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421 Publikationen

2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2674387
ReadXplorer - Visualization and Analysis of Mapped Sequences
Hilker, Rolf, ReadXplorer - Visualization and Analysis of Mapped Sequences. Bioinformatics 30 (16). , 2014
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2665038
Improving the genome annotation of the acarbose producer Actinoplanes sp. SE50/110 by sequencing enriched 5'-ends of primary transcripts
Schwientek, Patrick, Improving the genome annotation of the acarbose producer Actinoplanes sp. SE50/110 by sequencing enriched 5'-ends of primary transcripts. Journal of Biotechnology 190 (). , 2014
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2685988
Discovery of transcription start sites in the Chinese hamster genome by next-generation RNA sequencing
Jakobi, Tobias, Discovery of transcription start sites in the Chinese hamster genome by next-generation RNA sequencing. Journal of Biotechnology 190 (). , 2014
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2014 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2690122
Scaffolding of Ancient Contigs and Ancestral Reconstruction in a Phylogenetic Framework
Luhmann, Nina, Scaffolding of Ancient Contigs and Ancestral Reconstruction in a Phylogenetic Framework. Proc. of BSB 2014 8826 (). , 2014
PUB | DOI
 
2014 | Bielefelder E-Dissertation | PUB-ID: 2677466 OA
Computational methods for high-throughput metabolomics
Hoffmann, Nils, Computational methods for high-throughput metabolomics. (). Bielefeld, 2014
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2691246
Genomic Inverse PCR for Exploration of Ligated Breakpoints (GIPFEL), a New Method to Detect Translocations in Leukemia
Fueller, Elisa, Genomic Inverse PCR for Exploration of Ligated Breakpoints (GIPFEL), a New Method to Detect Translocations in Leukemia. PloS one 9 (8). , 2014
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Lexikoneintrag | Veröffentlicht | PUB-ID: 2693552
Suffix Tree Construction
Stoye, Jens, Suffix Tree Construction. Encyclopedia of Algorithms (). , 2014
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2643941
BiPACE 2D – Graph-based multiple alignment for comprehensive two-dimensional gas chromatography–mass spectrometry
Hoffmann, Nils, BiPACE 2D – Graph-based multiple alignment for comprehensive two-dimensional gas chromatography–mass spectrometry. Bioinformatics 30 (7). , 2014
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2693409
Metatranskriptomik der Mikrobiota aus der menschlichen Achselhöhle
Fredrich, Eugenie, Metatranskriptomik der Mikrobiota aus der menschlichen Achselhöhle. BIOspektrum 20 (5). , 2014
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2691732
Carbohydrate-active enzymes identified by metagenomic analysis of deep-sea sediment bacteria
Klippel, Barbara, Carbohydrate-active enzymes identified by metagenomic analysis of deep-sea sediment bacteria. Extremophiles 18 (5). , 2014
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2691279
A New Workflow for Whole-Genome Sequencing of Single Human Cells
Binder, Vera, A New Workflow for Whole-Genome Sequencing of Single Human Cells. Human mutation (). , 2014
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2665333
Mycoplasma salivarium as a Dominant Coloniser of Fanconi Anaemia Associated Oral Carcinoma
Henrich, Birgit, Mycoplasma salivarium as a Dominant Coloniser of Fanconi Anaemia Associated Oral Carcinoma. PLoS ONE 9 (3). , 2014
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Bielefelder E-Dissertation | PUB-ID: 2673418 OA
POPSEQ Anchoring and ordering contig assemblies from next generation sequencing data by population sequencing
Mascher, Martin, POPSEQ Anchoring and ordering contig assemblies from next generation sequencing data by population sequencing. (). Bielefeld, 2014
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529309
Changes in Root Bacterial Communities Associated to Two Different Development Stages of Canola (Brassica napus L. var oleifera) Evaluated through Next-Generation Sequencing
Bolzan de Campos, Samanta, Changes in Root Bacterial Communities Associated to Two Different Development Stages of Canola (Brassica napus L. var oleifera) Evaluated through Next-Generation Sequencing. Microbial Ecology 65 (3). , 2013
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2013 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2611641
Restricted DCJ-Indel Model Revisited
Dias Vieira Braga, Marília, Restricted DCJ-Indel Model Revisited. Advances in Bioinformatics and Computational Biology. BSB 2013 8213 (). Cham, 2013
