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421 Publikationen

2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2674387
Hilker, Rolf, Stadermann, Kai Bernd, Doppmeier, Daniel, Kalinowski, Jörn, Stoye, Jens, Straube, Jasmin, Winnebald, Jörn, and Goesmann, Alexander. 2014. “ReadXplorer - Visualization and Analysis of Mapped Sequences”. Bioinformatics 30 (16): 2247-2254.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2665038
Schwientek, Patrick, Neshat, Armin, Kalinowski, Jörn, Klein, Andreas, Rückert, Christian, Schneiker-Bekel, Susanne, Wendler, Sergej, Stoye, Jens, and Pühler, Alfred. 2014. “Improving the genome annotation of the acarbose producer Actinoplanes sp. SE50/110 by sequencing enriched 5'-ends of primary transcripts”. Journal of Biotechnology 190: 85-95.
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2014 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2690122
Luhmann, Nina, Chauve, Cedric, Stoye, Jens, and Wittler, Roland. 2014. “Scaffolding of Ancient Contigs and Ancestral Reconstruction in a Phylogenetic Framework”. In Proc. of BSB 2014, ed. Campos Sérgio, 8826:135-143. LNBI. Springer Verlag.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2685988
Jakobi, Tobias, Brinkrolf, Karina, Tauch, Andreas, Noll, Thomas, Stoye, Jens, Pühler, Alfred, and Goesmann, Alexander. 2014. “Discovery of transcription start sites in the Chinese hamster genome by next-generation RNA sequencing”. Journal of Biotechnology 190: 64-75.
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2014 | Bielefelder E-Dissertation | PUB-ID: 2677466 OA
Hoffmann, Nils. 2014. Computational methods for high-throughput metabolomics. Bielefeld: Universität Bielefeld.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2691246
Fueller, Elisa, Schaefer, Daniel, Fischer, Ute, Krell, Pina, Stanulla, Martin, Borkhardt, Arndt, and Slany, Robert K. 2014. “Genomic Inverse PCR for Exploration of Ligated Breakpoints (GIPFEL), a New Method to Detect Translocations in Leukemia”. PloS one 9 (8): 104419.
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2014 | Lexikoneintrag | Veröffentlicht | PUB-ID: 2693552
Stoye, Jens. 2014. “Suffix Tree Construction”. In Encyclopedia of Algorithms, ed. M.-Y. Kao. Springer Verlag.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2693409
Fredrich, Eugenie, Ander, Christina, Stoye, Jens, Brune, Iris, and Tauch, Andreas. 2014. “Metatranskriptomik der Mikrobiota aus der menschlichen Achselhöhle”. BIOspektrum 20 (5): 294-296.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2643941
Hoffmann, Nils, Wilhelm, Mathias, Doebbe, Anja, Niehaus, Karsten, and Stoye, Jens. 2014. “BiPACE 2D – Graph-based multiple alignment for comprehensive two-dimensional gas chromatography–mass spectrometry”. Bioinformatics 30 (7): 988-995.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2691732
Klippel, Barbara, Sahm, Kerstin, Basner, Alexander, Wiebusch, Sigrid, John, Patrick, Lorenz, Ute, Peters, Anke, et al. 2014. “Carbohydrate-active enzymes identified by metagenomic analysis of deep-sea sediment bacteria”. Extremophiles 18 (5): 853-863.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2691279
Binder, Vera, Bartenhagen, Christoph, Okpanyi, Vera, Gombert, Michael, Moehlendick, Birte, Behrens, Bianca, Klein, Hans-Ulrich, et al. 2014. “A New Workflow for Whole-Genome Sequencing of Single Human Cells”. Human mutation.
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2014 | Bielefelder E-Dissertation | PUB-ID: 2673418 OA
Mascher, Martin. 2014. POPSEQ Anchoring and ordering contig assemblies from next generation sequencing data by population sequencing. Bielefeld: Universität Bielefeld.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2665333
Henrich, Birgit, Rumming, Madis, Sczyrba, Alexander, Velleuer, Eunike, Dietrich, Ralf, Gerlach, Wolfgang, Gombert, Michael, et al. 2014. “Mycoplasma salivarium as a Dominant Coloniser of Fanconi Anaemia Associated Oral Carcinoma”. PLoS ONE 9 (3): e92297.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529309
Bolzan de Campos, Samanta, Youn, Jung-Won, Farina, Roberto, Jaenicke, Sebastian, Jünemann, Sebastian, Szczepanowski, Rafael, Beneduzi, Anelise, et al. 2013. “Changes in Root Bacterial Communities Associated to Two Different Development Stages of Canola (Brassica napus L. var oleifera) Evaluated through Next-Generation Sequencing”. Microbial Ecology 65 (3): 593-601.
