Please note that PUB no longer supports Internet Explorer versions 8 or 9 (or earlier).

We recommend upgrading to the latest Internet Explorer, Google Chrome, or Firefox.

412 Publikationen

2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900943
Langenkämper, Daniel, Jakobi, Tobias, Feld, Dustin, Jelonek, Lukas, Goesmann, Alexander, and Nattkemper, Tim Wilhelm. “Comparison of Acceleration Techniques for Selected Low-Level Bioinformatics Operations”. Frontiers in Genetics 7 (2016): 5.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900421
Krause, Lutz, Nones, Katia, Loffler, Kelly A., Nancarrow, Derek, Oey, Harald, Tang, Yup Hang, Wayte, Nicola J., Patch, Ann Marie, Patel, Kalpana, Brosda, Sandra, Manning, Suzanne, Lampe, Guy, Clouston, Andrew, Thomas, Janine, Stoye, Jens, Hussey, Damian J., Watson, David I., Lord, Reginald V., Phillips, Wayne A., Gotley, David, Smithers, B. Mark, Whiteman, David C., Hayward, Nicholas K., Grimmond, Sean M., Waddell, Nicola, and Barbour, Andrew P. “Identification of the CIMP-like subtype and aberrant methylation of members of the chromosomal segregation and spindle assembly pathways in esophageal adenocarcinoma”. Carcinogenesis 37.4 (2016): 356-365.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2900111
Kowada, Luis Antonio B., Doerr, Daniel, Dantas, Simone, and Stoye, Jens. “New Genome Similarity Measures based on Conserved Gene Adjacencies”. Research in Computational Molecular Biology. RECOMB 2016. Ed. Mona Singh. Springer, 2016.Vol. 9649. Lecture Notes in Bioinformatics (LNBI). 204-224.
PUB | DOI
 
2016 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2901740
Luhmann, Nina, Thévenin, Annelyse, Ouangraoua, Aida, Wittler, Roland, and Chauve, Cedric. “The SCJ small parsimony problem for weighted gene adjacencies”. Proceedings 12th International Symposium, ISBRA 2016. Springer International Publishing, 2016.Vol. 9683. Lecture Notes in Computer Science. 200-210.
PUB | DOI | Download (ext.) | arXiv
 
2016 | Konferenzband | Veröffentlicht | PUB-ID: 2912258
Steffen Hölldobler, ed. “Genfamilienfreier Genomvergleich”. LNI D-16 (2016): 91-100.
PUB | Download (ext.)
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911748
Krahn, Thomas, Wibberg, Daniel, Maus, Irena, Winkler, Anika, Pühler, Alfred, Poirel, Laurent, and Schlüter, Andreas. “Complete Genome Sequence ofAcinetobacter baumanniiCIP 70.10, a Susceptible Reference Strain for Comparative Genome Analyses”. Genome Announcements 3.4 (2015): e00850-15.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2677844
Dias Vieira Braga, Marília, and Stoye, Jens. “Sorting linear genomes with rearrangements and indels”. IEEE/ACM Transactions on Computational Biology and Bioinformatics 12.3 (2015): 500-506.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2726366
Viduani Martinez, Fábio Henrique, Feijão, Pedro, Dias Vieira Braga, Marília, and Stoye, Jens. “On the family-free DCJ distance and similarity”. Algorithms for Molecular Biology 10 (2015): 13.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2715682
Henning, Peter, Kuich, Julius Lloyd, Hoffmann, Nils, and Stefan, Kempa. “Maui-VIA: a user-friendly software for visual identification, alignment, correction, and quantification of gas chromatography–mass spectrometry data”. Frontiers in Bioengineering and Biotechnology 2.84 (2015).
PUB | DOI | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2766708
Chen, Cai, Bartenhagen, Christoph, Gombert, Michael, Okpanyi, Vera, Binder, Vera, Röttgers, Silja, Bradtke, Jutta, Teigler-Schlegel, Andrea, Harbott, Jochen, Ginzel, Sebastian, Thiele, Ralf, Husemann, Peter, Krell, Pina, Borkhardt, Arndt, Dugas, Martin, Hu, Jianda, and Fischer, Ute. “Next-generation-sequencing of recurrent childhood high hyperdiploid acute lymphoblastic leukemia reveals mutations typically associated with high risk patients”. Leukemia research (2015).
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764612
Wittler, Roland, Marschall, Tobias, Schönhuth, Alexander, and Makinen, Veli. “Repeat- and error-aware comparison of deletions”. Bioinformatics 31.18 (2015): 2947-2954.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2015 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2757497
Holley, Guillaume, Wittler, Roland, and Stoye, Jens. “Bloom Filter Trie - a data structure for pan-genome storage”. Proceedings of WABI 2015. 2015.Vol. 9289. LNBI. 217-230.
PUB
 
