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414 Publikationen

2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2499125
Baake, E., & Herms, I. (2007). Single-Crossover Dynamics: Finite versus Infinite Populations. Bull. Math. Biol., 70(2), 603-624. doi:10.1007/s11538-007-9270-5
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2499132
Baumbach, J. (2007). CoryneRegNet 4.0 – A reference database for corynebacterial gene regulatory networks. BMC Bioinformatics, 8(1), 429. doi:10.1186/1471-2105-8-429
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2007 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2499168
Carvalho Jr. de, S. A., & Rahmann, S. (2007). Improving the design of GeneChip arrays by combining placement and embedding. Computational Systems Bioformatics Conference, 417-427.
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2007 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2499442
Höner zu Siederdissen, C., Ragg, S., & Rahmann, S. (2007). Discovering biomarkers for myocardial infarction from SELDI-TOF spectra. Advances in Data Analysis. Proceedings of the 30th Annual Conference of the Gesellschaft für Klassifikation e.V., Studies in Classification, Data Analysis, and Knowledge Organization, 569-576. Springer. doi:10.1007/978-3-540-70981-7_65
PUB | DOI
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1631047
Meisinger-Henschel, C., Schmidt, M., Lukassen, S., Linke, B., Krause, L., Konietzny, S., Goesmann, A., et al. (2007). Genomic sequence of chorioallantois vaccinia virus Ankara, the ancestor of modified vaccinia virus Ankara. JOURNAL OF GENERAL VIROLOGY, 88(12), 3249-3259. doi:10.1099/vir.0.83156-0
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1918432
Didier, G., Schmidt, T., Stoye, J., & Tsur, D. (2007). Character Sets of Strings. Journal of Discrete Algorithms, 5(2), 330-340. doi:10.1016/j.jda.2006.03.021
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783712 OA
Kaltenbach, H. - M., Wilke, A., & Böcker, S. (2007). SAMPI: protein identification with mass spectra alignments. BMC Bioinformatics, 8(1), 102. doi:10.1186/1471-2105-8-102
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783754 OA
Neuweger, H., Baumbach, J., Albaum, S., Bekel, T., Dondrup, M., Hüser, A. T., Kalinowski, J., et al. (2007). CoryneCenter: an online resource for the integrated analysis of corynebacterial genome and transcriptome data. BMC Systems Biology, 1(1), 55. doi:10.1186/1752-0509-1-55
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1631327
Schneiker-Bekel, S., Perlova, O., Kaiser, O., Gerth, K., Alici, A., Altmeyer, M. O., Bartels, D., et al. (2007). Complete genome sequence of the myxobacterium Sorangium cellulosum. Nature Biotechnology, 25(11), 1281-1289. doi:10.1038/nbt1354
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2007 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1902192
Välimäki, N., Gerlach, W., Dixit, K., & Mäkinen, V. (2007). Engineering a Compressed Suffix Tree Implementation. Proceedings of 6th Workshop on Experimental Algorithms (WEA'07), 217-228. Springer-Verlag.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1594917