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2013 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2611641
Dias Vieira Braga, Marília, and Stoye, Jens. 2013. “Restricted DCJ-Indel Model Revisited”. In Advances in Bioinformatics and Computational Biology. BSB 2013, ed. João C. Setubal and Nalvo F. Almeida, 8213:36-46. Lecture Notes in Bioinformatics. Cham: Springer Verlag.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2611630 OA
Willing, Eyla, Zaccaria, Simone, Dias Vieira Braga, Marília, and Stoye, Jens. 2013. “On the Inversion-Indel Distance”. BMC Bioinformatics 14 (Suppl 15: Proc. of RECOMB-CG 2013): S3.
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2013 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2611648
Dias Vieira Braga, Marília, Chauve, Cedric, Dörr, Daniel, Jahn, Katharina, Stoye, Jens, Thévenin, Annelyse, and Wittler, Roland. 2013. “The Potential of Family-Free Genome Comparison”. In Models and Algorithms for Genome Evolution, ed. Cedric Chauve, Nadia El-Mabrouk, and Eric Tannier, 19:287-307. Computational Biology Series. Springer Verlag.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2575011
Ander, Christina, Schulz-Trieglaff, Ole B., Stoye, Jens, and Cox, Anthony J. 2013. “metaBEETL: high-throughput analysis of heterogeneous microbial populations from shotgun DNA sequences”. BMC Bioinformatics 14 (Suppl 5: Proc. of RECOMB-Seq 2013): S2.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2555342
He, Pengfei, Hao, Kun, Blom, Jochen, Rückert, Christian, Vater, Joachim, Mao, Zichao, Wu, Yixin, et al. 2013. “Genome sequence of the plant growth promoting strain Bacillus amyloliquefaciens subsp. plantarum B9601-Y2 and expression of mersacidin and other secondary metabolites”. Journal of biotechnology 164 (2): 281-291.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2641228
Jünemann, Sebastian, Sedlazeck, Fritz Joachim, Prior, Karola, Albersmeier, Andreas, John, Uwe, Kalinowski, Jörn, Mellmann, Alexander, et al. 2013. “Corrigendum: Updating benchtop sequencing performance comparison”. Nature biotechnology 31 (12): 1148.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2492825
Reuther, Susanne, Schmetzer, Helga, Schuster, Friedhelm R., Krell, Pina, Grabrucker, Christine, Liepert, Anja, Kroell, Tanja, Kolb, Hans-Jochem, Borkhardt, Arndt, and Buhmann, Raymund. 2013. “In vitro-induced response patterns of antileukemic T cells: characterization by spectratyping and immunophenotyping”. Clinical and Experimental Medicine 13 (1): 29-48.
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2013 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2611643
Bergeron, Anne, and Stoye, Jens. 2013. “The Genesis of the DCJ Formula”. In Models and Algorithms for Genome Evolution, ed. Cedric Chauve, Nadia El-Mabrouk, and Eric Tannier, 19:63-81. Computational Biology Series. Springer Verlag.
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2013 | Bielefelder E-Dissertation | PUB-ID: 2604883 OA
Blom, Jochen. 2013. Comparative genomics on gene and single nucleotide level. Bielefeld: Universitätsbibliothek.
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2013 | Bielefelder E-Dissertation | PUB-ID: 2594322 OA
Janowski, Sebastian Jan. 2013. VANESA - A bioinformatics software application for the modeling, visualization, analysis, and simulation of biological networks in systems biology applications. Bielefeld: Bielefeld University.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2575361
Krell, Pina, Reuther, Susanne, Fischer, Ute, Keller, Thomas, Weber, Stephan, Gombert, Michael, Schuster, Friedhelm R., et al. 2013. “Next-generation-sequencing-spectratyping reveals public T-cell receptor repertoires in pediatric very severe aplastic anemia and identifies a beta chain CDR3 sequence associated with hepatitis-induced pathogenesis”. Haematologica 98 (9): 1388-1396.
