwientek, P., Wendler, S., Neshat, A., Eirich, C., Rückert, C., Klein, A., Wehmeier, U. F., et al. (2013). Comparative RNA-sequencing of the acarbose producer Actinoplanes sp. SE50/110 cultivated in different growth media. Journal of Biotechnology, 167(2), 166-177. doi:10.1016/j.jbiotec.2012.10.019
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548286
Luque-Almagro, V. M., Acera, F., Igeño, M. I., Wibberg, D., Roldán, M. D., Sáez, L. P., Hennig, M., et al. (2013). Draft whole genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344. Environmental Microbiology, 15(1), 253-270. doi:10.1111/j.1462-2920.2012.02875.x
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2552092
Wittler, R. (2013). Unraveling overlapping deletions by agglomerative clustering. BMC Genomics, 14(Suppl 1), S12. doi:10.1186/1471-2164-14-S1-S12
PUB | Dateien verfügbar | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529309
Bolzan de Campos, S., Youn, J. - W., Farina, R., Jaenicke, S., Jünemann, S., Szczepanowski, R., Beneduzi, A., et al. (2013). Changes in Root Bacterial Communities Associated to Two Different Development Stages of Canola (*Brassica napus* L. var oleifera) Evaluated through Next-Generation Sequencing. Microbial Ecology, 65(3), 593-601. doi:10.1007/s00248-012-0132-9
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2659331
Feijão, P., & Meidanis, J. (2013). Extending the Algebraic Formalism for Genome Rearrangements to Include Linear Chromosomes. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 10(4), 819-831. doi:10.1109/TCBB.2012.161
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529202
Zakrzewski, M., Bekel, T., Ander, C., Pühler, A., Rupp, O., Stoye, J., Schlüter, A., et al. (2013). MetaSAMS - A novel software platform for taxonomic classification, functional annotation and comparative analysis of metagenome datasets. Journal of Biotechnology, 167(2), 156-165. doi:10.1016/j.jbiotec.2012.09.013
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2560353
Dörr, D., Gronau, I., Moran, S., & Yavneh, I. (2012). Stochastic errors vs. modeling errors in distance based phylogenetic reconstructions. Algorithms for Molecular Biology, 7(1), 22. doi:10.1186/1748-7188-7-22
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2512642
Dörr, D., Thévenin, A., & Stoye, J. (2012). Gene family assignment-free comparative genomics. BMC Bioinformatics, 13(Suppl 19: Proc. of RECOMB-CG 2012), S3. doi:10.1186/1471-2105-13-S19-S3
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2498160
Schröder, J., Maus, I., Meyer, K., Wördemann, S., Blom, J., Jaenicke, S., Schneider, J., et al. (2012). Complete genome sequence, lifestyle, and multi-drug resistance of the human pathogen Corynebacterium resistens DSM 45100 isolated from blood samples of a leukemia patient. BMC Genomics, 13(1), 141. doi:10.1186/1471-2164-13-141
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2517239
Hoffmann, N., Keck, M., Neuweger, H., Wilhelm, M., Högy, P., Niehaus, K., & Stoye, J. (2012). Combining peak- and chromatogram-based retention time alignment algorithms for multiple chromatography-mass spectrometry datasets. BMC Bioinformatics, 13(1), 21. doi:10.1186/1471-2105-13-21
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2512644
Jahn, K., Sudek, H., & Stoye, J. (2012). Multiple genome comparison based on overlap regions of pairwise local alignments. BMC Bioinformatics, 13(Suppl. 19: Proc. of RECOMB-CG 2012), S7. doi:10.1186/1471-2105-13-S19-S7
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2513347
Trost, E., Blom, J., de Castro Soares, S., Huang, I. - H., Al-Dilaimi, A., Schröder, J., Jaenicke, S., et al. (2012). Pangenomic Study of Corynebacterium diphtheriae That Provides Insights into the Genomic Diversity of Pathogenic Isolates from Cases of Classical Diphtheria, Endocarditis, and Pneumonia. Journal of bacteriology, 194(12), 3199-3215. doi:10.1128/JB.00183-12
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2490949
Zschuttig, A., Zimmermann, K., Blom, J., Goesmann, A., Pohlmann, C., & Gunzer, F. (2012). Identification and Characterization of Microcin S, a New Antibacterial Peptide Produced by Probiotic Escherichia coli G3/10. PLoS ONE, 7(3), e33351. doi:10.1371/journal.pone.0033351
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2709879
Doerr, D., Hu, K., Renly, S., Edlund, S., & Davis, M. (2012). Accelerating investigation of food-borne disease outbreaks using pro-active geospatial modeling of food supply chains. HealthGIS '12: Proceedings of the First ACM SIGSPATIAL International Workshop on Use of GIS in Public Health, 44-47.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2527519
