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419 Publikationen

2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919211
F. Hufsky, et al., “Swiftly Computing Center Strings”, Proc. of WABI 2010, LNBI, vol. 6293, 2010, pp.325-336.
PUB | DOI | WoS | PubMed | Europe PMC
 
2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919216
J. Kovac, M. Dias Vieira Braga, and J. Stoye, “The Problem of Chromosome Reincorporation in DCJ Sorting and Halving”, Proc. of Recomb-CG 2010, LNBI, vol. 6398, 2010, pp.13-24.
PUB | DOI
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1794419
J. Herold, et al., “Integrating semantic annotation and information visualization for the analysis of multichannel fluorescence micrographs from pancreatic tissue”, Computerized Medical Imaging and Graphics, vol. 34, 2010, pp. 446-452.
PUB | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1898025
M. Dias Vieira Braga and J. Stoye, “The Solution Space of Sorting by DCJ”, Journal of Computational Biology, vol. 17, 2010, pp. 1145-1165.
PUB | DOI | WoS | PubMed | Europe PMC
 
2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919215
M. Dias Vieira Braga, E. Willing, and J. Stoye, “Genomic Distance with DCJ and Indels”, Proc. of WABI 2010, LNBI, vol. 6293, 2010, pp.90-101.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1929860
P. Schwientek, et al., “Global gene expression analysis in nonfailing and failing myocardium pre- and postpulsatile and nonpulsatile ventricular assist device support”, PHYSIOLOGICAL GENOMICS, vol. 42, 2010, pp. 397-405.
PUB | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1930110
B. Joseph, et al., “Comparative Genome Biology of a Serogroup B Carriage and Disease Strain Supports a Polygenic Nature of Meningococcal Virulence”, JOURNAL OF BACTERIOLOGY, vol. 192, 2010, pp. 5363-5377.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589663
A. Bergeron, J. Mixtacki, and J. Stoye, “A New Linear Time Algorithm to Compute the Genomic Distance via the Double Cut and Join Distance”, Theoretical Computer Science, vol. 410, 2009, pp. 5300-5316.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2427059
B. Escoffier, M. Milanič, and V.T. Paschos, “Simple and fast reoptimizations for the Steiner tree problem”, Algorithmic Operations Research, vol. 4, 2009, pp. 86-94.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2308924
F. Cicalese and M. Milanic, “Competitive evaluation of threshold functions in the priced information model”, Annals of Operations Research, vol. 188, 2009, pp. 111-132.
PUB | DOI | WoS
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2426437
A. Bunkowski, et al., “MCC/IMS signals in human breath related to sarcoidosis-results of a feasibility study using an automated peak finding procedure”, Journal of Breath Research, vol. 3, 2009, pp. 046001.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2426487
S. Böcker, et al., “SIRIUS: decomposing isotope patterns for metabolite identification”, Bioinformatics, vol. 25, 2009, pp. 218-224.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Preprint | Veröffentlicht | PUB-ID: 2426653
F. Cicalese, et al., “On the Complexity of Searching in Trees: Average-case Minimization”, 2009.
PUB | arXiv
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2426660
F. Cicalese, F. Manne, and Q. Xin, “Faster Deterministic Communication in Radio Networks”, Algorithmica, vol. 54, 2009, pp. 226-242.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2427118
J.A. Engelmann, et al., “Modeling cross-hybridization on phylogenetic DNA microarrays increases the detection power of closely related species”, Molecular Ecology Resources, vol. 9, 2009, pp. 83-93.
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2009 | Bielefelder E-Dissertation | PUB-ID: 2305073 OA
S. Oehm, Comparing organisms on the level of metabolism, Bielefeld (Germany): Bielefeld University, 2009.
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2009 | Bielefelder E-Dissertation | PUB-ID: 2301318 OA
H. Neuweger, MeltDB : a software platform for the analysis and integration of metabolomics experiment data, Bielefeld (Germany): Bielefeld University, 2009.
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2009 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2659405
P. Feijão and J. Meidanis, “SCJ: A Variant of Breakpoint Distance for Which Sorting, Genome Median and Genome Halving Problems Are Easy”, Algorithms in Bioinformatics, S.L. Salzberg and T. Warnow, eds., Lecture Notes in Computer Science, vol. 5724, 2009, pp.85-96.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2427161
M. Kamiński, V.V. Lozin, and M. Milanič, “Recent developments on graphs of bounded clique-width”, Discrete Appl. Math., vol. 157, 2009, pp. 2747-2761.
PUB | DOI | WoS
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2427173
M. Kamiński, P. Medvedev, and M. Milanič, “On the plane-width of graphs”, Electronic Notes in Discrete Mathematics, vol. 34, 2009, pp. 633-637.
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2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919206
M. Dias Vieira Braga and J. Stoye, “Counting All DCJ Sorting Scenarios”, Proc. of Recomb-CG 2009, LNBI, vol. 5817, 2009, pp.36-47.
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2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2426605
F. Cicalese, G. Fici, and Z. Lipták, “Searching for Jumbled Patterns in Strings”, Proc. of the Prague Stringology Conference 2009, 2009, pp.105-117.
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2009 | Bielefelder E-Dissertation | PUB-ID: 2303240 OA
T. Gagie, New algorithms and lower bounds for sequential-access data compression, Bielefeld (Germany): Bielefeld University, 2009.
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2009 | Bielefelder E-Dissertation | PUB-ID: 2302608 OA
I. Herms, Probabilistic arithmetic automata : applications of a stochastic computational framework in biological sequence analysis, Bielefeld (Germany): Bielefeld University, 2009.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2406118
N. Välimäki, et al., “Engineering a compressed suffix tree implementation”, Journal of Experimental Algorithmics (JEA), vol. 14, 2009, pp. 4.2-2:4.23.
PUB | DOI
 