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2611630 OA
On the Inversion-Indel Distance
Willing, Eyla, On the Inversion-Indel Distance. BMC Bioinformatics 14 (Suppl 15: Proc. of RECOMB-CG 2013). , 2013
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2013 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2611648
The Potential of Family-Free Genome Comparison
Dias Vieira Braga, Marília, The Potential of Family-Free Genome Comparison. Models and Algorithms for Genome Evolution 19 (). , 2013
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2575011
metaBEETL: high-throughput analysis of heterogeneous microbial populations from shotgun DNA sequences
Ander, Christina, metaBEETL: high-throughput analysis of heterogeneous microbial populations from shotgun DNA sequences. BMC Bioinformatics 14 (Suppl 5: Proc. of RECOMB-Seq 2013). , 2013
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2555342
Genome sequence of the plant growth promoting strain Bacillus amyloliquefaciens subsp. plantarum B9601-Y2 and expression of mersacidin and other secondary metabolites
He, Pengfei, Genome sequence of the plant growth promoting strain Bacillus amyloliquefaciens subsp. plantarum B9601-Y2 and expression of mersacidin and other secondary metabolites. Journal of biotechnology 164 (2). , 2013
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2641228
Corrigendum: Updating benchtop sequencing performance comparison
Jünemann, Sebastian, Corrigendum: Updating benchtop sequencing performance comparison. Nature biotechnology 31 (12). , 2013
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2492825
In vitro-induced response patterns of antileukemic T cells: characterization by spectratyping and immunophenotyping
Reuther, Susanne, In vitro-induced response patterns of antileukemic T cells: characterization by spectratyping and immunophenotyping. Clinical and Experimental Medicine 13 (1). , 2013
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2611643
The Genesis of the DCJ Formula
Bergeron, Anne, The Genesis of the DCJ Formula. Models and Algorithms for Genome Evolution 19 (). , 2013
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2013 | Bielefelder E-Dissertation | PUB-ID: 2604883 OA
Comparative genomics on gene and single nucleotide level
Blom, Jochen, Comparative genomics on gene and single nucleotide level. (). Bielefeld, 2013
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2013 | Bielefelder E-Dissertation | PUB-ID: 2594322 OA
VANESA - A bioinformatics software application for the modeling, visualization, analysis, and simulation of biological networks in systems biology applications
Janowski, Sebastian Jan, VANESA - A bioinformatics software application for the modeling, visualization, analysis, and simulation of biological networks in systems biology applications. (). Bielefeld, 2013
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2575361
Next-generation-sequencing-spectratyping reveals public T-cell receptor repertoires in pediatric very severe aplastic anemia and identifies a beta chain CDR3 sequence associated with hepatitis-induced pathogenesis
Krell, Pina, Next-generation-sequencing-spectratyping reveals public T-cell receptor repertoires in pediatric very severe aplastic anemia and identifies a beta chain CDR3 sequence associated with hepatitis-induced pathogenesis. Haematologica 98 (9). , 2013
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Lexikoneintrag | Veröffentlicht | PUB-ID: 2577323
Taxonomic classification of metagenomic shotgun sequences with CARMA3
Gerlach, Wolfgang, Taxonomic classification of metagenomic shotgun sequences with CARMA3. Encyclopedia of Metagenomics (). , 2013
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2625914
Categorization of two-photon microscopy images of human cartilage into states of osteoarthritis
Bergmann, Thorsten, Categorization of two-photon microscopy images of human cartilage into states of osteoarthritis. Osteoarthritis And Cartilage 21 (8). , 2013
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2566922
Updating benchtop sequencing performance comparison
Jünemann, Sebastian, Updating benchtop sequencing performance comparison. Nature Biotechnology 31 (4). , 2013
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Konferenzband | Veröffentlicht | PUB-ID: 2616537
Algorithms in Bioinformatics
Darling, Aaron, Algorithms in Bioinformatics. 8126 (). Heidelberg, 2013
PUB | DOI
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2611633 OA
Statistics for approximate gene clusters
Jahn, Katharina, Statistics for approximate gene clusters. BMC Bioinformatics 14 (Suppl 15: Proc. of RECOMB-CG 2013). , 2013
