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424 Publikationen

2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635321 OA
EMMA 2-A MAGE-compliant system for the collaborative analysis and integration of microarray data
Dondrup, Michael, EMMA 2-A MAGE-compliant system for the collaborative analysis and integration of microarray data. BMC Bioinformatics 10 (1). , 2009
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1591507
A Unified Approach for Reconstructing Ancient Gene Clusters
Stoye, Jens, A Unified Approach for Reconstructing Ancient Gene Clusters. IEEE/ACM Transactions on Computational Biology and Bioinformatics 6 (3). , 2009
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589531
Qupe-a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments
Albaum, Stefan, Qupe-a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments. Bioinformatics 25 (23). , 2009
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1590204
A report on the 2009 SIG on short read sequencing and algorithms (Short-SIG)
Brudno, Michael, A report on the 2009 SIG on short read sequencing and algorithms (Short-SIG). BIOINFORMATICS 25 (21). , 2009
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589098 OA
WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads
Gerlach, Wolfgang, WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads. BMC Bioinformatics 10 (1). , 2009
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588783
Use of machine-learning algorithms for the automated detection of cold-water coral habitats: a pilot study
Purser, Autun, Use of machine-learning algorithms for the automated detection of cold-water coral habitats: a pilot study. Marine Ecology Progress Series 397 (). , 2009
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1898105
Computation of Median Gene Clusters
Böcker, Sebastian, Computation of Median Gene Clusters. Journal of Computational Biology 16 (8). , 2009
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1591319
ChromA: signal-based retention time alignment for chromatography-mass spectrometry data
Hoffmann, Nils, ChromA: signal-based retention time alignment for chromatography-mass spectrometry data. Bioinformatics 25 (16). , 2009
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588760 OA
An asymmetric approach to preserve common intervals while sorting by reversals
Dias Vieira Braga, Marília, An asymmetric approach to preserve common intervals while sorting by reversals. Algorithms for Molecular Biology 4 (1). , 2009
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2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919209
Rearrangement Models and Single-Cut Operations
Medvedev, Paul, Rearrangement Models and Single-Cut Operations. Comparative Genomics : International Workshop, RECOMB-CG 2009, Budapest, Hungary, September 27-29, 2009. Proceedings 5817 (). Berlin, Heidelberg, 2009
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2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018440
BIIGLE Tools - A Web 2.0 Approach for Visual Bioimage Database Mining
Schoening, Timm, BIIGLE Tools - A Web 2.0 Approach for Visual Bioimage Database Mining. IV 09 - Intl. Conference on Information Visualization (). , 2009
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2009 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 1918945
Computational Short Read Metagenomics
Stoye, Jens, Computational Short Read Metagenomics. (). , 2009
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634447
The Sequence Analysis and Management System - SAMS-2.0: Data management and sequence analysis adapted to changing requirements from traditional sanger sequencing to ultrafast sequencing technologies
Bekel, Thomas, The Sequence Analysis and Management System - SAMS-2.0: Data management and sequence analysis adapted to changing requirements from traditional sanger sequencing to ultrafast sequencing technologies. Journal of Biotechnology 140 (1-2). , 2009
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634615
Massive parallel bisulfite sequencing of CG-rich DNA fragments reveals that methylation of many X-chromosomal CpG islands in female blood DNA is incomplete
Zeschnigk, Michael, Massive parallel bisulfite sequencing of CG-rich DNA fragments reveals that methylation of many X-chromosomal CpG islands in female blood DNA is incomplete. HUMAN MOLECULAR GENETICS 18 (8). , 2009
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2427252
The Maximum Independent Set Problem in Planar Graphs
Alekseev, Vladimir E., The Maximum Independent Set Problem in Planar Graphs. Proc. MFCS 2008 5162 (). Berlin, Heidelberg, 2008
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2008 | Bielefelder E-Dissertation | PUB-ID: 2306324 OA
CoryneRegNet : a reference database and analysis platform for corynebacterial gene regulatory networks
Baumbach, Jan, CoryneRegNet : a reference database and analysis platform for corynebacterial gene regulatory networks. (). Bielefeld (Germany), 2008
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2008 | Bielefelder E-Dissertation | PUB-ID: 2302950 OA
