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421 Publikationen

2003 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2017545 OA
Nattkemper, T. W., Hermann, T., Schubert, W., and Ritter, H. (2003). “Look & Listen: Sonification and Visualization of Multiparameter Micrographs” in Engineering in Medicine and Biology Society. Proceedings of the 25th Annual International Conference of the IEEE, vol. 2, (Cancun, Mexico: IEEE), 1311-1314.
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2002 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 1918951
Stoye, J. (2002). “Index Structures for Large Sequence Data: Suffix Trees and Affix Trees” in Lecture Notes in Informatics, Schubert, S., Reusch, B., and Jesse, N. eds., vol. P-20, 67-67.
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2002 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919000
Cieliebak, M., Lipták, Z., Welzl, E., Erlebach, T., and Stoye, J. (2002). “Algorithmic Complexity of Protein Identification: Searching in Weighted Strings” in Proc. of IFIP TCS 2002 143-156.
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2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773578 OA
Spang, R., Rehmsmeier, M., and Stoye, J. (2002). A novel approach to remote homology detection: jumping alignments. Journal of Computational Biology 9, 747-760.
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2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773332 OA
Stoye, J., and Gusfield, D. (2002). Simple and flexible detection of contiguous repeats using a suffix tree. Theoretical Computer Science 270, 843-856.
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2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773329 OA
Bergeron, A., Heber, S., and Stoye, J. (2002). Common intervals and sorting by reversals: a marriage of necessity. Bioinformatics 18, S54-S63.
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2002 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1918995
Heber, S., Stoye, J., Frohme, M., Hoheisel, J., and Vingron, M. (2002). “Resampling Methods in Physical Mapping” in Proc. of GfKl 2000 437-444.
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2001 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1918992
Heber, S., and Stoye, J. (2001). “Finding all Common Intervals of k Permutations” in Proc. of CPM 2001 LNCS, vol. 2089, 207-218.
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2001 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1880197
Heber, S., and Stoye, J. (2001). “Algorithms for Finding Gene Clusters” in Proc. of WABI 2001 LNCS, vol. 2149, (Berlin: Sppringer), 252-263.
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2001 | Report | PUB-ID: 1970479
Cieliebak, M., Erlebach, T., Lipták, Z., Stoye, J., and Welzl, E. (2001). Algorithmic Complexity of Protein Identification: Combinatorics of Weighted Strings. Technical Report, ETH Zürich, Dept. of Computer Science.
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2000 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1918981
Heber, S., Stoye, J., Hoheisel, J., and Vingron, M. (2000). “Contig Selection in Physical Mapping” in Proc. of RECOMB 2000 155-164.
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2000 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 1918817
Brodal, G. S., Lyngsø, R. B., Pedersen, C. N. S., and Stoye, J. (2000). “Finding Maximal Pairs with Bounded Gap” in Matching Patterns (Journal of Discrete Algorithms), Crochemore, M., and Gąsieniec, L. eds. 77-104.
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2000 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773345 OA
Krause, A., Stoye, J., and Vingron, M. (2000). The SYSTERS protein sequence cluster set. Nucleic Acids Research 28, 270-272.
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2000 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773572 OA
Heber, S., Stoye, J., Frohme, M., Hoheisel, J., and Vingron, M. (2000). Contig selection in physical mapping. Journal of Computational Biology 7, 395-408.
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2000 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1918985
Spang, R., Rehmsmeier, M., and Stoye, J. (2000). “Sequence Database Search Using Jumping Alignments” in Proc. of ISMB 2000 367-375.
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2000 | Konferenzband | Veröffentlicht | PUB-ID: 1918813
Bornberg-Bauer, E., Rost, U., Stoye, J., and Vingron, M. eds. (2000). Proceedings of the German Conference on Bioinformatics, GCB 2000. Berlin: Logos Verlag.
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1999 | Report | PUB-ID: 1970509
Brodal, G. S., Lyngsø, R. B., Pedersen, C. N. S., and Stoye, J. (1999). Finding Maximal Pairs with Bounded Gap. Report, BRICS, Department of Computer Science, University of Aarhus.
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1999 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1918971
Brodal, G. S., Lyngsø, R. B., Pedersen, C. N. S., and Stoye, J. (1999). “Finding Maximal Pairs with Bounded Gap” in Proc. of CPM 1999 LNCS, vol. 1645, 134-149.
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1998 | Report | PUB-ID: 1970515
Stoye, J., and Gusfield, D. (1998). Simple and Flexible Detection of Contiguous Repeats Using a Suffix Tree. Report, Department of Computer Science, University of California, Davis.
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1998 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1918964
Stoye, J., and Gusfield, D. (1998). “Simple and Flexible Detection of Contiguous Repeats Using a Suffix Tree (Preliminary Version)” in Proc. of CPM 1998 LNCS, vol. 1448, 140-152.
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1998 | Report | PUB-ID: 1970513
Gusfield, D., and Stoye, J. (1998). Linear Time Algorithms for Finding and Representing all the Tandem Repeats in a String. Report, Department of Computer Science, University of California, Davis.
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