Ruijter, J. M., Pfaffl, M. W., Zhao, S., Spiess, A. N., Boggy, G., Blom, J., Rutledge, R. G., et al. (2012). Evaluation of qPCR curve analysis methods for reliable biomarker discovery: Bias, resolution, precision, and implications. Methods. A companion to methods in enzymology (San Diego, Calif.), 59(1), 32-46. doi:10.1016/j.ymeth.2012.08.011
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2553484
Marschall, T., Herms, I., Kaltenbach, H. - M., & Rahmann, S. (2012). Probabilistic Arithmetic Automata and Their Applications. Ieee/Acm Transactions On Computational Biology And Bioinformatics, 9(6), 1737-1750. doi:10.1109/TCBB.2012.109
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2012 | Bielefelder E-Dissertation | PUB-ID: 2468026
Gerlach, W. (2012). Taxonomic classification of metagenomic sequences. Bielefeld: Universität.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2553300
Manuch, J., Patterson, M., Wittler, R., Chauve, C., & Tannier, E. (2012). Linearization of ancestral multichromosomal genomes. BMC Bioinformatics, 13(Proc. of RECOMB-CG 2012). doi:10.1186/1471-2105-13-S19-S11
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2659289
Canavez, F. C., Luche, D. D., Stothard, P., Leite, K. R. M., Sousa-Canavez, J. M., Plastow, G., Meidanis, J., et al. (2012). Genome Sequence and Assembly of Bos indicus. Journal of Heredity, 103(3), 342-348. doi:10.1093/jhered/esr153
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2012 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2659385
Mira, C., Feijão, P., Souza, M. A., Moura, A., Meidanis, J., Lima, G., Schmitz, R., et al. (2012). A GRASP-based Heuristic for the Project Portfolio Selection Problem. 2012 IEEE 15th International Conference on Computational Science and Engineering, 36-41. doi:10.1109/ICCSE.2012.102
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2553455
De Maayer, P., Chan, W. - Y., Blom, J., Venter, S. N., Duffy, B., Smits, T. H. M., & Coutinho, T. A. (2012). The large universal Pantoea plasmid LPP-1 plays a major role in biological and ecological diversification. Bmc Genomics, 13(1), 625. doi:10.1186/1471-2164-13-625
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2486060
Schwientek, P., Szczepanowski, R., Rückert, C., Kalinowski, J., Klein, A., Selber, K., Wehmeier, U. F., et al. (2012). The complete genome sequence of the acarbose producer Actinoplanes sp. SE50/110. BMC Genomics, 13(1), 112. doi:10.1186/1471-2164-13-112
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2659280
Biller, P., Feijão, P., & Meidanis, J. (2012). Rearrangement-Based Phylogeny Using the Single-Cut-or-Join Operation. IEEE/ACM transactions on computational biology and bioinformatics, 10(1), 122-134. doi:10.1109/TCBB.2012.168
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2012 | Konferenzband | Veröffentlicht | PUB-ID: 2510416
Kärkkäinen J., & Stoye J. (Eds.) (2012). Combinatorial Pattern Matching. Lecture Notes in Computer Science, 7354. doi:10.1007/978-3-642-31265-6
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2012 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2468382
Hoffmann, N., & Stoye, J. (2012). Generic Software Frameworks for GC-MS Based Metabolomics. In U. Roessner (Ed.), Metabolomics (pp. 73-98). InTech. doi:10.5772/31224
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2510984
Hilker, R., Sickinger, C., Pedersen, C. N. S., & Stoye, J. (2012). UniMoG - A unifying framework for genomic distance calculation and sorting based on DCJ. Bioinformatics, 28(19), 2509-2511. doi:10.1093/bioinformatics/bts440
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2542210
Parreira, V. R., Costa, M., Eikmeyer, F. G., Blom, J., & Prescott, J. F. (2012). Sequence of Two Plasmids from Clostridium perfringens Chicken Necrotic Enteritis Isolates and Comparison with C. perfringens Conjugative Plasmids. PLoS ONE, 7(11), e49753. doi:10.1371/journal.pone.0049753
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2012 | Bielefelder E-Dissertation | PUB-ID: 2533144
Zakrzewski, M. (2012). Development of computational methods for the analysis of metagenome and metatranscriptome data. Bielefeld: Universität Bielefeld.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2493233
Burcsi, P., Cicalese, F., Fici, G., & Lipták, Z. (2012). ALGORITHMS FOR JUMBLED PATTERN MATCHING IN STRINGS. International Journal of Foundations of Computer Science, 23(02), 357-374. doi:10.1142/S0129054112400175
PUB | DOI | WoS | arXiv
 
2012 | Bielefelder E-Dissertation | PUB-ID: 2517237
Bunkowski, A. (2012). MCC-IMS data analysis using automated spectra processing and explorative visualisation methods. Bielefeld: Bielefeld University.
