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421 Publikationen

2020 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2939618 OA
Alanko, Jarno, Bannai, Hideo, Cazaux, Bastien, Peterlongo, Pierre, and Stoye, Jens. 2020. “Finding all maximal perfect haplotype blocks in linear time”. Algorithms for Molecular Biology 15: 2: 2.
PUB | PDF | PubMed | Europe PMC
 
2020 | Konferenzbeitrag | Angenommen | PUB-ID: 2939729
Bohnenkämper, Leonard, Dias Vieira Braga, Marília, Dörr, Daniel, and Stoye, Jens. Accepted. “Computing the rearrangement distance of natural genomes”. In Proceedings of RECOMB 2020. LNBI.
PUB
 
2020 | Preprint | Veröffentlicht | PUB-ID: 2939861
Bohnenkämper, Leonard, Dias Vieira Braga, Marília, Dörr, Daniel, and Stoye, Jens. 2020. “Computing the rearrangement distance of natural genomes”. arXiv:2001.02139.
PUB | arXiv
 
2020 | Zeitschriftenaufsatz | Angenommen | PUB-ID: 2939598
Sevillya, Gur, Dörr, Daniel, Lerner, Yael, Stoye, Jens, Steel, Mike, and Snir, Sagi. Accepted. “Horizontal Gene Transfer Phylogenetics: A Random Walk Approach”. Molecular Biology and Evolution.
PUB | DOI | PubMed | Europe PMC
 
2020 | Preprint | PUB-ID: 2940602
Haghshenas, Ehsan, Asghari, Hossein, Stoye, Jens, Chauve, Cedric, and Hach, Faraz. 2020. “HASLR: Fast Hybrid Assembly of Long Reads”.
PUB | bioRxiv
 
2020 | Bielefelder E-Dissertation | PUB-ID: 2940338 OA
Jaenicke, Sebastian. 2020. The MGX framework for microbial community analysis. Bielefeld: Universität Bielefeld.
PUB | PDF | DOI
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932884
Oey, Harald, Zakrzewski, Martha, Gravermann, Kerstin, Young, Neil D., Korhonen, Pasi K., Gobert, Geoffrey N., Nawaratna, Sujeevi, et al. 2019. “Whole-genome sequence of the bovine blood fluke Schistosoma bovis supports interspecific hybridization with S. haematobium”. PLOS Pathogens 15 (1): e1007513: e1007513.
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933161 OA
Hassan, Hezha, and Shanak, Siba. 2019. “GOTrapper. A tool to navigate through branches of gene ontology hierarchy”. BMC Bioinformatics 20 (1): 20: 20.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2908574
Luhmann, Nina, Lafond, Manuel, Thévenin, Annelyse, Ouangraoua, Aida, Wittler, Roland, and Chauve, Cedric. 2019. “The SCJ Small Parsimony Problem for Weighted Gene Adjacencies”. IEEE/ACM Transactions on Computational Biology and Bioinformatics 16 (4): 1364-1373.
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Report | Veröffentlicht | PUB-ID: 2939260
Gagie, Travis, Manzini, Giovanni, Navarro, Gonzalo, and Stoye, Jens. 2019. 25 Years of the Burrows-Wheeler Transform. Report from Dagstuhl Seminar 19241. Vol. 9(6). Dagstuhl Reports. Schloss Dagstuhl--Leibniz-Zentrum fuer Informatik.
PUB | DOI
 
2019 | Preprint | Veröffentlicht | PUB-ID: 2939202
Willing, Eyla, Stoye, Jens, and Dias Vieira Braga, Marília. 2019. “Computing the Inversion-Indel Distance”. arXiv: 1909.12877.
PUB | arXiv
 
2019 | Zeitschriftenaufsatz | Im Druck | PUB-ID: 2937712
Rubert, Diego, Martinez, Fábio Henrique Viduani, Stoye, Jens, and Dörr, Daniel. In Press. “Analysis of local genome rearrangement improves resolution of ancestral genomic maps in plants”. BMC Genomics.
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2019 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2937148
Alanko, Jarno, Bannai, Hideo, Cazaux, Bastien, Peterlongo, Pierre, and Stoye, Jens. 2019. “Finding All Maximal Perfect Haplotype Blocks in Linear Time”. In Proceedings of WABI 2019, 143:8:1-8:9. Leibniz International Proceedings in Informatics. LIPIcs. Dagstuhl: Schloss Dagstuhl, Leibniz-Zentrum für Informatik .
PUB | DOI
 
2019 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2936900 OA
Wittler, Roland. 2019. “Alignment- and reference-free phylogenomics with colored de Bruijn graphs”. In Proceedings of WABI 2019, ed. Katharina Huber and Dan Gusfield. Vol. 143. LIPIcs. Dagstuhl, Germany: Schloss Dagstuhl--Leibniz-Zentrum fuer Informatik.
PUB | DOI | Download (ext.)
 
2019 | Datenpublikation | PUB-ID: 2936848 OA
Dörr, Daniel, and Rubert, Diego. 2019. Supplementary Data for "Analysis of local genome rearrangement improves resolution of ancestral genomic maps in plants". Bielefeld University.
PUB | Dateien verfügbar | DOI
 
2019 | Herausgeber*in Sammelwerk | Veröffentlicht | PUB-ID: 2935998 OA
Setubal, João C., Stoye, Jens, and Dutilh, Bas E., eds. 2019. Computational Methods for Microbiome Analysis. Frontiers Research Topics. Lausanne: Frontiers Media.
PUB | Download (ext.)
 
2019 | Preprint | PUB-ID: 2935604 OA
Wittler, Roland. 2019. “Alignment- and reference-free phylogenomics with colored de-Bruijn graphs”. arXiv:1905.04165.
PUB | PDF
 
2019 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2932883
Dörr, Daniel, and Stoye, Jens. 2019. “A Perspective on Comparative and Functional Genomics”. In Bioinformatics and Phylogenetics, ed. Tandy Warnow, 29:361-372. Computational Biology. Cham: Springer .
PUB | DOI
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919346 OA
Hagenfeld, Daniel, Koch, Raphael, Jünemann, Sebastian, Prior, Karola, Harks, Inga, Eickholz, Peter, Hoffmann, Thomas, et al. 2018. “Do we treat our patients or rather periodontal microbes with adjunctive antibiotics in periodontal therapy? A 16S rDNA microbial community analysis”. PLOS ONE 13 (4): e0195534: e0195534.
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919005 OA
Schulz, Tizian, Stoye, Jens, and Dörr, Daniel. 2018. “GraphTeams. A method for discovering spatial gene clusters in Hi-C sequencing data”. BMC Genomics 19 (Suppl. 5): 308: 308.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 

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