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415 Publikationen

2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919215
M. Dias Vieira Braga, E. Willing, and J. Stoye, in Proc. of WABI 2010, 2010, p. 90-101.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1929860
P. Schwientek, P. Ellinghaus, S. Steppan, D. D'Urso, M. Seewald, A. Kassner, R. Cebulla, S. Schulte-Eistrup, M. Morshuis, D. Roefe, et al., “Global gene expression analysis in nonfailing and failing myocardium pre- and postpulsatile and nonpulsatile ventricular assist device support”, PHYSIOLOGICAL GENOMICS, 2010, 42, 397-405.
PUB | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1930110
B. Joseph, S. Schneiker-Bekel, A. Schramm-Glueck, J. Blom, H. Claus, B. Linke, R. F. Schwarz, A. Becker, A. Goesmann, M. Frosch, et al., “Comparative Genome Biology of a Serogroup B Carriage and Disease Strain Supports a Polygenic Nature of Meningococcal Virulence”, JOURNAL OF BACTERIOLOGY, 2010, 192, 5363-5377.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589663
A. Bergeron, J. Mixtacki, and J. Stoye, “A New Linear Time Algorithm to Compute the Genomic Distance via the Double Cut and Join Distance”, Theoretical Computer Science, 2009, 410, 5300-5316.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2427059
B. Escoffier, M. Milanič, and V. T. Paschos, “Simple and fast reoptimizations for the Steiner tree problem”, Algorithmic Operations Research, 2009, 4, 86-94.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2308924
F. Cicalese, and M. Milanic, “Competitive evaluation of threshold functions in the priced information model”, Annals of Operations Research, 2009, 188, 111-132.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2426437
A. Bunkowski, B. Bödeker, S. Bader, M. Westhoff, P. Litterst, and J. I. Baumbach, “MCC/IMS signals in human breath related to sarcoidosis-results of a feasibility study using an automated peak finding procedure”, Journal of Breath Research, 2009, 3, 046001.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2426487
S. Böcker, Z. Lipták, A. Pervukhin, and M. C. Letzel, “SIRIUS: decomposing isotope patterns for metabolite identification”, Bioinformatics, 2009, 25, 218-224.
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2009 | Preprint | Veröffentlicht | PUB-ID: 2426653
F. Cicalese, T. Jacobs, E. S. Laber, and M. Molinaro, “On the Complexity of Searching in Trees: Average-case Minimization”, 2009.
PUB | arXiv
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2426660
F. Cicalese, F. Manne, and Q. Xin, “Faster Deterministic Communication in Radio Networks”, Algorithmica, 2009, 54, 226-242.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2427118
J. A. Engelmann, S. Rahmann, M. Wolf, J. Schultz, E. Fritzilas, S. Kneitz, T. Dandekar, and T. Müller, “Modeling cross-hybridization on phylogenetic DNA microarrays increases the detection power of closely related species”, Molecular Ecology Resources, 2009, 9, 83-93.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Bielefelder E-Dissertation | PUB-ID: 2305073 OA
S. Oehm, Comparing organisms on the level of metabolism, Bielefeld University, Bielefeld (Germany), 2009.
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2009 | Bielefelder E-Dissertation | PUB-ID: 2301318 OA
H. Neuweger, MeltDB : a software platform for the analysis and integration of metabolomics experiment data, Bielefeld University, Bielefeld (Germany), 2009.
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2009 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2659405
P. Feijão, and J. Meidanis, in Algorithms in Bioinformatics (Eds.: S.L. Salzberg, T. Warnow), 2009, p. 85-96.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2427161
M. Kamiński, V. V. Lozin, and M. Milanič, “Recent developments on graphs of bounded clique-width”, Discrete Appl. Math., 2009, 157, 2747-2761.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2427173
M. Kamiński, P. Medvedev, and M. Milanič, “On the plane-width of graphs”, Electronic Notes in Discrete Mathematics, 2009, 34, 633-637.