Välimäki, N., Gerlach, W., Dixit, K., & Mäkinen, V. (2007). Compressed suffix tree - a basis for genome-scale sequence analysis. BIOINFORMATICS, 23(5), 629-630. doi:10.1093/bioinformatics/btl681
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2007 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1594020
Baumbach, J., Wittkop, T., Rademacher, K., Rahmann, S., Brinkrolf, K., & Tauch, A. (2007). CoryneRegNet 3.0 - An interactive systems biology platform for the analysis of gene regulatory networks in corynebacteria and Escherichia coli. JOURNAL OF BIOTECHNOLOGY, 129(2), 279-289. doi:10.1016/j.jbiotec.2006.12.012
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2007 | Bielefelder E-Dissertation | PUB-ID: 2303359 OA
Schürmann, K. - B. (2007). Suffix arrays in theory and practice. Bielefeld (Germany): Bielefeld University.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1595253
Schürmann, K. - B., & Stoye, J. (2007). An incomplex algorithm for fast suffix array construction. SOFTWARE-PRACTICE & EXPERIENCE, 37(3), 309-329. doi:10.1002/spe.768
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1630749
Lessmann, B., Nattkemper, T. W., Hans, V. H., & Degenhard, A. (2007). A method for linking computed image features to histological semantics in neuropathology. Journal of Biomedical Informatics, 40(6), 631-641. doi:10.1016/j.jbi.2007.06.007
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783345 OA
Krause, L., McHardy, A. C., Nattkemper, T. W., Pühler, A., Stoye, J., & Meyer, F. (2007). GISMO - gene identification using a support vector machine for ORF classification. Nucleic Acids Research, 35(2), 540-549. doi:10.1093/nar/gkl1083
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2007 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2018416
Nattkemper, T. W., Degenhard, A., & Twellmann, T. (2007). Breas. In M. A. Hayat (Ed.), Cancer Imaging - Lung and breast carcinomas (Vol. 1, pp. 309-324). Academic Press.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1630781
Mellmann, A., Weniger, T., Berssenbrügge, C., Rothgänger, J., Sammeth, M., Stoye, J., & Harmsen, D. (2007). Based Upon Repeat Pattern (BURP): an algorithm to characterize the long-term evolution of Staphylococcus aureus populations based on spa polymorphisms. BMC MICROBIOLOGY, 7(1), 98. doi:10.1186/1471-2180-7-98
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2006 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2499677
Cicalese, F., & Laber, E. (2006). On the Competitive Ratio of Evaluating Priced Functions. Proc. 17th Annual ACM-SIAM Symposium on Discrete Algorithms (SODA 2006), 944-953.
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2006 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1596815
Rahmann, S., & Klau, G. W. (2006). Integer linear programs for discovering approximate gene clusters. In P. Bücher & B. M. E. Moret (Eds.), Lecture Notes in Computer Science: Vol. 4175. Algorithms in Bioinformatics. WABI 2006 (pp. 298-309). Berlin: Springer. doi:10.1007/11851561_28
PUB | DOI | WoS
 