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2012 | Bielefelder E-Dissertation | PUB-ID: 2484427
Schwientek, P. (2012). Genomics and transcriptomics of the industrial acarbose producer Actinoplanes sp. SE50/110. Bielefeld: Universität Bielefeld.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526281
Zischka, M., Kuenne, C., Blom, J., Dabrowski, P. W., Linke, B., Hain, T., Nitsche, A., et al. (2012). Complete Genome Sequence of the Porcine Isolate Enterococcus faecalis D32. Journal of Bacteriology, 194(19), 5490-5491. doi:10.1128/JB.01298-12
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526298
Maus, I., Wibberg, D., Stantscheff, R., Eikmeyer, F. G., Seffner, A., Boelter, J., Szczepanowski, R., et al. (2012). Complete Genome Sequence of the Hydrogenotrophic, Methanogenic Archaeon Methanoculleus bourgensis Strain MS2T, Isolated from a Sewage Sludge Digester. Journal of Bacteriology, 194(19), 5487-5488. doi:10.1128/JB.01292-12
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526933
Dohrmann, A. B., Küting, M., Jünemann, S., Jaenicke, S., Schlüter, A., & Tebbe, C. C. (2012). Importance of rare taxa for bacterial diversity in the rhizosphere of Bt- and conventional maize varieties. The ISME journal, 7(1), 37-49. doi:10.1038/ismej.2012.77
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2517230
Jünemann, S., Prior, K., Szczepanowski, R., Harks, I., Ehmke, B., Goesmann, A., Stoye, J., et al. (2012). Bacterial Community Shift in Treated Periodontitis Patients Revealed by Ion Torrent 16S rRNA Gene Amplicon Sequencing. PLoS ONE, 7(8), e41606. doi:10.1371/journal.pone.0041606
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2501312
Gorzolka, K., Lissel, M., Kessler, N., Loch-Ahring, S., & Niehaus, K. (2012). Metabolite fingerprinting of barley whole seeds, endosperms, and embryos during industrial malting. Journal of Biotechnology, 159(3), 177-187. doi:10.1016/j.jbiotec.2012.03.012
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2490286
Vogel, U., Szczepanowski, R., Claus, H., Jünemann, S., Prior, K., & Harmsen, D. (2012). Ion Torrent PGM sequencing for genomic typing of Neisseria meningitidis for rapid determination of multiple layers of typing information. Journal of clinical microbiology, 50(6), 1889-1894. doi:10.1128/JCM.00038-12
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2396558
Dias Vieira Braga, M., Machado, R., Ribeiro, L. C., & Stoye, J. (2011). On the weight of indels in genomic distances. BMC Bioinformatics, 12(Suppl 9: RECOMB-CG 2011), S13. doi:10.1186/1471-2105-12-S9-S13
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2396509
Dias Vieira Braga, M., Machado, R., Ribeiro, L. C., & Stoye, J. (2011). Genomic distance under gene substitutions. BMC Bioinformatics, 12(Suppl 9: Proc. of RECOMB-CG 2011), S8. doi:10.1186/1471-2105-12-S9-S8
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