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548236
Comparative RNA-sequencing of the acarbose producer Actinoplanes sp. SE50/110 cultivated in different growth media
Schwientek, Patrick, Comparative RNA-sequencing of the acarbose producer Actinoplanes sp. SE50/110 cultivated in different growth media. Journal of Biotechnology 167 (2). , 2013
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548286
Draft whole genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344
Luque-Almagro, Víctor M, Draft whole genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344. Environmental Microbiology 15 (1). , 2013
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2552092 OA
Unraveling overlapping deletions by agglomerative clustering
Wittler, Roland, Unraveling overlapping deletions by agglomerative clustering. BMC Genomics 14 (Suppl 1). , 2013
PUB | Dateien verfügbar | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2659331
Extending the Algebraic Formalism for Genome Rearrangements to Include Linear Chromosomes
Feijão, Pedro, Extending the Algebraic Formalism for Genome Rearrangements to Include Linear Chromosomes. IEEE/ACM Transactions on Computational Biology and Bioinformatics 10 (4). , 2013
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529202
MetaSAMS - A novel software platform for taxonomic classification, functional annotation and comparative analysis of metagenome datasets
Zakrzewski, Martha, MetaSAMS - A novel software platform for taxonomic classification, functional annotation and comparative analysis of metagenome datasets. Journal of Biotechnology 167 (2). , 2013
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2560353 OA
Stochastic errors vs. modeling errors in distance based phylogenetic reconstructions
Dörr, Daniel, Stochastic errors vs. modeling errors in distance based phylogenetic reconstructions. Algorithms for Molecular Biology 7 (1). , 2012
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2512642 OA
Gene family assignment-free comparative genomics
Dörr, Daniel, Gene family assignment-free comparative genomics. BMC Bioinformatics 13 (Suppl 19: Proc. of RECOMB-CG 2012). , 2012
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2498160 OA
Complete genome sequence, lifestyle, and multi-drug resistance of the human pathogen Corynebacterium resistens DSM 45100 isolated from blood samples of a leukemia patient
Schröder, Jasmin, Complete genome sequence, lifestyle, and multi-drug resistance of the human pathogen Corynebacterium resistens DSM 45100 isolated from blood samples of a leukemia patient. BMC Genomics 13 (1). , 2012
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2517239 OA
Combining peak- and chromatogram-based retention time alignment algorithms for multiple chromatography-mass spectrometry datasets
Hoffmann, Nils, Combining peak- and chromatogram-based retention time alignment algorithms for multiple chromatography-mass spectrometry datasets. BMC Bioinformatics 13 (1). , 2012
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2512644 OA
Multiple genome comparison based on overlap regions of pairwise local alignments
Jahn, Katharina, Multiple genome comparison based on overlap regions of pairwise local alignments. BMC Bioinformatics 13 (Suppl. 19: Proc. of RECOMB-CG 2012). , 2012
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2513347
Pangenomic Study of Corynebacterium diphtheriae That Provides Insights into the Genomic Diversity of Pathogenic Isolates from Cases of Classical Diphtheria, Endocarditis, and Pneumonia
Trost, Eva, Pangenomic Study of Corynebacterium diphtheriae That Provides Insights into the Genomic Diversity of Pathogenic Isolates from Cases of Classical Diphtheria, Endocarditis, and Pneumonia. Journal of bacteriology 194 (12). , 2012
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2490949
Identification and Characterization of Microcin S, a New Antibacterial Peptide Produced by Probiotic Escherichia coli G3/10
Zschuttig, Anke, Identification and Characterization of Microcin S, a New Antibacterial Peptide Produced by Probiotic Escherichia coli G3/10. PLoS ONE 7 (3). , 2012
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2709879
Accelerating investigation of food-borne disease outbreaks using pro-active geospatial modeling of food supply chains
Doerr, D, Accelerating investigation of food-borne disease outbreaks using pro-active geospatial modeling of food supply chains. HealthGIS '12: Proceedings of the First ACM SIGSPATIAL International Workshop on Use of GIS in Public Health (). , 2012