2006 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2374232
Varini, C., Lessmann, B., Degenhard, A., Hans, V. H., & Nattkemper, T. W. (2006). Visual Exploration of Pathology Images by a Discrete Wavelet Transform Preprocessed Locally Linear Embedding. In H. Handels, J. Ehrhardt, A. Horsch, H. - P. Meinzer, & T. Tolxdorff (Eds.), Bildverarbeitung für die Medizin (pp. 66-70). Springer.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2499511
Böcker, S. (2006). Sequencing from Compomers: The Puzzle. Theor. Comput. Syst., 39(3), 455-471. doi:10.1007/s00224-005-1238-y
PUB | DOI | WoS
 
2006 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2499624
Cicalese, F., & Deppe, C. (2006). Q-ary Ulam-Rényi game with constrained lies. In R. Ahlswede, L. Bäumer, N. Cai, H. Aydinian, V. Blinovsky, C. Deppe, & H. Masurian (Eds.), Lecture notes in computer science: Vol. 4123. General Theory of Information Transfer and Combinatorics (pp. 663-679). Springer. doi:10.1007/11889342_42
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2659363
Feijão, P., Neiva, L. S., Azeredo-Espin, A. M. L. d., & Lessinger, A. C. (2006). AMiGA: the arthropodan mitochondrial genomes accessible database. Bioinformatics, 22(7), 902-903. doi:10.1093/bioinformatics/btl021
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2006 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2374254
Lessmann, B., Nattkemper, T. W., Huth, J., Loyek, C., Kessar, P., Khazen, M., Pointon, L., et al. (2006). Content Based Image Retrieval for Dynamic Time Series Data. Proceedings of BVM, 61-65
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2006 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2374494
Timm, W., Böcker, S., Twellmann, T., & Nattkemper, T. W. (2006). Peak intensity prediction for pmf mass spectra using support vector regression. Proc. of the 7th International FLINS Conference on Applied Artificial Intelligence, 565-572. doi:10.1142/9789812774118_0080
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2499499
Baumbach, J., Brinkrolf, K., Wittkop, T., Tauch, A., & Rahmann, S. (2006). CoryneRegNet 2: An integrative bioinformatics approach for reconstruction and comparison of transcriptional regulatory networks in prokaryotes. Journal of Integrative Bioinformatics, 3(2), 24. doi:10.2390/biecoll-jib-2006-24
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1902179
Gerlach, W., & Giegerich, R. (2006). GUUGle: a utility for fast exact matching under RNA complementary rules including G-U base pairing. Bioinformatics, 22(6), 762-764. doi:10.1093/bioinformatics/btk041
PUB | DOI | WoS | PubMed | Europe PMC
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2499664
Cicalese, F., Gargano, L., & Vaccaro, U. (2006). A Note on Approximation of Uniform Distributions from Variable-to-Fixed Length Codes. IEEE Transactions on Information Theory, 52(8), 3772-3777. doi:10.1109/tit.2006.878151
PUB | DOI | WoS
 
2006 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2499515
Böcker, S., Pervukhin, A., Lipták, Z., & Letzel, M. (2006). Decomposing metabolomic isotope patterns. Proc. WABI, 4175, 12-23. doi:10.1007/11851561_2
PUB | DOI
 
2006 | Bielefelder E-Dissertation | PUB-ID: 2305885 OA
Taher, L. (2006). Computational methods for splice site prediction. Bielefeld (Germany): Bielefeld University.
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2006 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2499562
Carvalho Jr. de, S. A., & Rahmann, S. (2006). Improving the layout of oligonucleotide microarrays: Pivot Partitioning. Proc. 6th Workshop of Algorithms in Bioinformatics, 4175, 321-332. doi:10.1007/11851561_30
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1599943
Sammeth, M., Griebel, T., Tille, F., & Stoye, J. (2006). Panta rhei (QAlign2): an open graphical environment for sequence analysis. BIOINFORMATICS, 22(7), 889-890. doi:10.1093/bioinformatics/btl007
PUB | DOI | WoS | PubMed | Europe PMC
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1599570
Rasmussen, K. R., Stoye, J., & Myers, E. W. (2006). Efficient q-gram filters for finding all epsilon-matches over a given length. JOURNAL OF COMPUTATIONAL BIOLOGY, 13(2), 296-308. doi:10.1089/cmb.2006.13.296
PUB | DOI | WoS | PubMed | Europe PMC
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1599574
Bergeron, A., Mixtacki, J., & Stoye, J. (2006). On sorting by translocations. JOURNAL OF COMPUTATIONAL BIOLOGY, 13(2), 567-578. doi:10.1089/cmb.2006.13.567
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2006 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1596811
Bergeron, A., Mixtacki, J., & Stoye, J. (2006). A Unifying View of Genome Rearrangements. Proc. of WABI 2006, LNBI, 4175, 163-173. SPRINGER-VERLAG BERLIN. doi:10.1007/11851561_16
PUB | DOI | WoS
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1597213
Sammeth, M., & Stoye, J. (2006). Comparing tandem repeats with duplications and excisions of variable degree. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 3(4), 395-407. doi:10.1109/TCBB.2006.46
PUB | DOI | WoS | PubMed | Europe PMC
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1597313
Bergeron, A., & Stoye, J. (2006). On the similarity of sets of permutations and its applications to genome comparison. JOURNAL OF COMPUTATIONAL BIOLOGY, 13(7), 1340-1354. doi:10.1089/cmb.2006.13.1340
PUB | DOI | WoS | PubMed | Europe PMC
 