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2013 | Lexikoneintrag | Veröffentlicht | PUB-ID: 2577323
Gerlach, Wolfgang, and Stoye, Jens. 2013. “Taxonomic classification of metagenomic shotgun sequences with CARMA3”. In Encyclopedia of Metagenomics, ed. Karen E. Nelson. Springer Verlag.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2625914
Bergmann, Thorsten, Maeder, U., Fiebich, M., Dickob, M., Nattkemper, Tim Wilhelm, and Anselmetti, Dario. 2013. “Categorization of two-photon microscopy images of human cartilage into states of osteoarthritis”. Osteoarthritis And Cartilage 21 (8): 1074-1082.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2566922
Jünemann, Sebastian, Sedlazeck, Fritz Joachim, Prior, Karola, Albersmeier, Andreas, John, Uwe, Kalinowski, Jörn, Mellmann, Alexander, et al. 2013. “Updating benchtop sequencing performance comparison”. Nature Biotechnology 31 (4): 294-296.
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2013 | Konferenzband | Veröffentlicht | PUB-ID: 2616537
Darling, Aaron, and Stoye, Jens, eds. 2013. “Algorithms in Bioinformatics”, Lecture Notes in Bioinformatics, 8126.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2611633 OA
Jahn, Katharina, Winter, Sascha, Stoye, Jens, and Böcker, Sebastian. 2013. “Statistics for approximate gene clusters”. BMC Bioinformatics 14 (Suppl 15: Proc. of RECOMB-CG 2013): S14.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548236
Schwientek, Patrick, Wendler, Sergej, Neshat, Armin, Eirich, Christina, Rückert, Christian, Klein, Andreas, Wehmeier, Udo F, Kalinowski, Jörn, Stoye, Jens, and Pühler, Alfred. 2013. “Comparative RNA-sequencing of the acarbose producer Actinoplanes sp. SE50/110 cultivated in different growth media”. Journal of Biotechnology 167 (2): 166-177.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548286
Luque-Almagro, Víctor M, Acera, Felipe, Igeño, Ma Isabel, Wibberg, Daniel, Roldán, Ma Dolores, Sáez, Lara P, Hennig, Magdalena, et al. 2013. “Draft whole genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344”. Environmental Microbiology 15 (1): 253-270.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2552092 OA
Wittler, Roland. 2013. “Unraveling overlapping deletions by agglomerative clustering”. BMC Genomics 14 (Suppl 1): S12.
PUB | Dateien verfügbar | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2659331
Feijão, Pedro, and Meidanis, Joao. 2013. “Extending the Algebraic Formalism for Genome Rearrangements to Include Linear Chromosomes”. IEEE/ACM Transactions on Computational Biology and Bioinformatics 10 (4): 819-831.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529202
Zakrzewski, Martha, Bekel, Thomas, Ander, Christina, Pühler, Alfred, Rupp, Oliver, Stoye, Jens, Schlüter, Andreas, and Goesmann, Alexander. 2013. “MetaSAMS - A novel software platform for taxonomic classification, functional annotation and comparative analysis of metagenome datasets”. Journal of Biotechnology 167 (2): 156-165.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2560353 OA
Dörr, Daniel, Gronau, Ilan, Moran, Shlomo, and Yavneh, Irad. 2012. “Stochastic errors vs. modeling errors in distance based phylogenetic reconstructions”. Algorithms for Molecular Biology 7 (1): 22.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2512642 OA
Dörr, Daniel, Thévenin, Annelyse, and Stoye, Jens. 2012. “Gene family assignment-free comparative genomics”. BMC Bioinformatics 13 (Suppl 19: Proc. of RECOMB-CG 2012): S3.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2498160 OA
Schröder, Jasmin, Maus, Irena, Meyer, Katja, Wördemann, Stephanie, Blom, Jochen, Jaenicke, Sebastian, Schneider, Jessica, Trost, Eva, and Tauch, Andreas. 2012. “Complete genome sequence, lifestyle, and multi-drug resistance of the human pathogen Corynebacterium resistens DSM 45100 isolated from blood samples of a leukemia patient”. BMC Genomics 13 (1): 141.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2517239 OA