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2527519
Evaluation of qPCR curve analysis methods for reliable biomarker discovery: Bias, resolution, precision, and implications
Ruijter, Jan M, Evaluation of qPCR curve analysis methods for reliable biomarker discovery: Bias, resolution, precision, and implications. Methods. A companion to methods in enzymology (San Diego, Calif.) 59 (1). , 2012
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2553484
Probabilistic Arithmetic Automata and Their Applications
Marschall, T., Probabilistic Arithmetic Automata and Their Applications. Ieee/Acm Transactions On Computational Biology And Bioinformatics 9 (6). , 2012
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Bielefelder E-Dissertation | PUB-ID: 2468026 OA
Taxonomic classification of metagenomic sequences
Gerlach, Wolfgang, Taxonomic classification of metagenomic sequences. (). Bielefeld, 2012
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2553300
Linearization of ancestral multichromosomal genomes
Manuch, Jan, Linearization of ancestral multichromosomal genomes. BMC Bioinformatics 13 (Proc. of RECOMB-CG 2012). , 2012
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2659289
Genome Sequence and Assembly of Bos indicus
Canavez, F. C., Genome Sequence and Assembly of Bos indicus. Journal of Heredity 103 (3). , 2012
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2659385
A GRASP-based Heuristic for the Project Portfolio Selection Problem
Mira, Cleber, A GRASP-based Heuristic for the Project Portfolio Selection Problem. 2012 IEEE 15th International Conference on Computational Science and Engineering (). , 2012
PUB | DOI | WoS
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2553455
The large universal Pantoea plasmid LPP-1 plays a major role in biological and ecological diversification
De Maayer, Pieter, The large universal Pantoea plasmid LPP-1 plays a major role in biological and ecological diversification. Bmc Genomics 13 (1). , 2012
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2486060 OA
The complete genome sequence of the acarbose producer Actinoplanes sp. SE50/110
Schwientek, Patrick, The complete genome sequence of the acarbose producer Actinoplanes sp. SE50/110. BMC Genomics 13 (1). , 2012
PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2659280
Rearrangement-Based Phylogeny Using the Single-Cut-or-Join Operation.
Biller, Priscilla, Rearrangement-Based Phylogeny Using the Single-Cut-or-Join Operation.. IEEE/ACM transactions on computational biology and bioinformatics 10 (1). , 2012
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Konferenzband | Veröffentlicht | PUB-ID: 2510416
Combinatorial Pattern Matching
Kärkkäinen, Juha, Combinatorial Pattern Matching. 7354 (). Heidelberg, 2012
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2012 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2468382 OA
Generic Software Frameworks for GC-MS Based Metabolomics
Hoffmann, Nils, Generic Software Frameworks for GC-MS Based Metabolomics. Metabolomics (). , 2012
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2510984
UniMoG - A unifying framework for genomic distance calculation and sorting based on DCJ
Hilker, Rolf, UniMoG - A unifying framework for genomic distance calculation and sorting based on DCJ. Bioinformatics 28 (19). , 2012
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2542210
Sequence of Two Plasmids from Clostridium perfringens Chicken Necrotic Enteritis Isolates and Comparison with C. perfringens Conjugative Plasmids
Parreira, Valeria R., Sequence of Two Plasmids from Clostridium perfringens Chicken Necrotic Enteritis Isolates and Comparison with C. perfringens Conjugative Plasmids. PLoS ONE 7 (11). , 2012
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Bielefelder E-Dissertation | PUB-ID: 2533144 OA
Development of computational methods for the analysis of metagenome and metatranscriptome data
Zakrzewski, Martha, Development of computational methods for the analysis of metagenome and metatranscriptome data. (). Bielefeld, 2012
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2493233
ALGORITHMS FOR JUMBLED PATTERN MATCHING IN STRINGS
Burcsi, Peter, ALGORITHMS FOR JUMBLED PATTERN MATCHING IN STRINGS. International Journal of Foundations of Computer Science 23 (02). , 2012
PUB | DOI | WoS | arXiv
 
2012 | Bielefelder E-Dissertation | PUB-ID: 2484427 OA
Genomics and transcriptomics of the industrial acarbose producer Actinoplanes sp. SE50/110
Schwientek, Patrick, Genomics and transcriptomics of the industrial acarbose producer Actinoplanes sp. SE50/110. (). Bielefeld, 2012
