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419 Publikationen

2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529309
S. Bolzan de Campos, et al., “Changes in Root Bacterial Communities Associated to Two Different Development Stages of Canola (*Brassica napus* L. var oleifera) Evaluated through Next-Generation Sequencing”, Microbial Ecology, vol. 65, 2013, pp. 593-601.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2659331
P. Feijão and J. Meidanis, “Extending the Algebraic Formalism for Genome Rearrangements to Include Linear Chromosomes”, IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol. 10, 2013, pp. 819-831.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529202
M. Zakrzewski, et al., “MetaSAMS - A novel software platform for taxonomic classification, functional annotation and comparative analysis of metagenome datasets”, Journal of Biotechnology, vol. 167, 2013, pp. 156-165.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2560353 OA
D. Dörr, et al., “Stochastic errors vs. modeling errors in distance based phylogenetic reconstructions”, Algorithms for Molecular Biology, vol. 7, 2012, pp. 22.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2512642 OA
D. Dörr, A. Thévenin, and J. Stoye, “Gene family assignment-free comparative genomics”, BMC Bioinformatics, vol. 13, 2012, pp. S3.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2498160 OA
J. Schröder, et al., “Complete genome sequence, lifestyle, and multi-drug resistance of the human pathogen Corynebacterium resistens DSM 45100 isolated from blood samples of a leukemia patient”, BMC Genomics, vol. 13, 2012, : 141.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2517239 OA
N. Hoffmann, et al., “Combining peak- and chromatogram-based retention time alignment algorithms for multiple chromatography-mass spectrometry datasets”, BMC Bioinformatics, vol. 13, 2012, pp. 21.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2512644 OA
K. Jahn, H. Sudek, and J. Stoye, “Multiple genome comparison based on overlap regions of pairwise local alignments”, BMC Bioinformatics, vol. 13, 2012, pp. S7.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2513347
E. Trost, et al., “Pangenomic Study of Corynebacterium diphtheriae That Provides Insights into the Genomic Diversity of Pathogenic Isolates from Cases of Classical Diphtheria, Endocarditis, and Pneumonia”, Journal of bacteriology, vol. 194, 2012, pp. 3199-3215.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2490949
A. Zschuttig, et al., “Identification and Characterization of Microcin S, a New Antibacterial Peptide Produced by Probiotic Escherichia coli G3/10”, PLoS ONE, vol. 7, 2012, pp. e33351.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2709879
D. Doerr, et al., “Accelerating investigation of food-borne disease outbreaks using pro-active geospatial modeling of food supply chains”, HealthGIS '12: Proceedings of the First ACM SIGSPATIAL International Workshop on Use of GIS in Public Health, 2012, pp. 44-47.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2527519
J.M. Ruijter, et al., “Evaluation of qPCR curve analysis methods for reliable biomarker discovery: Bias, resolution, precision, and implications”, Methods. A companion to methods in enzymology (San Diego, Calif.), vol. 59, 2012, pp. 32-46.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2553484
T. Marschall, et al., “Probabilistic Arithmetic Automata and Their Applications”, Ieee/Acm Transactions On Computational Biology And Bioinformatics, vol. 9, 2012, pp. 1737-1750.
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2012 | Bielefelder E-Dissertation | PUB-ID: 2468026 OA
W. Gerlach, Taxonomic classification of metagenomic sequences, Bielefeld: Universität, 2012.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2553300
J. Manuch, et al., “Linearization of ancestral multichromosomal genomes”, BMC Bioinformatics, vol. 13, 2012.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2659289
F.C. Canavez, et al., “Genome Sequence and Assembly of Bos indicus”, Journal of Heredity, vol. 103, 2012, pp. 342-348.