2015 | Bielefelder E-Dissertation | PUB-ID: 2786037
Hilker, Rolf. Development of a read mapping analysis software and computational pan genome analysis of 20 Pseudomonas aeruginosa strains. Bielefeld: Bielefeld University, 2015.
PUB | Dateien verfügbar
 
2015 | Konferenzband | Veröffentlicht | PUB-ID: 2780229
Joao Meidanis and Jens Stoye, eds. “Proceedings of the 13th Annual Research in Computational Molecular Biology (RECOMB) Satellite Workshop on Comparative Genomics: Bioinformatics”. BMC Bioinformatics 16.Supplement 14 (2015).
PUB | Download (ext.)
 
2015 | Konferenzband | Veröffentlicht | PUB-ID: 2780232
Joao Meidanis and Jens Stoye, eds. “Proceedings of the 13th Annual Research in Computational Molecular Biology (RECOMB) Satellite Workshop on Comparative Genomics: Genomics”. BMC Genomics 16.Supplement 10 (2015).
PUB | Download (ext.)
 
2014 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2684241
Viduani Martinez, Fábio Henrique, Feijão, Pedro, Dias Vieira Braga, Marília, and Stoye, Jens. “On the family-free DCJ distance”. Algorithms in Bioinformatics. WABI 2014. Ed. Dan Brown and Burkhard Morgenstern. Berlin ; Heidelberg: Springer Verlag, 2014.Vol. 8701. Lecture Notes in Bioinformatics. 174-186.
PUB | DOI
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2687033
Dörr, Daniel, Stoye, Jens, Böcker, Sebastian, and Jahn, Katharina. “Identifying Gene Clusters by Discovering Common Intervals in Indeterminate Strings”. BMC Genomics 15.Suppl. 6: Proc. of RECOMB-CG 2014 (2014): S2.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2685362
Lechner, Marcus, Hernandez-Rosales, Maribel, Dörr, Daniel, Wieseke, Nicolas, Thévenin, Annelyse, Stoye, Jens, Hartmann, Roland K., Prohaska, Sonja J., and Stadler, Peter F. “Orthology Detection Combining Clustering and Synteny for Very Large Datasets”. PLoS ONE 9.8 (2014): e105015.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2689773
Jünemann, Sebastian, Prior, Karola, Albersmeier, Andreas, Albaum, Stefan, Kalinowski, Jörn, Goesmann, Alexander, Stoye, Jens, and Harmsen, Dag. “GABenchToB: A Genome Assembly Benchmark Tuned on Bacteria and Benchtop Sequencers”. PLOS ONE 9.9 (2014): e107014.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Bielefelder E-Dissertation | PUB-ID: 2723541
Ander, Christina. Bioinformatic methods for the analysis and comparison of metagenomes and metatranscriptomes. Bielefeld: Universitätsbibliothek Bielefeld, 2014.
PUB | PDF
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2674387
Hilker, Rolf, Stadermann, Kai Bernd, Doppmeier, Daniel, Kalinowski, Jörn, Stoye, Jens, Straube, Jasmin, Winnebald, Jörn, and Goesmann, Alexander. “ReadXplorer - Visualization and Analysis of Mapped Sequences”. Bioinformatics 30.16 (2014): 2247-2254.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2665038
Schwientek, Patrick, Neshat, Armin, Kalinowski, Jörn, Klein, Andreas, Rückert, Christian, Schneiker-Bekel, Susanne, Wendler, Sergej, Stoye, Jens, and Pühler, Alfred. “Improving the genome annotation of the acarbose producer Actinoplanes sp. SE50/110 by sequencing enriched 5'-ends of primary transcripts”. Journal of Biotechnology 190 (2014): 85-95.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2690122
Luhmann, Nina, Chauve, Cedric, Stoye, Jens, and Wittler, Roland. “Scaffolding of Ancient Contigs and Ancestral Reconstruction in a Phylogenetic Framework”. Proc. of BSB 2014. Ed. Campos Sérgio. Springer Verlag, 2014.Vol. 8826. LNBI. 135-143.
PUB | DOI
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2685988
Jakobi, Tobias, Brinkrolf, Karina, Tauch, Andreas, Noll, Thomas, Stoye, Jens, Pühler, Alfred, and Goesmann, Alexander. “Discovery of transcription start sites in the Chinese hamster genome by next-generation RNA sequencing”. Journal of Biotechnology 190 (2014): 64-75.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Bielefelder E-Dissertation | PUB-ID: 2677466
Hoffmann, Nils. Computational methods for high-throughput metabolomics. Bielefeld: Universität Bielefeld, 2014.
PUB | PDF
 
