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419 Publikationen

2002 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919000
Cieliebak, M., Lipták, Z., Welzl, E., Erlebach, T., Stoye, J.: Algorithmic Complexity of Protein Identification: Searching in Weighted Strings. Proc. of IFIP TCS 2002. p. 143-156. (2002).
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2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773578 OA
Spang, R., Rehmsmeier, M., Stoye, J.: A novel approach to remote homology detection: jumping alignments. Journal of Computational Biology. 9, 747-760 (2002).
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2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773332 OA
Stoye, J., Gusfield, D.: Simple and flexible detection of contiguous repeats using a suffix tree. Theoretical Computer Science. 270, 843-856 (2002).
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2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773329 OA
Bergeron, A., Heber, S., Stoye, J.: Common intervals and sorting by reversals: a marriage of necessity. Bioinformatics. 18, S54-S63 (2002).
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2002 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1918995
Heber, S., Stoye, J., Frohme, M., Hoheisel, J., Vingron, M.: Resampling Methods in Physical Mapping. Proc. of GfKl 2000. p. 437-444. (2002).
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2001 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1918992
Heber, S., Stoye, J.: Finding all Common Intervals of k Permutations. Proc. of CPM 2001. LNCS. 2089, p. 207-218. (2001).
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2001 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1880197
Heber, S., Stoye, J.: Algorithms for Finding Gene Clusters. Proc. of WABI 2001. LNCS. 2149, p. 252-263. Sppringer, Berlin (2001).
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2001 | Report | PUB-ID: 1970479
Cieliebak, M., Erlebach, T., Lipták, Z., Stoye, J., Welzl, E.: Algorithmic Complexity of Protein Identification: Combinatorics of Weighted Strings. Technical Report. ETH Zürich, Dept. of Computer Science (2001).
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2000 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1918981
Heber, S., Stoye, J., Hoheisel, J., Vingron, M.: Contig Selection in Physical Mapping. Proc. of RECOMB 2000. p. 155-164. (2000).
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2000 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 1918817
Brodal, G.S., Lyngsø, R.B., Pedersen, C.N.S., Stoye, J.: Finding Maximal Pairs with Bounded Gap. In: Crochemore, M. and Gąsieniec, L. (eds.) Matching Patterns (Journal of Discrete Algorithms). p. 77-104. (2000).
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2000 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773345 OA
Krause, A., Stoye, J., Vingron, M.: The SYSTERS protein sequence cluster set. Nucleic Acids Research. 28, 270-272 (2000).
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2000 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773572 OA
Heber, S., Stoye, J., Frohme, M., Hoheisel, J., Vingron, M.: Contig selection in physical mapping. Journal of Computational Biology. 7, 395-408 (2000).
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2000 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1918985
Spang, R., Rehmsmeier, M., Stoye, J.: Sequence Database Search Using Jumping Alignments. Proc. of ISMB 2000. p. 367-375. (2000).
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2000 | Konferenzband | Veröffentlicht | PUB-ID: 1918813
Bornberg-Bauer, E., Rost, U., Stoye, J., Vingron, M. eds: Proceedings of the German Conference on Bioinformatics, GCB 2000. Logos Verlag, Berlin (2000).
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1999 | Report | PUB-ID: 1970509
Brodal, G.S., Lyngsø, R.B., Pedersen, C.N.S., Stoye, J.: Finding Maximal Pairs with Bounded Gap. Report. BRICS, Department of Computer Science, University of Aarhus (1999).
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1999 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1918971
Brodal, G.S., Lyngsø, R.B., Pedersen, C.N.S., Stoye, J.: Finding Maximal Pairs with Bounded Gap. Proc. of CPM 1999. LNCS. 1645, p. 134-149. (1999).
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1998 | Report | PUB-ID: 1970515
Stoye, J., Gusfield, D.: Simple and Flexible Detection of Contiguous Repeats Using a Suffix Tree. Report. Department of Computer Science, University of California, Davis (1998).
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1998 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1918964
Stoye, J., Gusfield, D.: Simple and Flexible Detection of Contiguous Repeats Using a Suffix Tree (Preliminary Version). Proc. of CPM 1998. LNCS. 1448, p. 140-152. (1998).
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1998 | Report | PUB-ID: 1970513
Gusfield, D., Stoye, J.: Linear Time Algorithms for Finding and Representing all the Tandem Repeats in a String. Report. Department of Computer Science, University of California, Davis (1998).
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