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412 Publikationen

2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900943
D. Langenkämper, et al., “Comparison of Acceleration Techniques for Selected Low-Level Bioinformatics Operations”, Frontiers in Genetics, vol. 7, 2016, : 5.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900421
L. Krause, et al., “Identification of the CIMP-like subtype and aberrant methylation of members of the chromosomal segregation and spindle assembly pathways in esophageal adenocarcinoma”, Carcinogenesis, vol. 37, 2016, pp. 356-365.
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2016 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2900111
L.A.B. Kowada, et al., “New Genome Similarity Measures based on Conserved Gene Adjacencies”, Research in Computational Molecular Biology. RECOMB 2016, M. Singh, ed., Lecture Notes in Bioinformatics (LNBI), vol. 9649, Springer, 2016, pp.204-224.
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2016 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2901740
N. Luhmann, et al., “The SCJ small parsimony problem for weighted gene adjacencies”, Proceedings 12th International Symposium, ISBRA 2016, Lecture Notes in Computer Science, vol. 9683, Springer International Publishing, 2016, pp.200-210.
PUB | DOI | Download (ext.) | arXiv
 
2016 | Konferenzband | Veröffentlicht | PUB-ID: 2912258
S. Hölldobler, ed., “Genfamilienfreier Genomvergleich”, LNI, vol. D-16, 2016, pp. 91-100.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911748
T. Krahn, et al., “Complete Genome Sequence ofAcinetobacter baumanniiCIP 70.10, a Susceptible Reference Strain for Comparative Genome Analyses”, Genome Announcements, vol. 3, 2015, pp. e00850-15.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2677844
M. Dias Vieira Braga and J. Stoye, “Sorting linear genomes with rearrangements and indels”, IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol. 12, 2015, pp. 500-506.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2726366
F.H. Viduani Martinez, et al., “On the family-free DCJ distance and similarity”, Algorithms for Molecular Biology, vol. 10, 2015, : 13.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2715682
P. Henning, et al., “Maui-VIA: a user-friendly software for visual identification, alignment, correction, and quantification of gas chromatography–mass spectrometry data”, Frontiers in Bioengineering and Biotechnology, vol. 2, 2015.
PUB | DOI | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2766708
C. Chen, et al., “Next-generation-sequencing of recurrent childhood high hyperdiploid acute lymphoblastic leukemia reveals mutations typically associated with high risk patients”, Leukemia research, 2015.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764612
R. Wittler, et al., “Repeat- and error-aware comparison of deletions”, Bioinformatics, vol. 31, 2015, pp. 2947-2954.
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2015 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2757497
G. Holley, R. Wittler, and J. Stoye, “Bloom Filter Trie - a data structure for pan-genome storage”, Proceedings of WABI 2015, LNBI, vol. 9289, 2015, pp.217-230.
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2015 | Bielefelder E-Dissertation | PUB-ID: 2786037
R. Hilker, Development of a read mapping analysis software and computational pan genome analysis of 20 Pseudomonas aeruginosa strains, Bielefeld: Bielefeld University, 2015.
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2015 | Konferenzband | Veröffentlicht | PUB-ID: 2780229
J. Meidanis and J. Stoye, eds., “Proceedings of the 13th Annual Research in Computational Molecular Biology (RECOMB) Satellite Workshop on Comparative Genomics: Bioinformatics”, BMC Bioinformatics, vol. 16, 2015.
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2015 | Konferenzband | Veröffentlicht | PUB-ID: 2780232
J. Meidanis and J. Stoye, eds., “Proceedings of the 13th Annual Research in Computational Molecular Biology (RECOMB) Satellite Workshop on Comparative Genomics: Genomics”, BMC Genomics, vol. 16, 2015.