2014 | Lexikoneintrag | Veröffentlicht | PUB-ID: 2693552
Stoye, Jens. “Suffix Tree Construction”. Encyclopedia of Algorithms. Ed. M.-Y. Kao. Springer Verlag, 2014.
PUB | DOI
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2691246
Fueller, Elisa, Schaefer, Daniel, Fischer, Ute, Krell, Pina, Stanulla, Martin, Borkhardt, Arndt, and Slany, Robert K. “Genomic Inverse PCR for Exploration of Ligated Breakpoints (GIPFEL), a New Method to Detect Translocations in Leukemia”. PloS one 9.8 (2014): 104419.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2643941
Hoffmann, Nils, Wilhelm, Mathias, Doebbe, Anja, Niehaus, Karsten, and Stoye, Jens. “BiPACE 2D – Graph-based multiple alignment for comprehensive two-dimensional gas chromatography–mass spectrometry”. Bioinformatics 30.7 (2014): 988-995.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2693409
Fredrich, Eugenie, Ander, Christina, Stoye, Jens, Brune, Iris, and Tauch, Andreas. “Metatranskriptomik der Mikrobiota aus der menschlichen Achselhöhle”. BIOspektrum 20.5 (2014): 294-296.
PUB | DOI
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2691732
Klippel, Barbara, Sahm, Kerstin, Basner, Alexander, Wiebusch, Sigrid, John, Patrick, Lorenz, Ute, Peters, Anke, Abe, Fumiyoshi, Takahashi, Kyoma, Kaiser, Olaf, Goesmann, Alexander, Jaenicke, Sebastian, Grote, Ralf, Horikoshi, Koki, and Antranikian, Garabed. “Carbohydrate-active enzymes identified by metagenomic analysis of deep-sea sediment bacteria”. Extremophiles 18.5 (2014): 853-863.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2691279
Binder, Vera, Bartenhagen, Christoph, Okpanyi, Vera, Gombert, Michael, Moehlendick, Birte, Behrens, Bianca, Klein, Hans-Ulrich, Rieder, Harald, Krell, Pina, Dugas, Martin, Stoecklein, Nikolas Hendrik, and Borkhardt, Arndt. “A New Workflow for Whole-Genome Sequencing of Single Human Cells”. Human mutation (2014).
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Bielefelder E-Dissertation | PUB-ID: 2673418
Mascher, Martin. POPSEQ Anchoring and ordering contig assemblies from next generation sequencing data by population sequencing. Bielefeld: Universität Bielefeld, 2014.
PUB | PDF
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2665333
Henrich, Birgit, Rumming, Madis, Sczyrba, Alexander, Velleuer, Eunike, Dietrich, Ralf, Gerlach, Wolfgang, Gombert, Michael, Rahn, Sebastian, Stoye, Jens, Borkhardt, Arndt, and Fischer, Ute. “Mycoplasma salivarium as a Dominant Coloniser of Fanconi Anaemia Associated Oral Carcinoma”. PLoS ONE 9.3 (2014): e92297.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2611641
Dias Vieira Braga, Marília, and Stoye, Jens. “Restricted DCJ-Indel Model Revisited”. Advances in Bioinformatics and Computational Biology. BSB 2013. Ed. João C. Setubal and Nalvo F. Almeida. Cham: Springer Verlag, 2013.Vol. 8213. Lecture Notes in Bioinformatics. 36-46.
PUB | DOI
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2611630
Willing, Eyla, Zaccaria, Simone, Dias Vieira Braga, Marília, and Stoye, Jens. “On the Inversion-Indel Distance”. BMC Bioinformatics 14.Suppl 15: Proc. of RECOMB-CG 2013 (2013): S3.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2013 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2611648
Dias Vieira Braga, Marília, Chauve, Cedric, Dörr, Daniel, Jahn, Katharina, Stoye, Jens, Thévenin, Annelyse, and Wittler, Roland. “The Potential of Family-Free Genome Comparison”. Models and Algorithms for Genome Evolution. Ed. Cedric Chauve, Nadia El-Mabrouk, and Eric Tannier. Springer Verlag, 2013.Vol. 19. Computational Biology Series. 287-307.
PUB | DOI
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2575011
Ander, Christina, Schulz-Trieglaff, Ole B., Stoye, Jens, and Cox, Anthony J. “metaBEETL: high-throughput analysis of heterogeneous microbial populations from shotgun DNA sequences”. BMC Bioinformatics 14.Suppl 5: Proc. of RECOMB-Seq 2013 (2013): S2.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2555342
He, Pengfei, Hao, Kun, Blom, Jochen, Rückert, Christian, Vater, Joachim, Mao, Zichao, Wu, Yixin, Hou, Mingsheng, He, Pengbo, He, Yueqiu, and Borriss, Rainer. “Genome sequence of the plant growth promoting strain Bacillus amyloliquefaciens subsp. plantarum B9601-Y2 and expression of mersacidin and other secondary metabolites”. Journal of biotechnology 164.2 (2013): 281-291.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2641228
Jünemann, Sebastian, Sedlazeck, Fritz Joachim, Prior, Karola, Albersmeier, Andreas, John, Uwe, Kalinowski, Jörn, Mellmann, Alexander, Goesmann, Alexander, von Haeseler, Arndt, Stoye, Jens, and Harmsen, Dag. “Corrigendum: Updating benchtop sequencing performance comparison”. Nature biotechnology 31.12 (2013): 1148.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2492825
Reuther, Susanne, Schmetzer, Helga, Schuster, Friedhelm R., Krell, Pina, Grabrucker, Christine, Liepert, Anja, Kroell, Tanja, Kolb, Hans-Jochem, Borkhardt, Arndt, and Buhmann, Raymund. “In vitro-induced response patterns of antileukemic T cells: characterization by spectratyping and immunophenotyping”. Clinical and Experimental Medicine 13.1 (2013): 29-48.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2611643
Bergeron, Anne, and Stoye, Jens. “The Genesis of the DCJ Formula”. Models and Algorithms for Genome Evolution. Ed. Cedric Chauve, Nadia El-Mabrouk, and Eric Tannier. Springer Verlag, 2013.Vol. 19. Computational Biology Series. 63-81.
PUB | DOI
 
