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421 Publikationen

2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916552
da Silva, Poly H., Machado, Raphael, Dantas, Simone, and Dias Vieira Braga, Marília. 2017. “Genomic Distance with High Indel Costs”. IEEE/ACM Transactions on Computational Biology and Bioinformatics 14 (3): 728-732.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2907587
Holley, Guillaume, Wittler, Roland, Stoye, Jens, and Hach, Faraz. 2017. “Dynamic Alignment-Free and Reference-Free Read Compression”. In Proceedings of RECOMB 2017, 10229:50-65. Lecture Notes in Bioinformatics.
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2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2913016
Schulz, Tizian, Stoye, Jens, and Dörr, Daniel. 2017. “Finding Teams in Graphs and its Application to Spatial Gene Cluster Discovery”. In Proceedings of RECOMB-CG 2017, 1704:197-212. Lecture Notes in Bioinformatics. Berlin: Springer Verlag.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909967
Dörr, Daniel, Kowada, Luis Antonio B., Soares de Araujo, Francisco Eloi, Deshpande, Shachi, Dantas, Simone, Moret, Bernard M. E., and Stoye, Jens. 2017. “New Genome Similarity Measures based on Conserved Gene Adjacencies”. Journal of Computational Biology 24 (6): 616-634.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900943
Langenkämper, Daniel, Jakobi, Tobias, Feld, Dustin, Jelonek, Lukas, Goesmann, Alexander, and Nattkemper, Tim Wilhelm. 2016. “Comparison of Acceleration Techniques for Selected Low-Level Bioinformatics Operations”. Frontiers in Genetics 7: 5: 5.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900129 OA
Holley, Guillaume, Wittler, Roland, and Stoye, Jens. 2016. “Bloom Filter Trie: an alignment-free and reference-free data structure for pan-genome storage”. Algorithms for Molecular Biology 11 (1): 3: 3.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901477
Ahmed Raza, Shan E, Langenkämper, Daniel, Sirinukunwattana, Korsuk, Epstein, David, Nattkemper, Tim Wilhelm, and Rajpoot, Nasir M. 2016. “Robust normalization protocols for multiplexed fluorescence bioimage analysis”. BioData Mining 9 (1): 11: 11.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905930 OA
Winter, Sascha, Jahn, Katharina, Wehner, Stefanie, Kuchenbecker, Leon, Marz, Manja, Stoye, Jens, and Böcker, Sebastian. 2016. “Finding approximate gene clusters with GECKO 3”. Nucleic Acids Research 44 (20): 9600-9610: gkw843.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2903708
Rubert, Diego, Feijão, Pedro, Dias Vieira Braga, Marília, Stoye, Jens, and Martinez, Fábio Henrique Viduani. 2016. “A Linear Time Approximation Algorithm for the DCJ Distance for Genomes with Bounded Number of Duplicates”. In Algorithms in Bioinformatics. WABI 2016, ed. Martin Frith and Christian Nørgaard Storm Pedersen, 9838:293-306. Lecture Notes in Bioinformatics. Cham: Springer.
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2016 | Bielefelder E-Dissertation | PUB-ID: 2906743 OA
Bremges, Andreas. 2016. Assembling the microbial dark matter. Bielefeld: Universität Bielefeld.
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2016 | Bielefelder E-Dissertation | PUB-ID: 2902049 OA
Dörr, Daniel. 2016. Gene family-free genome comparison. Bielefeld: Universität Bielefeld.
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2016 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2901740
Luhmann, Nina, Thévenin, Annelyse, Ouangraoua, Aida, Wittler, Roland, and Chauve, Cedric. 2016. “The SCJ small parsimony problem for weighted gene adjacencies”. In Proceedings 12th International Symposium, ISBRA 2016, 9683:200-210. Lecture Notes in Computer Science. Springer International Publishing.
PUB | DOI | Download (ext.) | arXiv
 
2016 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2900111
Kowada, Luis Antonio B., Doerr, Daniel, Dantas, Simone, and Stoye, Jens. 2016. “New Genome Similarity Measures based on Conserved Gene Adjacencies”. In Research in Computational Molecular Biology. RECOMB 2016, ed. Mona Singh, 9649:204-224. Lecture Notes in Bioinformatics (LNBI). Springer.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900421
Krause, Lutz, Nones, Katia, Loffler, Kelly A., Nancarrow, Derek, Oey, Harald, Tang, Yup Hang, Wayte, Nicola J., et al. 2016. “Identification of the CIMP-like subtype and aberrant methylation of members of the chromosomal segregation and spindle assembly pathways in esophageal adenocarcinoma”. Carcinogenesis 37 (4): 356-365.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Konferenzband | Veröffentlicht | PUB-ID: 2912258
Hölldobler, Steffen, ed. 2016. “Genfamilienfreier Genomvergleich”, LNI, D-16: 91-100.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911748
Krahn, Thomas, Wibberg, Daniel, Maus, Irena, Winkler, Anika, Pühler, Alfred, Poirel, Laurent, and Schlüter, Andreas. 2015. “Complete Genome Sequence ofAcinetobacter baumanniiCIP 70.10, a Susceptible Reference Strain for Comparative Genome Analyses”. Genome Announcements 3 (4): e00850-15.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2715682
Henning, Peter, Kuich, Julius Lloyd, Hoffmann, Nils, and Stefan, Kempa. 2015. “Maui-VIA: a user-friendly software for visual identification, alignment, correction, and quantification of gas chromatography–mass spectrometry data”. Frontiers in Bioengineering and Biotechnology 2 (84): 84.
PUB | DOI | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2726366 OA
Viduani Martinez, Fábio Henrique, Feijão, Pedro, Dias Vieira Braga, Marília, and Stoye, Jens. 2015. “On the family-free DCJ distance and similarity”. Algorithms for Molecular Biology 10 (1): 13: 13.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764612 OA
Wittler, Roland, Marschall, Tobias, Schönhuth, Alexander, and Makinen, Veli. 2015. “Repeat- and error-aware comparison of deletions”. Bioinformatics 31 (18): 2947-2954.
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2015 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2757497
Holley, Guillaume, Wittler, Roland, and Stoye, Jens. 2015. “Bloom Filter Trie - a data structure for pan-genome storage”. In Algorithms in Bioinformatics. WABI 2015. Proceedings, ed. Mihai Pop and Hélène Touzet, 9289:217-230. Lecture Notes in Computer Science . Berlin, Heidelberg: Springer.
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