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419 Publikationen

2020 | Zeitschriftenaufsatz | Angenommen | PUB-ID: 2939598
Sevillya, G., Dörr, D., Lerner, Y., Stoye, J., Steel, M., & Snir, S. (Accepted). Horizontal Gene Transfer Phylogenetics: A Random Walk Approach. Molecular Biology and Evolution. doi:10.1093/molbev/msz302
PUB | DOI | PubMed | Europe PMC
 
2020 | Preprint | Veröffentlicht | PUB-ID: 2939861
Bohnenkämper, L., Dias Vieira Braga, M., Dörr, D., & Stoye, J. (2020). Computing the rearrangement distance of natural genomes. arXiv:2001.02139
PUB | arXiv
 
2020 | Konferenzbeitrag | Angenommen | PUB-ID: 2939729
Bohnenkämper, L., Dias Vieira Braga, M., Dörr, D., & Stoye, J. (Accepted). Computing the rearrangement distance of natural genomes. Proceedings of RECOMB 2020, LNBI
PUB
 
2020 | Zeitschriftenaufsatz | Angenommen | PUB-ID: 2939618
Alanko, J., Bannai, H., Cazaux, B., Peterlongo, P., & Stoye, J. (Accepted). Finding all maximal perfect haplotype blocks in linear time. Algorithms for Molecular Biology
PUB
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2908574
Luhmann, N., Lafond, M., Thévenin, A., Ouangraoua, A., Wittler, R., & Chauve, C. (2019). The SCJ Small Parsimony Problem for Weighted Gene Adjacencies. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 16(4). doi:10.1109/TCBB.2017.2661761
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933161 OA
Hassan, H., & Shanak, S. (2019). GOTrapper. A tool to navigate through branches of gene ontology hierarchy. BMC Bioinformatics, 20(1), 20. doi:10.1186/s12859-018-2581-8
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2019 | Report | Veröffentlicht | PUB-ID: 2939260
Gagie, T., Manzini, G., Navarro, G., & Stoye, J. (2019). 25 Years of the Burrows-Wheeler Transform. Report from Dagstuhl Seminar 19241 (Dagstuhl Reports, 9(6). Schloss Dagstuhl--Leibniz-Zentrum fuer Informatik. doi:10.4230/DagRep.9.6.55
PUB | DOI
 
2019 | Preprint | Veröffentlicht | PUB-ID: 2939202
Willing, E., Stoye, J., & Dias Vieira Braga, M. (2019). Computing the Inversion-Indel Distance. arXiv: 1909.12877
PUB | arXiv
 
2019 | Zeitschriftenaufsatz | Im Druck | PUB-ID: 2937712
Rubert, D., Martinez, F. H. V., Stoye, J., & Dörr, D. (In Press). Analysis of local genome rearrangement improves resolution of ancestral genomic maps in plants. BMC Genomics
PUB
 
2019 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2937148
Alanko, J., Bannai, H., Cazaux, B., Peterlongo, P., & Stoye, J. (2019). Finding All Maximal Perfect Haplotype Blocks in Linear Time. Proceedings of WABI 2019, Leibniz International Proceedings in Informatics. LIPIcs, 143, 8:1-8:9. Dagstuhl: Schloss Dagstuhl, Leibniz-Zentrum für Informatik . doi:10.4230/LIPICS.WABI.2019.8
PUB | DOI
 
2019 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2936900 OA
Wittler, R. (2019). Alignment- and reference-free phylogenomics with colored de Bruijn graphs. In K. Huber & D. Gusfield (Eds.), LIPIcs: Vol. 143. Proceedings of WABI 2019 Dagstuhl, Germany: Schloss Dagstuhl--Leibniz-Zentrum fuer Informatik. doi:10.4230/LIPIcs.WABI.2019.2
PUB | DOI | Download (ext.)
 
2019 | Datenpublikation | PUB-ID: 2936848 OA
Dörr, D., & Rubert, D. (2019). Supplementary Data for "Analysis of local genome rearrangement improves resolution of ancestral genomic maps in plants". Bielefeld University. doi:10.4119/unibi/2936848
PUB | Dateien verfügbar | DOI
 
2019 | Herausgeber*in Sammelwerk | Veröffentlicht | PUB-ID: 2935998 OA
Setubal J. C., Stoye J., & Dutilh B. E. (Eds.) (2019). Computational Methods for Microbiome Analysis (Frontiers Research Topics). Lausanne: Frontiers Media.
PUB | Download (ext.)
 
2019 | Preprint | PUB-ID: 2935604 OA
Wittler, R. (2019). Alignment- and reference-free phylogenomics with colored de-Bruijn graphs. arXiv:1905.04165
PUB | PDF
 
2019 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2932883
Dörr, D., & Stoye, J. (2019). A Perspective on Comparative and Functional Genomics. In T. Warnow (Ed.), Computational Biology: Vol. 29. Bioinformatics and Phylogenetics (pp. 361-372). Cham: Springer . doi:10.1007/978-3-030-10837-3_14
PUB | DOI
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932884
Oey, H., Zakrzewski, M., Gravermann, K., Young, N. D., Korhonen, P. K., Gobert, G. N., Nawaratna, S., et al. (2019). Whole-genome sequence of the bovine blood fluke Schistosoma bovis supports interspecific hybridization with S. haematobium. PLOS Pathogens, 15(1), e1007513. doi:10.1371/journal.ppat.1007513
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930268
Holley, G., Wittler, R., Stoye, J., & Hach, F. (2018). Dynamic Alignment-Free and Reference-Free Read Compression. JOURNAL OF COMPUTATIONAL BIOLOGY, 25(7), 825-836. doi:10.1089/cmb.2018.0068
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2913924
Anselmetti, Y., Luhmann, N., Bérard, S., Tannier, E., & Chauve, C. (2018). Comparative Methods for Reconstructing Ancient Genome Organization. In J. C. Setubal, J. Stoye, & P. Stadler (Eds.), Methods in Molecular Biology: Vol. 1704. Comparative Genomics: Methods and Protocols (pp. 343-362). New York, NY: Humana Press. doi:10.1007/978-1-4939-7463-4_13
PUB | DOI
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919005 OA
Schulz, T., Stoye, J., & Dörr, D. (2018). GraphTeams. A method for discovering spatial gene clusters in Hi-C sequencing data. BMC Genomics, 19(Suppl. 5), 308. doi:10.1186/s12864-018-4622-0
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919006 OA
Rubert, D., Hoshino, E. A., Dias Vieira Braga, M., Stoye, J., & Martinez, F. H. V. (2018). Computing the family-free DCJ similarity. BMC Bioinformatics, 19(Suppl. 6), 152. doi:10.1186/s12859-018-2130-5
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 

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