2013 | Bielefelder E-Dissertation | PUB-ID: 2604883
Blom, Jochen. Comparative genomics on gene and single nucleotide level. Bielefeld: Universitätsbibliothek, 2013.
PUB | PDF
 
2013 | Bielefelder E-Dissertation | PUB-ID: 2594322
Janowski, Sebastian Jan. VANESA - A bioinformatics software application for the modeling, visualization, analysis, and simulation of biological networks in systems biology applications. Bielefeld: Bielefeld University, 2013.
PUB | PDF
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2575361
Krell, Pina, Reuther, Susanne, Fischer, Ute, Keller, Thomas, Weber, Stephan, Gombert, Michael, Schuster, Friedhelm R., Asang, Corinna, Stepensky, Polina, Strahm, Birgit, Meisel, Roland, Stoye, Jens, and Borkhardt, Arndt. “Next-generation-sequencing-spectratyping reveals public T-cell receptor repertoires in pediatric very severe aplastic anemia and identifies a beta chain CDR3 sequence associated with hepatitis-induced pathogenesis”. Haematologica 98.9 (2013): 1388-1396.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Lexikoneintrag | Veröffentlicht | PUB-ID: 2577323
Gerlach, Wolfgang, and Stoye, Jens. “Taxonomic classification of metagenomic shotgun sequences with CARMA3”. Encyclopedia of Metagenomics. Ed. Karen E. Nelson. Springer Verlag, 2013.
PUB | DOI
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2566922
Jünemann, Sebastian, Sedlazeck, Fritz Joachim, Prior, Karola, Albersmeier, Andreas, John, Uwe, Kalinowski, Jörn, Mellmann, Alexander, Goesmann, Alexander, von Haeseler, Arndt, Stoye, Jens, and Harmsen, Dag. “Updating benchtop sequencing performance comparison”. Nature Biotechnology 31.4 (2013): 294-296.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2625914
Bergmann, Thorsten, Maeder, U., Fiebich, M., Dickob, M., Nattkemper, Tim Wilhelm, and Anselmetti, Dario. “Categorization of two-photon microscopy images of human cartilage into states of osteoarthritis”. Osteoarthritis And Cartilage 21.8 (2013): 1074-1082.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Konferenzband | Veröffentlicht | PUB-ID: 2616537
Aaron Darling and Jens Stoye, eds. “Algorithms in Bioinformatics”. Lecture Notes in Bioinformatics 8126 (2013).
PUB | DOI
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2611633
Jahn, Katharina, Winter, Sascha, Stoye, Jens, and Böcker, Sebastian. “Statistics for approximate gene clusters”. BMC Bioinformatics 14.Suppl 15: Proc. of RECOMB-CG 2013 (2013): S14.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548236
Schwientek, Patrick, Wendler, Sergej, Neshat, Armin, Eirich, Christina, Rückert, Christian, Klein, Andreas, Wehmeier, Udo F, Kalinowski, Jörn, Stoye, Jens, and Pühler, Alfred. “Comparative RNA-sequencing of the acarbose producer Actinoplanes sp. SE50/110 cultivated in different growth media”. Journal of Biotechnology 167.2 (2013): 166-177.
PUB | DOI | WoS | PubMed | Europe PMC
 

Filter und Suchbegriffe

department=66100

Suche

Publikationen filtern

Darstellung / Sortierung

Zitationsstil: mla

Export / Einbettung