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2012 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2659385
C. Mira, et al., “A GRASP-based Heuristic for the Project Portfolio Selection Problem”, 2012 IEEE 15th International Conference on Computational Science and Engineering, 2012, pp.36-41.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2553455
P. De Maayer, et al., “The large universal Pantoea plasmid LPP-1 plays a major role in biological and ecological diversification”, Bmc Genomics, vol. 13, 2012, pp. 625.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2486060 OA
P. Schwientek, et al., “The complete genome sequence of the acarbose producer Actinoplanes sp. SE50/110”, BMC Genomics, vol. 13, 2012, : 112.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2659280
P. Biller, P. Feijão, and J. Meidanis, “Rearrangement-Based Phylogeny Using the Single-Cut-or-Join Operation.”, IEEE/ACM transactions on computational biology and bioinformatics, vol. 10, 2012, pp. 122-134.
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2012 | Konferenzband | Veröffentlicht | PUB-ID: 2510416
J. Kärkkäinen and J. Stoye, eds., “Combinatorial Pattern Matching”, Lecture Notes in Computer Science, vol. 7354, 2012.
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2012 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2468382 OA
N. Hoffmann and J. Stoye, “Generic Software Frameworks for GC-MS Based Metabolomics”, Metabolomics, U. Roessner, ed., InTech, 2012, pp.73-98.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2510984
R. Hilker, et al., “UniMoG - A unifying framework for genomic distance calculation and sorting based on DCJ”, Bioinformatics, vol. 28, 2012, pp. 2509-2511.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2542210
V.R. Parreira, et al., “Sequence of Two Plasmids from Clostridium perfringens Chicken Necrotic Enteritis Isolates and Comparison with C. perfringens Conjugative Plasmids”, PLoS ONE, vol. 7, 2012, pp. e49753.
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2012 | Bielefelder E-Dissertation | PUB-ID: 2533144 OA
M. Zakrzewski, Development of computational methods for the analysis of metagenome and metatranscriptome data, Bielefeld: Universität Bielefeld, 2012.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2493233
P. Burcsi, et al., “ALGORITHMS FOR JUMBLED PATTERN MATCHING IN STRINGS”, International Journal of Foundations of Computer Science, vol. 23, 2012, pp. 357-374.
PUB | DOI | WoS | arXiv
 
2012 | Bielefelder E-Dissertation | PUB-ID: 2484427 OA
P. Schwientek, Genomics and transcriptomics of the industrial acarbose producer Actinoplanes sp. SE50/110, Bielefeld: Universität Bielefeld, 2012.
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2012 | Bielefelder E-Dissertation | PUB-ID: 2517237 OA
A. Bunkowski, MCC-IMS data analysis using automated spectra processing and explorative visualisation methods, Bielefeld: Bielefeld University, 2012.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526281
M. Zischka, et al., “Complete Genome Sequence of the Porcine Isolate Enterococcus faecalis D32”, Journal of Bacteriology, vol. 194, 2012, pp. 5490-5491.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526298
I. Maus, et al., “Complete Genome Sequence of the Hydrogenotrophic, Methanogenic Archaeon Methanoculleus bourgensis Strain MS2T, Isolated from a Sewage Sludge Digester”, Journal of Bacteriology, vol. 194, 2012, pp. 5487-5488.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526933
A.B. Dohrmann, et al., “Importance of rare taxa for bacterial diversity in the rhizosphere of Bt- and conventional maize varieties”, The ISME journal, vol. 7, 2012, pp. 37-49.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2517230
S. Jünemann, et al., “Bacterial Community Shift in Treated Periodontitis Patients Revealed by Ion Torrent 16S rRNA Gene Amplicon Sequencing”, PLoS ONE, vol. 7, 2012, pp. e41606.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2501312
K. Gorzolka, et al., “Metabolite fingerprinting of barley whole seeds, endosperms, and embryos during industrial malting”, Journal of Biotechnology, vol. 159, 2012, pp. 177-187.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2490286
U. Vogel, et al., “Ion Torrent PGM sequencing for genomic typing of Neisseria meningitidis for rapid determination of multiple layers of typing information”, Journal of clinical microbiology, vol. 50, 2012, pp. 1889-1894.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1897974
P.L. Erdős, L. Soukup, and J. Stoye, “Balanced Vertices in Trees and a Simpler Algorithm to Compute the Genomic Distance”, Applied Mathematics Letters, vol. 24, 2011, pp. 82-86.