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2012 | Bielefelder E-Dissertation | PUB-ID: 2517237 OA
MCC-IMS data analysis using automated spectra processing and explorative visualisation methods
Bunkowski, Alexander, MCC-IMS data analysis using automated spectra processing and explorative visualisation methods. (). Bielefeld, 2012
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526281
Complete Genome Sequence of the Porcine Isolate Enterococcus faecalis D32
Zischka, M., Complete Genome Sequence of the Porcine Isolate Enterococcus faecalis D32. Journal of Bacteriology 194 (19). , 2012
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526298
Complete Genome Sequence of the Hydrogenotrophic, Methanogenic Archaeon Methanoculleus bourgensis Strain MS2T, Isolated from a Sewage Sludge Digester
Maus, Irena, Complete Genome Sequence of the Hydrogenotrophic, Methanogenic Archaeon Methanoculleus bourgensis Strain MS2T, Isolated from a Sewage Sludge Digester. Journal of Bacteriology 194 (19). , 2012
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526933
Importance of rare taxa for bacterial diversity in the rhizosphere of Bt- and conventional maize varieties
Dohrmann, Anja B, Importance of rare taxa for bacterial diversity in the rhizosphere of Bt- and conventional maize varieties. The ISME journal 7 (1). , 2012
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2517230
Bacterial Community Shift in Treated Periodontitis Patients Revealed by Ion Torrent 16S rRNA Gene Amplicon Sequencing
Jünemann, Sebastian, Bacterial Community Shift in Treated Periodontitis Patients Revealed by Ion Torrent 16S rRNA Gene Amplicon Sequencing. PLoS ONE 7 (8). , 2012
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2501312
Metabolite fingerprinting of barley whole seeds, endosperms, and embryos during industrial malting
Gorzolka, Karin, Metabolite fingerprinting of barley whole seeds, endosperms, and embryos during industrial malting. Journal of Biotechnology 159 (3). , 2012
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2490286
Ion Torrent PGM sequencing for genomic typing of Neisseria meningitidis for rapid determination of multiple layers of typing information
Vogel, Ulrich, Ion Torrent PGM sequencing for genomic typing of Neisseria meningitidis for rapid determination of multiple layers of typing information. Journal of clinical microbiology 50 (6). , 2012
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1897974
Balanced Vertices in Trees and a Simpler Algorithm to Compute the Genomic Distance
Erdős, Péter L., Balanced Vertices in Trees and a Simpler Algorithm to Compute the Genomic Distance. Applied Mathematics Letters 24 (1). , 2011
PUB | DOI | WoS | arXiv
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2396558 OA
On the weight of indels in genomic distances
Dias Vieira Braga, Marília, On the weight of indels in genomic distances. BMC Bioinformatics 12 (Suppl 9: RECOMB-CG 2011). , 2011
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2396509 OA
Genomic distance under gene substitutions
Dias Vieira Braga, Marília, Genomic distance under gene substitutions. BMC Bioinformatics 12 (Suppl 9: Proc. of RECOMB-CG 2011). , 2011
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2091794
Double Cut and Join with Insertions and Deletions
Dias Vieira Braga, Marília, Double Cut and Join with Insertions and Deletions. Journal of Computational Biology 18 (9). , 2011
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2091790
Restricted DCJ Model. Rearrangement Problems with Chromosome Reincorporation
Kovac, Jakub, Restricted DCJ Model. Rearrangement Problems with Chromosome Reincorporation. Journal of Computational Biology 18 (9). , 2011
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2354746
Sequencing of high G + C microbial genomes using the ultrafast pyrosequencing technology
Schwientek, Patrick, Sequencing of high G + C microbial genomes using the ultrafast pyrosequencing technology. Journal of Biotechnology 155 (1). , 2011
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2375634
The ubiquitous plasmid pXap41 in the invasive phytopathogen Xanthomonas arboricola pv. pruni: complete sequence and comparative genomic analysis
Pothier, Joël F., The ubiquitous plasmid pXap41 in the invasive phytopathogen Xanthomonas arboricola pv. pruni: complete sequence and comparative genomic analysis. FEMS Microbiology Letters 323 (1). , 2011
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2404767
The Genome of the Plant Growth-Promoting Rhizobacterium Paenibacillus polymyxa M-1 Contains Nine Sites Dedicated to Nonribosomal Synthesis of Lipopeptides and Polyketides.