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2014 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2684241
F.H. Viduani Martinez, et al., “On the family-free DCJ distance”, Algorithms in Bioinformatics. WABI 2014, D. Brown and B. Morgenstern, eds., Lecture Notes in Bioinformatics, vol. 8701, Berlin ; Heidelberg: Springer Verlag, 2014, pp.174-186.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2687033
D. Dörr, et al., “Identifying Gene Clusters by Discovering Common Intervals in Indeterminate Strings”, BMC Genomics, vol. 15, 2014, pp. S2.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2685362
M. Lechner, et al., “Orthology Detection Combining Clustering and Synteny for Very Large Datasets”, PLoS ONE, vol. 9, 2014, pp. e105015.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2689773
S. Jünemann, et al., “GABenchToB: A Genome Assembly Benchmark Tuned on Bacteria and Benchtop Sequencers”, PLOS ONE, vol. 9, 2014, pp. e107014.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Bielefelder E-Dissertation | PUB-ID: 2723541
C. Ander, Bioinformatic methods for the analysis and comparison of metagenomes and metatranscriptomes, Bielefeld: Universitätsbibliothek Bielefeld, 2014.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2674387
R. Hilker, et al., “ReadXplorer - Visualization and Analysis of Mapped Sequences”, Bioinformatics, vol. 30, 2014, pp. 2247-2254.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2665038
P. Schwientek, et al., “Improving the genome annotation of the acarbose producer Actinoplanes sp. SE50/110 by sequencing enriched 5'-ends of primary transcripts”, Journal of Biotechnology, vol. 190, 2014, pp. 85-95.
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2014 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2690122
N. Luhmann, et al., “Scaffolding of Ancient Contigs and Ancestral Reconstruction in a Phylogenetic Framework”, Proc. of BSB 2014, C. Sérgio, ed., LNBI, vol. 8826, Springer Verlag, 2014, pp.135-143.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2685988
T. Jakobi, et al., “Discovery of transcription start sites in the Chinese hamster genome by next-generation RNA sequencing”, Journal of Biotechnology, vol. 190, 2014, pp. 64-75.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Bielefelder E-Dissertation | PUB-ID: 2677466
N. Hoffmann, Computational methods for high-throughput metabolomics, Bielefeld: Universität Bielefeld, 2014.
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2014 | Lexikoneintrag | Veröffentlicht | PUB-ID: 2693552
J. Stoye, “Suffix Tree Construction”, Encyclopedia of Algorithms, M.-Y. Kao, ed., Springer Verlag, 2014.
PUB | DOI
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2691246
E. Fueller, et al., “Genomic Inverse PCR for Exploration of Ligated Breakpoints (GIPFEL), a New Method to Detect Translocations in Leukemia”, PloS one, vol. 9, 2014, pp. 104419.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2643941
N. Hoffmann, et al., “BiPACE 2D – Graph-based multiple alignment for comprehensive two-dimensional gas chromatography–mass spectrometry”, Bioinformatics, vol. 30, 2014, pp. 988-995.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2693409
E. Fredrich, et al., “Metatranskriptomik der Mikrobiota aus der menschlichen Achselhöhle”, BIOspektrum, vol. 20, 2014, pp. 294-296.
PUB | DOI
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2691732
B. Klippel, et al., “Carbohydrate-active enzymes identified by metagenomic analysis of deep-sea sediment bacteria”, Extremophiles, vol. 18, 2014, pp. 853-863.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2691279
V. Binder, et al., “A New Workflow for Whole-Genome Sequencing of Single Human Cells”, Human mutation, 2014.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Bielefelder E-Dissertation | PUB-ID: 2673418
M. Mascher, POPSEQ Anchoring and ordering contig assemblies from next generation sequencing data by population sequencing, Bielefeld: Universität Bielefeld, 2014.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2665333
B. Henrich, et al., “Mycoplasma salivarium as a Dominant Coloniser of Fanconi Anaemia Associated Oral Carcinoma”, PLoS ONE, vol. 9, 2014, pp. e92297.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2611641
M. Dias Vieira Braga and J. Stoye, “Restricted DCJ-Indel Model Revisited”, Advances in Bioinformatics and Computational Biology. BSB 2013, J.C. Setubal and N.F. Almeida, eds., Lecture Notes in Bioinformatics, vol. 8213, Cham: Springer Verlag, 2013, pp.36-46.