2006 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 1918946
Stoye, J. (2006). Index Structures in Biological Sequence Analysis: From Simplicity to Complexity and Back. Presented at the JOBIM 2006, Bordeaux, France
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2006 | Report | PUB-ID: 1970464 OA
Chauve, C., Diekmann, Y., Heber, S., Mixtacki, J., Rahmann, S., & Stoye, J. (2006). On Common Intervals with Errors (Forschungsberichte). Bielefeld: Technische Fakultät der Universität Bielefeld.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773632 OA
Baumbach, J., Brinkrolf, K., Czaja, L. F., Rahmann, S., & Tauch, A. (2006). CoryneRegNet: An ontology-based data warehouse of corynebacterial transcription factors and regulatory networks. BMC Genomics, 7(1), 24. doi:10.1186/1471-2164-7-24
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1631957
Krause, L., Diaz, N. N., Bartels, D., Edwards, R. A., Pühler, A., Rohwer, F., Meyer, F., et al. (2006). Finding novel genes in bacterial communities isolated from the environment. BIOINFORMATICS, 22(14), e281-e289. doi:10.1093/bioinformatics/btl247
PUB | DOI | WoS | PubMed | Europe PMC
 
2005 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2309191
Rahmann, S. (2005). Algorithmen für das Design von DNA-Microarrays. In D. Wagner (Ed.), Lecture Notes in Informatics: Vol. 5. Ausgezeichnete Informatikdissertationen 2004 (pp. 145-154). Bonn: Ges. für Informatik .
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773695 OA
Röpcke, S., Grossmann, S., Rahmann, S., & Vingron, M. (2005). T-Reg Comparator: an analysis tool for the comparison of position weight matrices. Nucleic Acids Research, 33(Web Server), W438-W441. doi:10.1093/nar/gki590
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2005 | Bielefelder E-Dissertation | PUB-ID: 2302056 OA
Lipták, Z. (2005). Strings in proteomics and transcriptomics : algorithmic and combinatorial questions in mass spectrometry and EST clustering. Bielefeld (Germany): Bielefeld University.
PUB | Datei
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1601941
Grossmann, J., Roos, F. F., Cieliebak, M., Lipták, Z., Mathis, L. K., Müller, M., Gruissem, W., et al. (2005). AUDENS: A tool for automated peptide de novo sequencing. Journal of Proteome Research, 4(5), 1768-1774. doi:10.1021/pr050070a
PUB | DOI | WoS | PubMed | Europe PMC
 
2005 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1603101
Cicalese, F., Damaschke, P., & Vaccaro, U. (2005). Optimal group testing strategies with interval queries and their application to splice site detection. In V. S. Sunderam, G. D. van Albada, P. M. A. Sloot, & J. J. Dongarra (Eds.), Lecture Notes in Computer Science: Vol. 3515. Computational Science – ICCS 2005. 5th International Conference, Atlanta, GA, USA, May 22-25, 2005. Proceedings, Part II (pp. 1029-1037). Berlin: Springer. doi:10.1007/11428848_130
PUB | DOI | WoS
 
2005 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1601085
Cicalese, F., & Laber, E. S. (2005). An optimal algorithm for querying priced information: Monotone Boolean functions and game trees. In G. Stølting Brodal & S. Leonardi (Eds.), Lecture Notes in Computer Science: Vol. 3669. Algorithms – ESA 2005. 13th Annual European Symposium, Palma de Mallorca, Spain, October 3-6, 2005. Proceedings (pp. 664-676). Berlin: Springer. doi:10.1007/11561071_59
PUB | DOI | WoS
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2308882
Cicalese, F., & Deppe, C. (2005). Q-ary Ulam-Rényi game with constrained lies. Electronic Notes in Discrete Mathematics, 21, 255-261. doi:10.1016/j.endm.2005.07.038
PUB | DOI
 
2005 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2374546
Saalbach, A., Twellmann, T., Nattkemper, T. W., Wismüller, A., Ontrup, J., & Ritter, H. (2005). A hyperbolic topographic mapping for proximity data. Proc. of the IASTED International Conference of Artificial Intelligence and Applications, 2005, 106-111.
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