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2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919206
M. Dias Vieira Braga, and J. Stoye, in Proc. of Recomb-CG 2009, 2009, p. 36-47.
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2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2426605
F. Cicalese, G. Fici, and Z. Lipták, in Proc. of the Prague Stringology Conference 2009, 2009, p. 105-117.
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2009 | Bielefelder E-Dissertation | PUB-ID: 2303240 OA
T. Gagie, New algorithms and lower bounds for sequential-access data compression, Bielefeld University, Bielefeld (Germany), 2009.
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2009 | Bielefelder E-Dissertation | PUB-ID: 2302608 OA
I. Herms, Probabilistic arithmetic automata : applications of a stochastic computational framework in biological sequence analysis, Bielefeld University, Bielefeld (Germany), 2009.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2406118
N. Välimäki, V. Mäkinen, W. Gerlach, and K. Dixit, “Engineering a compressed suffix tree implementation”, Journal of Experimental Algorithmics (JEA), 2009, 14, 4.2-2:4.23.
PUB | DOI
 
2009 | Bielefelder E-Dissertation | PUB-ID: 2304745 OA
E. Fritzilas, Combinatorial aspects of low-rank matrix factorization and two applications in bioinformatics, Bielefeld University, Bielefeld (Germany), 2009.
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2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919207
G. Blin, and J. Stoye, in Proc. of Recomb-CG 2009, 2009, p. 59-69.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018390
J. Herold, S. Abouna, L. Zhou, S. Pelengaris, D. B. A. Epstein, M. Khan, and T. W. Nattkemper, in SPIE Medical Imaging, 2009.
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2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018422
J. Ontrup, N. Ehnert, M. Bergmann, and T. W. Nattkemper, in OCEANS 2009 - Europe, Bremen, 2009.
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2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018427
H. Qureshi, N. Rajpoot, T. W. Nattkemper, and V. Hans, in MICCAI«2009 Workshop on Optical Tissue Image Analysis in Microscopy, Histology, and Endoscopy, 2009.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783187 OA
J. Blom, S. Albaum, D. Doppmeier, A. Pühler, F. - J. Vorhölter, M. Zakrzewski, and A. Goesmann, “EDGAR: a software framework for the comparative analysis of prokaryotic genomes”, BMC Bioinformatics, 2009, 10, : 154.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1636062
J. Ontrup, H. Ritter, S. Scholz, and R. Wagner, “Detecting, Assessing, and Monitoring Relevant Topics in Virtual Information Environments”, IEEE Transactions on Knowledge and Data Engineering, 2009, 21, 415-427.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1898137
K. Jahn, and J. Stoye, “Approximative Gencluster und ihre Anwendung in der komparativen Genomik”, Informatik-Spektrum, 2009, 32, 288-300.
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2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1893884
P. Husemann, and J. Stoye, in Proc. of WABI 2009, 2009, p. 145-156.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635314 OA
N. N. Diaz, L. Krause, A. Goesmann, K. Niehaus, and T. W. Nattkemper, “TACOA - Taxonomic classification of environmental genomic fragments using a kernelized nearest neighbor approach”, BMC Bioinformatics, 2009, 10, 56.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635321 OA
M. Dondrup, S. Albaum, T. Griebel, K. Henckel, S. Jünemann, T. Kahlke, C. K. Kleindt, H. Kuester, B. Linke, D. Mertens, et al., “EMMA 2-A MAGE-compliant system for the collaborative analysis and integration of microarray data”, BMC Bioinformatics, 2009, 10, : 50.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1591507
J. Stoye, and R. Wittler, “A Unified Approach for Reconstructing Ancient Gene Clusters”, IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2009, 6, 387-400.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589098 OA
W. Gerlach, S. Jünemann, F. Tille, A. Goesmann, and J. Stoye, “WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads”, BMC Bioinformatics, 2009, 10, 430.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589531