PUB | DOI | WoS | arXiv
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2396558 OA
M. Dias Vieira Braga, et al., “On the weight of indels in genomic distances”, BMC Bioinformatics, vol. 12, 2011, : S13.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2396509 OA
M. Dias Vieira Braga, et al., “Genomic distance under gene substitutions”, BMC Bioinformatics, vol. 12, 2011, : S8.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2091794
M. Dias Vieira Braga, E. Willing, and J. Stoye, “Double Cut and Join with Insertions and Deletions”, Journal of Computational Biology, vol. 18, 2011, pp. 1167-1184.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2091790
J. Kovac, et al., “Restricted DCJ Model. Rearrangement Problems with Chromosome Reincorporation”, Journal of Computational Biology, vol. 18, 2011, pp. 1231-1241.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2354746
P. Schwientek, et al., “Sequencing of high G + C microbial genomes using the ultrafast pyrosequencing technology”, Journal of Biotechnology, vol. 155, 2011, pp. 68-77.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2375634
J.F. Pothier, et al., “The ubiquitous plasmid pXap41 in the invasive phytopathogen Xanthomonas arboricola pv. pruni: complete sequence and comparative genomic analysis”, FEMS Microbiology Letters, vol. 323, 2011, pp. 52-60.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2404767
B. Niu, et al., “The Genome of the Plant Growth-Promoting Rhizobacterium Paenibacillus polymyxa M-1 Contains Nine Sites Dedicated to Nonribosomal Synthesis of Lipopeptides and Polyketides.”, Journal of Bacteriology, vol. 193, 2011, pp. 5862-5863.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2354731
D. Wibberg, et al., “Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid”, Journal of Biotechnology, vol. 155, 2011, pp. 50-62.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2659339
P. Feijão and J. Meidanis, “SCJ: A Breakpoint-Like Distance that Simplifies Several Rearrangement Problems”, IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol. 8, 2011, pp. 1318-1329.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326511
C. Rückert, et al., “Genome sequence of B. amyloliquefaciens type strain DSM7(T) reveals differences to plant-associated B. amyloliquefaciens FZB42”, Journal of Biotechnology, vol. 155, 2011, pp. 78-85.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2373808
J. Herold, C. Loyek, and T.W. Nattkemper, “Multivariate Image Mining”, Wiley Interdisciplinary Reviews: DATA MINING AND KNOWLEDGE DISCOVERY, vol. 1, 2011, pp. 2-13.
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2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2659373
C. Mira, et al., “The SinBiota 2.0 Biodiversity Information System”, 2011 IEEE Seventh International Conference on eScience, 2011, pp.142-149.
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2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2401639
G. Fici and Z. Lipták, “On prefix normal words”, Development in Language Theory. 15th International Conference (DLT 2011). Proceedings, G. Mauri and A. Leporati, eds., Lecture Notes in Computer Science, vol. 6795, Berlin ; Heidelberg: Springer, 2011, pp.228-238.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2401665
S. Hazelhurst and Z. Lipták, “KABOOM! A new suffix-array based algorithm for clustering expression data”, Bioinformatics, vol. 27, 2011, pp. 3348-3355.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2375954
R. Borriss, et al., “Relationship of Bacillus amyloliquefaciens clades associated with strains DSM 7T and FZB42T: a proposal for Bacillus amyloliquefaciens subsp. amyloliquefaciens subsp. nov. and Bacillus amyloliquefaciens subsp. plantarum subsp. nov. based on complete genome sequence comparisons”, Int J Syst Evol Microbiol, vol. 61, 2011, pp. 1786-1801.
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