2009 | Bielefelder E-Dissertation | PUB-ID: 2304745 OA
E. Fritzilas, Combinatorial aspects of low-rank matrix factorization and two applications in bioinformatics, Bielefeld (Germany): Bielefeld University, 2009.
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2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919207
G. Blin and J. Stoye, “Finding Nested Common Intervals Efficiently”, Proc. of Recomb-CG 2009, LNBI, vol. 5817, 2009, pp.59-69.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018390
J. Herold, et al., “A way towards analyzing high-content bioimage data by means of semantic annotation and visual data mining”, SPIE Medical Imaging, 2009.
PUB | DOI
 
2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018422
J. Ontrup, et al., “BIIGLE - Web 2.0 enabled labelling and exploring of images from the Arctic deep-sea observatory HAUSGARTEN”, OCEANS 2009 - Europe, Bremen: 2009.
PUB | DOI
 
2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018427
H. Qureshi, et al., “A Robust Adaptive Wavelet-based Method for Classification of Meningioma Histology Images”, MICCAI«2009 Workshop on Optical Tissue Image Analysis in Microscopy, Histology, and Endoscopy, 2009.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783187 OA
J. Blom, et al., “EDGAR: a software framework for the comparative analysis of prokaryotic genomes”, BMC Bioinformatics, vol. 10, 2009, : 154.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1636062
J. Ontrup, et al., “Detecting, Assessing, and Monitoring Relevant Topics in Virtual Information Environments”, IEEE Transactions on Knowledge and Data Engineering, vol. 21, 2009, pp. 415-427.
PUB | DOI | WoS
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1898137
K. Jahn and J. Stoye, “Approximative Gencluster und ihre Anwendung in der komparativen Genomik”, Informatik-Spektrum, vol. 32, 2009, pp. 288-300.
PUB | DOI
 
2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1893884
P. Husemann and J. Stoye, “Phylogenetic Comparative Assembly”, Proc. of WABI 2009, LNBI, vol. 5724, 2009, pp.145-156.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635314 OA
N.N. Diaz, et al., “TACOA - Taxonomic classification of environmental genomic fragments using a kernelized nearest neighbor approach”, BMC Bioinformatics, vol. 10, 2009, pp. 56.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635321 OA
M. Dondrup, et al., “EMMA 2-A MAGE-compliant system for the collaborative analysis and integration of microarray data”, BMC Bioinformatics, vol. 10, 2009, : 50.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1591507
J. Stoye and R. Wittler, “A Unified Approach for Reconstructing Ancient Gene Clusters”, IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol. 6, 2009, pp. 387-400.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589098 OA
W. Gerlach, et al., “WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads”, BMC Bioinformatics, vol. 10, 2009, pp. 430.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589531
S. Albaum, et al., “Qupe-a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments”, Bioinformatics, vol. 25, 2009, pp. 3128-3134.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1590204
M. Brudno, et al., “A report on the 2009 SIG on short read sequencing and algorithms (Short-SIG)”, BIOINFORMATICS, vol. 25, 2009, pp. 2863-2864.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588783
A. Purser, et al., “Use of machine-learning algorithms for the automated detection of cold-water coral habitats: a pilot study”, Marine Ecology Progress Series, vol. 397, 2009, pp. 241-251.
PUB | DOI | WoS
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1898105
S. Böcker, et al., “Computation of Median Gene Clusters”, Journal of Computational Biology, vol. 16, 2009, pp. 1085-1099.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1591319
N. Hoffmann and J. Stoye, “ChromA: signal-based retention time alignment for chromatography-mass spectrometry data”, Bioinformatics, vol. 25, 2009, pp. 2080-2081.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588760 OA
M. Dias Vieira Braga, C. Gautier, and M.-F. Sagot, “An asymmetric approach to preserve common intervals while sorting by reversals”, Algorithms for Molecular Biology, vol. 4, 2009, pp. 16.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919209
P. Medvedev and J. Stoye, “Rearrangement Models and Single-Cut Operations”, Comparative Genomics : International Workshop, RECOMB-CG 2009, Budapest, Hungary, September 27-29, 2009. Proceedings, Lecture Notes in Computer Science, vol. 5817, Berlin, Heidelberg: Springer, 2009, pp.84-97.
PUB | DOI
 
2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018440
T. Schoening, et al., “BIIGLE Tools - A Web 2.0 Approach for Visual Bioimage Database Mining”, IV 09 - Intl. Conference on Information Visualization, 2009.
PUB | DOI
 
2009 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 1918945
J. Stoye, “Computational Short Read Metagenomics”, Presented at the JOBIM 2009, Nantes, France, 2009.
PUB
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634447
T. Bekel, et al., “The Sequence Analysis and Management System - SAMS-2.0: Data management and sequence analysis adapted to changing requirements from traditional sanger sequencing to ultrafast sequencing technologies”, Journal of Biotechnology, vol. 140, 2009, pp. 3-12.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634615
M. Zeschnigk, et al., “Massive parallel bisulfite sequencing of CG-rich DNA fragments reveals that methylation of many X-chromosomal CpG islands in female blood DNA is incomplete”, HUMAN MOLECULAR GENETICS, vol. 18, 2009, pp. 1439-1448.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2427252
V.E. Alekseev, et al., “The Maximum Independent Set Problem in Planar Graphs”, Proc. MFCS 2008, 2008, pp.96-107.
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