Hoffmann, Nils, Keck, Matthias, Neuweger, Heiko, Wilhelm, Mathias, Högy, Petra, Niehaus, Karsten, and Stoye, Jens. 2012. “Combining peak- and chromatogram-based retention time alignment algorithms for multiple chromatography-mass spectrometry datasets”. BMC Bioinformatics 13 (1): 21.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2512644 OA
Jahn, Katharina, Sudek, Henner, and Stoye, Jens. 2012. “Multiple genome comparison based on overlap regions of pairwise local alignments”. BMC Bioinformatics 13 (Suppl. 19: Proc. of RECOMB-CG 2012): S7.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2513347
Trost, Eva, Blom, Jochen, de Castro Soares, Siomar, Huang, I-Hsiu, Al-Dilaimi, Arwa, Schröder, Jasmin, Jaenicke, Sebastian, et al. 2012. “Pangenomic Study of Corynebacterium diphtheriae That Provides Insights into the Genomic Diversity of Pathogenic Isolates from Cases of Classical Diphtheria, Endocarditis, and Pneumonia”. Journal of bacteriology 194 (12): 3199-3215.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2490949
Zschuttig, Anke, Zimmermann, Kurt, Blom, Jochen, Goesmann, Alexander, Pohlmann, Christoph, and Gunzer, Florian. 2012. “Identification and Characterization of Microcin S, a New Antibacterial Peptide Produced by Probiotic Escherichia coli G3/10”. PLoS ONE 7 (3): e33351.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2709879
Doerr, D, Hu, K, Renly, S, Edlund, S, and Davis, M. 2012. “Accelerating investigation of food-borne disease outbreaks using pro-active geospatial modeling of food supply chains”. HealthGIS '12: Proceedings of the First ACM SIGSPATIAL International Workshop on Use of GIS in Public Health, 44-47.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2527519
Ruijter, Jan M, Pfaffl, Michael W, Zhao, Sheng, Spiess, Andrej N, Boggy, Gregory, Blom, Jochen, Rutledge, Robert G, et al. 2012. “Evaluation of qPCR curve analysis methods for reliable biomarker discovery: Bias, resolution, precision, and implications”. Methods. A companion to methods in enzymology (San Diego, Calif.) 59 (1): 32-46.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2553484
Marschall, T., Herms, Inke, Kaltenbach, Hans-Michael, and Rahmann, Sven. 2012. “Probabilistic Arithmetic Automata and Their Applications”. Ieee/Acm Transactions On Computational Biology And Bioinformatics 9 (6): 1737-1750.
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2012 | Bielefelder E-Dissertation | PUB-ID: 2468026 OA
Gerlach, Wolfgang. 2012. Taxonomic classification of metagenomic sequences. Bielefeld: Universität.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2553300
Manuch, Jan, Patterson, Murray, Wittler, Roland, Chauve, Cedric, and Tannier, Eric. 2012. “Linearization of ancestral multichromosomal genomes”. BMC Bioinformatics 13 (Proc. of RECOMB-CG 2012).
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2659289
Canavez, F. C., Luche, D. D., Stothard, P., Leite, K. R. M., Sousa-Canavez, J. M., Plastow, G., Meidanis, J., et al. 2012. “Genome Sequence and Assembly of Bos indicus”. Journal of Heredity 103 (3): 342-348.
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2012 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2659385
Mira, Cleber, Feijão, Pedro, Souza, Maria Angelica, Moura, Arnaldo, Meidanis, Joao, Lima, Gabriel, Schmitz, Rafael, Bossolan, Renato P., and Freitas, Italo T. 2012. “A GRASP-based Heuristic for the Project Portfolio Selection Problem”. In 2012 IEEE 15th International Conference on Computational Science and Engineering, 36-41.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2553455
De Maayer, Pieter, Chan, Wai-Yin, Blom, Jochen, Venter, Stephanus N., Duffy, Brion, Smits, Theo H. M., and Coutinho, Teresa A. 2012. “The large universal Pantoea plasmid LPP-1 plays a major role in biological and ecological diversification”. Bmc Genomics 13 (1): 625.
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