The double cut and join operation and its applications to genome rearrangements
Zakotnik, Julia, The double cut and join operation and its applications to genome rearrangements. (). Bielefeld (Germany), 2008
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2659345
Structure and evolution of the mitochondrial genomes of Haematobia irritans and Stomoxys calcitrans: The Muscidae (Diptera: Calyptratae) perspective
Oliveira, Marcos Túlio, Structure and evolution of the mitochondrial genomes of Haematobia irritans and Stomoxys calcitrans: The Muscidae (Diptera: Calyptratae) perspective. Molecular Phylogenetics and Evolution 48 (3). , 2008
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2308903
Function Evaluation Via Linear Programming in the Priced Information Model
Cicalese, F., Function Evaluation Via Linear Programming in the Priced Information Model. Proc. ICALP 2008 5125 (). Berlin, Heidelberg, 2008
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2008 | Report | Veröffentlicht | PUB-ID: 2308927 OA
On Parsimony Haplotyping
Cicalese, Ferdinando, On Parsimony Haplotyping. (). Bielefeld, 2008
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2308974
Structural Identifiability in Low-Rank Matrix Factorization
Fritzilas, Epameinondas, Structural Identifiability in Low-Rank Matrix Factorization. Computing and Combinatorics 14th Annual International Conference, COCOON 2008 Dalian, China, June 27-29, 2008 Proceedings (). Berlin u.a., 2008
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2008 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2499103
The Complexity of the Exact Weighted Independent Set Problem
Milanivc, M., The Complexity of the Exact Weighted Independent Set Problem. Combinatorial optimization and theoretical computer science: interfaces and perspectives : 30th anniversary of the LAMSADE (). London, UK, 2008
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2499108
Genome Halving under DCJ Revisited
Mixtacki, Julia, Genome Halving under DCJ Revisited. Computing and Combinatorics. 14th Annual International Conference, COCOON 2008 Dalian, China, June 27-29, 2008 Proceedings (). , 2008
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919198
Detecting Repeat Families in Incompletely Sequenced Genomes
Quitzau, José Augusto Amgarten, Detecting Repeat Families in Incompletely Sequenced Genomes. Proc. of WABI 2008 5251 (). , 2008
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2008 | Report | Veröffentlicht | PUB-ID: 2499065
Computing with Priced Information: game trees and the value dependent cost model
Cicalese, F., Computing with Priced Information: game trees and the value dependent cost model. (). , 2008
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2499072
Computing Alignment Seed Sensitivity with Probabilistic Arithmetic Automata
Herms, Inke, Computing Alignment Seed Sensitivity with Probabilistic Arithmetic Automata. Algorithms in Bioinformatics: 8th International Workshop, WABI 2008, Karlsruhe, Germany, September 15-19, 2008. Proceedings (). Berlin u.a., 2008
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2498846
The relative worst order ratio applied to seat reservation
Boyar, Joan, The relative worst order ratio applied to seat reservation. ACM Transactions on Algorithms 4 (4). , 2008
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2008 | Report | Veröffentlicht | PUB-ID: 2308930 OA
Computing with Priced Information: game trees and the value dependent cost model
Cicalese, Ferdinando, Computing with Priced Information: game trees and the value dependent cost model. (). Bielefeld, 2008
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2499098
A polynomial algorithm to find an independent set of maximum weight in a fork-free graph
Lozin, V. V., A polynomial algorithm to find an independent set of maximum weight in a fork-free graph. J. Discr. Alg. 6 (4). , 2008
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2008 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2499120
Integer Linear Programming Techniques for Discovering Approximate Gene Clusters
Rahmann, Sven, Integer Linear Programming Techniques for Discovering Approximate Gene Clusters. Bioinformatics Algorithms: Techniques and Applications (). Hoboken, NJ, USA, 2008
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2008 | Report | PUB-ID: 1970459 OA
A space efficient representation for sparse de Bruijn subgraphs
Quitzau, José Augusto Amgarten, A space efficient representation for sparse de Bruijn subgraphs. (). Bielefeld, 2008
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2008 | Report | PUB-ID: 1970461 OA
Online Abelian Pattern Matching
Ejaz, Tahir, Online Abelian Pattern Matching. (). Bielefeld, 2008
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1636699
MeltDB: a software platform for the analysis and integration of metabolomics experiment data
Neuweger, Heiko, MeltDB: a software platform for the analysis and integration of metabolomics experiment data. Bioinformatics 24 (23). , 2008
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2008 | Bielefelder E-Dissertation | PUB-ID: 2305571 OA