Niu, Ben, The Genome of the Plant Growth-Promoting Rhizobacterium Paenibacillus polymyxa M-1 Contains Nine Sites Dedicated to Nonribosomal Synthesis of Lipopeptides and Polyketides.. Journal of Bacteriology 193 (20). , 2011
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2354731
Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid
Wibberg, Daniel, Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid. Journal of Biotechnology 155 (1). , 2011
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2659339
SCJ: A Breakpoint-Like Distance that Simplifies Several Rearrangement Problems
Feijão, Pedro, SCJ: A Breakpoint-Like Distance that Simplifies Several Rearrangement Problems. IEEE/ACM Transactions on Computational Biology and Bioinformatics 8 (5). , 2011
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326511
Genome sequence of B. amyloliquefaciens type strain DSM7(T) reveals differences to plant-associated B. amyloliquefaciens FZB42
Rückert, Christian, Genome sequence of B. amyloliquefaciens type strain DSM7(T) reveals differences to plant-associated B. amyloliquefaciens FZB42. Journal of Biotechnology 155 (1). , 2011
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2373808
Multivariate Image Mining
Herold, Julia, Multivariate Image Mining. Wiley Interdisciplinary Reviews: DATA MINING AND KNOWLEDGE DISCOVERY 1 (1). , 2011
PUB | DOI | WoS
 
2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2659373
The SinBiota 2.0 Biodiversity Information System
Mira, Cleber, The SinBiota 2.0 Biodiversity Information System. 2011 IEEE Seventh International Conference on eScience (). , 2011
PUB | DOI
 
2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2401639
On prefix normal words
Fici, Gabriele, On prefix normal words. Development in Language Theory. 15th International Conference (DLT 2011). Proceedings 6795 (). Berlin ; Heidelberg, 2011
PUB | DOI
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2401665
KABOOM! A new suffix-array based algorithm for clustering expression data
Hazelhurst, Scott, KABOOM! A new suffix-array based algorithm for clustering expression data. Bioinformatics 27 (24). , 2011
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2375954
Relationship of Bacillus amyloliquefaciens clades associated with strains DSM 7T and FZB42T: a proposal for Bacillus amyloliquefaciens subsp. amyloliquefaciens subsp. nov. and Bacillus amyloliquefaciens subsp. plantarum subsp. nov. based on complete genome sequence comparisons
Borriss, Rainer, Relationship of Bacillus amyloliquefaciens clades associated with strains DSM 7T and FZB42T: a proposal for Bacillus amyloliquefaciens subsp. amyloliquefaciens subsp. nov. and Bacillus amyloliquefaciens subsp. plantarum subsp. nov. based on complete genome sequence comparisons. Int J Syst Evol Microbiol 61 (8). , 2011
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2472468
Erwinia amylovora novel plasmid pEI70: Complete sequence, biogeography, and role in aggressiveness in the fire blight phytopathogen
Llop, P., Erwinia amylovora novel plasmid pEI70: Complete sequence, biogeography, and role in aggressiveness in the fire blight phytopathogen. PLoS one 6 (12). , 2011
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2423955
Efficient Reconstruction of RC-Equivalent Strings
Cicalese, Ferdinando, Efficient Reconstruction of RC-Equivalent Strings. Proc. WOCA 6460 (). , 2011
PUB | DOI
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326445
RAPYD - Rapid Annotation Platform for Yeast Data
Schneider, Jessica, RAPYD - Rapid Annotation Platform for Yeast Data. Journal of Biotechnology 155 (1). , 2011
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2307104
Metabolic Versatility and Antibacterial Metabolite Biosynthesis Are Distinguishing Genomic Features of the Fire Blight Antagonist Pantoea vagans C9-1
Smits, Theo H. M., Metabolic Versatility and Antibacterial Metabolite Biosynthesis Are Distinguishing Genomic Features of the Fire Blight Antagonist Pantoea vagans C9-1. PLoS ONE 6 (7). , 2011
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2448409
The genomics of Acinetobacter baumannii: Insights into genome plasticity, antimicrobial resistance and pathogenicity