S. Albaum, H. Neuweger, B. Fraenzel, S. Lange, D. Mertens, C. Troetschel, D. Wolters, J. Kalinowski, T. W. Nattkemper, and A. Goesmann, “Qupe-a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments”, Bioinformatics, 2009, 25, 3128-3134.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1590204
M. Brudno, P. Medvedev, J. Stoye, and F. M. De La Vega, “A report on the 2009 SIG on short read sequencing and algorithms (Short-SIG)”, BIOINFORMATICS, 2009, 25, 2863-2864.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588783
A. Purser, M. Bergmann, J. Ontrup, and T. W. Nattkemper, “Use of machine-learning algorithms for the automated detection of cold-water coral habitats: a pilot study”, Marine Ecology Progress Series, 2009, 397, 241-251.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1898105
S. Böcker, K. Jahn, J. Mixtacki, and J. Stoye, “Computation of Median Gene Clusters”, Journal of Computational Biology, 2009, 16, 1085-1099.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1591319
N. Hoffmann, and J. Stoye, “ChromA: signal-based retention time alignment for chromatography-mass spectrometry data”, Bioinformatics, 2009, 25, 2080-2081.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588760 OA
M. Dias Vieira Braga, C. Gautier, and M. - F. Sagot, “An asymmetric approach to preserve common intervals while sorting by reversals”, Algorithms for Molecular Biology, 2009, 4, 16.
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2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919209
P. Medvedev, and J. Stoye, in Comparative Genomics : International Workshop, RECOMB-CG 2009, Budapest, Hungary, September 27-29, 2009. Proceedings, Springer, Berlin, Heidelberg, 2009, p. 84-97.
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2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018440
T. Schoening, N. Ehnert, J. Ontrup, and T. W. Nattkemper, in IV 09 - Intl. Conference on Information Visualization, 2009.
PUB | DOI
 
2009 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 1918945
J. Stoye, 2009, p. 3-4.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634447
T. Bekel, K. Henckel, H. Küster, F. Meyer, V. Mittard-Runte, H. Neuweger, D. Paarmann, O. Rupp, M. Zakrzewski, A. Pühler, et al., “The Sequence Analysis and Management System - SAMS-2.0: Data management and sequence analysis adapted to changing requirements from traditional sanger sequencing to ultrafast sequencing technologies”, Journal of Biotechnology, 2009, 140, 3-12.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634615
M. Zeschnigk, M. Martin, G. Betzl, A. Kalbe, C. Sirsch, K. Buiting, S. Gross, E. Fritzilas, B. Frey, S. Rahmann, et al., “Massive parallel bisulfite sequencing of CG-rich DNA fragments reveals that methylation of many X-chromosomal CpG islands in female blood DNA is incomplete”, HUMAN MOLECULAR GENETICS, 2009, 18, 1439-1448.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2427252
V. E. Alekseev, V. V. Lozin, D. Malyshev, and M. Milanič, in Proc. MFCS 2008, 2008, p. 96-107.
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2008 | Bielefelder E-Dissertation | PUB-ID: 2306324 OA
J. Baumbach, CoryneRegNet : a reference database and analysis platform for corynebacterial gene regulatory networks, Bielefeld University, Bielefeld (Germany), 2008.
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2008 | Bielefelder E-Dissertation | PUB-ID: 2302950 OA
J. Zakotnik, The double cut and join operation and its applications to genome rearrangements, Bielefeld University, Bielefeld (Germany), 2008.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2659345
M. T. Oliveira, J. G. Barau, A. C. M. Junqueira, P. Feijão, A. C. da Rosa, C. F. Abreu, A. M. L. Azeredo-Espin, and A. C. Lessinger, “Structure and evolution of the mitochondrial genomes of Haematobia irritans and Stomoxys calcitrans: The Muscidae (Diptera: Calyptratae) perspective”, Molecular Phylogenetics and Evolution, 2008, 48, 850-857.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2308903
F. Cicalese, and E. S. Laber, in Proc. ICALP 2008, 2008, p. 173-185.
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