Flexible protein annotation with sequence- and secondary structure information
Bannert, Constantin, Flexible protein annotation with sequence- and secondary structure information. (). Bielefeld (Germany), 2008
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2008 | Lexikoneintrag | Veröffentlicht | PUB-ID: 1918834
Suffix Tree Construction in RAM (1997; Farach-Colton)
Stoye, Jens, Suffix Tree Construction in RAM (1997; Farach-Colton). Encyclopedia of Algorithms (). , 2008
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919192
Computation of Median Gene Clusters
Böcker, Sebastian, Computation of Median Gene Clusters. Proc. of RECOMB 2008 4955 (). , 2008
PUB | DOI
 
2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919200
On Computing the Breakpoint Reuse Rate in Rearrangement Scenarios
Bergeron, Anne, On Computing the Breakpoint Reuse Rate in Rearrangement Scenarios. Proc. of Recomb-CG 2008 5267 (). , 2008
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018405
Detection of Focal Cortical Dysplasia in MRI Using Textural Features
Loyek, Christian, Detection of Focal Cortical Dysplasia in MRI Using Textural Features. Proceedings of BVM 2008 (). Berlin, Heidelberg, 2008
PUB | DOI
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1636280 OA
Peak intensity prediction in MALDI-TOF mass spectrometry: A machine learning study to support quantitative proteomics
Timm, Wiebke, Peak intensity prediction in MALDI-TOF mass spectrometry: A machine learning study to support quantitative proteomics. BMC Bioinformatics 9 (1). , 2008
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592257
Whole-genome comparison of disease and carriage strains provides insights into virulence evolution in Neisseria meningitidis
Schoen, Christoph, Whole-genome comparison of disease and carriage strains provides insights into virulence evolution in Neisseria meningitidis. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 105 (9). , 2008
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1587304
An overview of the wcd EST clustering tool
Hazelhurst, Scott, An overview of the wcd EST clustering tool. BIOINFORMATICS 24 (13). , 2008
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592737
DECOMP - from interpreting mass spectrometry peaks to solving the money changing problem
Boecker, Sebastian, DECOMP - from interpreting mass spectrometry peaks to solving the money changing problem. BIOINFORMATICS 24 (4). , 2008
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1587078
Counting suffix arrays and strings
Schürmann, Klaus-Bernd, Counting suffix arrays and strings. THEORETICAL COMPUTER SCIENCE 395 (2-3). , 2008
PUB | DOI | WoS
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1586009
Taxonomic composition and gene content of a methane-producing microbial community isolated from a biogas reactor
Krause, Lutz, Taxonomic composition and gene content of a methane-producing microbial community isolated from a biogas reactor. JOURNAL OF BIOTECHNOLOGY 136 (1-2). , 2008
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1587052
Hyperbolic SOM-based clustering of DNA fragment features for taxonomic visualization and classification
Martin, Christian, Hyperbolic SOM-based clustering of DNA fragment features for taxonomic visualization and classification. Bioinformatics 24 (14). , 2008
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1586785 OA
Comparative Pathway Analyzer - a web server for comparative analysis, clustering and visualization of metabolic networks in multiple organisms
Oehm, Sebastian, Comparative Pathway Analyzer - a web server for comparative analysis, clustering and visualization of metabolic networks in multiple organisms. NUCLEIC ACIDS RESEARCH 36 (Web Server). , 2008
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585939
Ultrafast pyrosequencing of Corynebacterium kroppenstedtii DSM44385 revealed insights into the physiology of a lipophilic corynebacterium that lacks mycolic acids
Tauch, Andreas, Ultrafast pyrosequencing of Corynebacterium kroppenstedtii DSM44385 revealed insights into the physiology of a lipophilic corynebacterium that lacks mycolic acids. Journal of Biotechnology 136 (1-2). , 2008
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783364 OA
Phylogenetic classification of short environmental DNA fragments
Krause, Lutz, Phylogenetic classification of short environmental DNA fragments. Nucleic Acids Research 36 (7). , 2008
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919195
HP Distance via Double Cut and Join Distance
Bergeron, Anne, HP Distance via Double Cut and Join Distance. Combinatorial Pattern Matching. 19th Annual Symposium, CPM 2008, Pisa, Italy, June 18-20, 2008 Proceedings (). , 2008
PUB | DOI
 
2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018409
A Tree Index to Support Clustering Based Exploratory Data Analysis
Martin, Christian, A Tree Index to Support Clustering Based Exploratory Data Analysis. Bioinformatics Research and Development : Second International Conference, BIRD 2008 Vienna, Austria, July 7-9, 2008 Proceedings 13 (). Berlin, Heidelberg, 2008
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