Imperi, F., The genomics of Acinetobacter baumannii: Insights into genome plasticity, antimicrobial resistance and pathogenicity. IUBMB life 63 (12). , 2011
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326455
RhizoRegNet-A database of rhizobial transcription factors and regulatory networks
Krol, Elizaveta, RhizoRegNet-A database of rhizobial transcription factors and regulatory networks. Journal of Biotechnology 155 (1). , 2011
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326518
Sequencing and comparative analysis of IncP-1 alpha antibiotic resistance plasmids reveal a highly conserved backbone and differences within accessory regions
Szczepanowski, Rafael, Sequencing and comparative analysis of IncP-1 alpha antibiotic resistance plasmids reveal a highly conserved backbone and differences within accessory regions. Journal of Biotechnology 155 (1). , 2011
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2329973
Consistency-based detection of potential tumor-specific deletions in matched normal/tumor genomes
Wittler, Roland, Consistency-based detection of potential tumor-specific deletions in matched normal/tumor genomes. 12 (Suppl. 9). , 2011
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2425344
Efficient Reconstruction of RC-Equivalent Strings
Cicalese, Ferdinando, Efficient Reconstruction of RC-Equivalent Strings. Combinatorial Algorithms : 21st International Workshop, IWOCA 2010, London, UK, July 26-28, 2010, Revised Selected Papers 6460 (). Berlin, Heidelberg, 2011
PUB | DOI
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2290032
Virulence Evolution of the Human Pathogen Neisseria meningitidis by Recombination in the Core and Accessory Genome
Joseph, Biju, Virulence Evolution of the Human Pathogen Neisseria meningitidis by Recombination in the Core and Accessory Genome. PLoS ONE 6 (4). , 2011
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093389
Whole-Genome Sequence of the Transformable Neisseria meningitidis Serogroup A Strain WUE2594
Schoen, Christoph, Whole-Genome Sequence of the Transformable Neisseria meningitidis Serogroup A Strain WUE2594. Journal of Bacteriology 193 (8). , 2011
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2289887
Complete Genome Analysis of Streptococcus gallolyticus subsp gallolyticus, an Emerging Pathogen of Infective Endocarditis
Hinse, D., Complete Genome Analysis of Streptococcus gallolyticus subsp gallolyticus, an Emerging Pathogen of Infective Endocarditis. 49 (). , 2011
PUB | WoS
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289952
Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming
Blom, Jochen, Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming. Bioinformatics 27 (10). , 2011
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Bielefelder E-Dissertation | PUB-ID: 2324501 OA
Bioinformatic approaches for genome finishing
Husemann, Peter, Bioinformatic approaches for genome finishing. (). Bielefeld, 2011
PUB | PDF
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2425310
Accurate statistics for local sequence alignment with position-dependent scoring by rare-event sampling
Wolfsheimer, Stefan, Accurate statistics for local sequence alignment with position-dependent scoring by rare-event sampling. BMC Bioinformatics 12 (1). , 2011
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2310613
Tractability results for the Consecutive-Ones Property with multiplicity
Chauve, Cedric, Tractability results for the Consecutive-Ones Property with multiplicity. Proceedings of CPM 2011 6661 (). , 2011
PUB | DOI | Download (ext.)
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289928
Comparative genomics of Lactobacillus
Kant, Ravi, Comparative genomics of Lactobacillus. Microbial Biotechnology 4 (3). , 2011
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2492807
Highly skewed T-cell receptor V-beta chain repertoire in the bone marrow is associated with response to immunosuppressive drug therapy in children with very severe aplastic anemia
Schuster, F R, Highly skewed T-cell receptor V-beta chain repertoire in the bone marrow is associated with response to immunosuppressive drug therapy in children with very severe aplastic anemia. Blood Cancer Journal 1 (3). , 2011
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