PUB | DOI
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2611630
E. Willing, et al., “On the Inversion-Indel Distance”, BMC Bioinformatics, vol. 14, 2013, : S3.
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2013 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2611648
M. Dias Vieira Braga, et al., “The Potential of Family-Free Genome Comparison”, Models and Algorithms for Genome Evolution, C. Chauve, N. El-Mabrouk, and E. Tannier, eds., Computational Biology Series, vol. 19, Springer Verlag, 2013, pp.287-307.
PUB | DOI
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2575011
C. Ander, et al., “metaBEETL: high-throughput analysis of heterogeneous microbial populations from shotgun DNA sequences”, BMC Bioinformatics, vol. 14, 2013, pp. S2.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2555342
P. He, et al., “Genome sequence of the plant growth promoting strain Bacillus amyloliquefaciens subsp. plantarum B9601-Y2 and expression of mersacidin and other secondary metabolites”, Journal of biotechnology, vol. 164, 2013, pp. 281-291.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2641228
S. Jünemann, et al., “Corrigendum: Updating benchtop sequencing performance comparison”, Nature biotechnology, vol. 31, 2013, pp. 1148.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2492825
S. Reuther, et al., “In vitro-induced response patterns of antileukemic T cells: characterization by spectratyping and immunophenotyping”, Clinical and Experimental Medicine, vol. 13, 2013, pp. 29-48.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2611643
A. Bergeron and J. Stoye, “The Genesis of the DCJ Formula”, Models and Algorithms for Genome Evolution, C. Chauve, N. El-Mabrouk, and E. Tannier, eds., Computational Biology Series, vol. 19, Springer Verlag, 2013, pp.63-81.
PUB | DOI
 
2013 | Bielefelder E-Dissertation | PUB-ID: 2604883
J. Blom, Comparative genomics on gene and single nucleotide level, Bielefeld: Universitätsbibliothek, 2013.
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2013 | Bielefelder E-Dissertation | PUB-ID: 2594322
S.J. Janowski, VANESA - A bioinformatics software application for the modeling, visualization, analysis, and simulation of biological networks in systems biology applications, Bielefeld: Bielefeld University, 2013.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2575361
P. Krell, et al., “Next-generation-sequencing-spectratyping reveals public T-cell receptor repertoires in pediatric very severe aplastic anemia and identifies a beta chain CDR3 sequence associated with hepatitis-induced pathogenesis”, Haematologica, vol. 98, 2013, pp. 1388-1396.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Lexikoneintrag | Veröffentlicht | PUB-ID: 2577323
W. Gerlach and J. Stoye, “Taxonomic classification of metagenomic shotgun sequences with CARMA3”, Encyclopedia of Metagenomics, K.E. Nelson, ed., Springer Verlag, 2013.
PUB | DOI
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2566922
S. Jünemann, et al., “Updating benchtop sequencing performance comparison”, Nature Biotechnology, vol. 31, 2013, pp. 294-296.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2625914
T. Bergmann, et al., “Categorization of two-photon microscopy images of human cartilage into states of osteoarthritis”, Osteoarthritis And Cartilage, vol. 21, 2013, pp. 1074-1082.
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2013 | Konferenzband | Veröffentlicht | PUB-ID: 2616537
A. Darling and J. Stoye, eds., “Algorithms in Bioinformatics”, Lecture Notes in Bioinformatics, vol. 8126, 2013.
PUB | DOI
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2611633
K. Jahn, et al., “Statistics for approximate gene clusters”, BMC Bioinformatics, vol. 14, 2013, pp. S14.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548236
P. Schwientek, et al., “Comparative RNA-sequencing of the acarbose producer Actinoplanes sp. SE50/110 cultivated in different growth media”, Journal of Biotechnology, vol. 167, 2013, pp. 166-177.
PUB | DOI | WoS | PubMed | Europe PMC
 

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