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412 Publikationen

2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900943
D. Langenkämper, et al., “Comparison of Acceleration Techniques for Selected Low-Level Bioinformatics Operations”, Frontiers in Genetics, vol. 7, 2016, : 5.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900421
L. Krause, et al., “Identification of the CIMP-like subtype and aberrant methylation of members of the chromosomal segregation and spindle assembly pathways in esophageal adenocarcinoma”, Carcinogenesis, vol. 37, 2016, pp. 356-365.
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2016 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2900111
L.A.B. Kowada, et al., “New Genome Similarity Measures based on Conserved Gene Adjacencies”, Research in Computational Molecular Biology. RECOMB 2016, M. Singh, ed., Lecture Notes in Bioinformatics (LNBI), vol. 9649, Springer, 2016, pp.204-224.
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2016 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2901740
N. Luhmann, et al., “The SCJ small parsimony problem for weighted gene adjacencies”, Proceedings 12th International Symposium, ISBRA 2016, Lecture Notes in Computer Science, vol. 9683, Springer International Publishing, 2016, pp.200-210.
PUB | DOI | Download (ext.) | arXiv
 
2016 | Konferenzband | Veröffentlicht | PUB-ID: 2912258
S. Hölldobler, ed., “Genfamilienfreier Genomvergleich”, LNI, vol. D-16, 2016, pp. 91-100.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911748
T. Krahn, et al., “Complete Genome Sequence ofAcinetobacter baumanniiCIP 70.10, a Susceptible Reference Strain for Comparative Genome Analyses”, Genome Announcements, vol. 3, 2015, pp. e00850-15.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2677844
M. Dias Vieira Braga and J. Stoye, “Sorting linear genomes with rearrangements and indels”, IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol. 12, 2015, pp. 500-506.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2726366
F.H. Viduani Martinez, et al., “On the family-free DCJ distance and similarity”, Algorithms for Molecular Biology, vol. 10, 2015, : 13.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2715682
P. Henning, et al., “Maui-VIA: a user-friendly software for visual identification, alignment, correction, and quantification of gas chromatography–mass spectrometry data”, Frontiers in Bioengineering and Biotechnology, vol. 2, 2015.
PUB | DOI | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2766708
C. Chen, et al., “Next-generation-sequencing of recurrent childhood high hyperdiploid acute lymphoblastic leukemia reveals mutations typically associated with high risk patients”, Leukemia research, 2015.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764612
R. Wittler, et al., “Repeat- and error-aware comparison of deletions”, Bioinformatics, vol. 31, 2015, pp. 2947-2954.
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2015 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2757497
G. Holley, R. Wittler, and J. Stoye, “Bloom Filter Trie - a data structure for pan-genome storage”, Proceedings of WABI 2015, LNBI, vol. 9289, 2015, pp.217-230.
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2015 | Bielefelder E-Dissertation | PUB-ID: 2786037
R. Hilker, Development of a read mapping analysis software and computational pan genome analysis of 20 Pseudomonas aeruginosa strains, Bielefeld: Bielefeld University, 2015.
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2015 | Konferenzband | Veröffentlicht | PUB-ID: 2780229
J. Meidanis and J. Stoye, eds., “Proceedings of the 13th Annual Research in Computational Molecular Biology (RECOMB) Satellite Workshop on Comparative Genomics: Bioinformatics”, BMC Bioinformatics, vol. 16, 2015.
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2015 | Konferenzband | Veröffentlicht | PUB-ID: 2780232
J. Meidanis and J. Stoye, eds., “Proceedings of the 13th Annual Research in Computational Molecular Biology (RECOMB) Satellite Workshop on Comparative Genomics: Genomics”, BMC Genomics, vol. 16, 2015.
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2014 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2684241
F.H. Viduani Martinez, et al., “On the family-free DCJ distance”, Algorithms in Bioinformatics. WABI 2014, D. Brown and B. Morgenstern, eds., Lecture Notes in Bioinformatics, vol. 8701, Berlin ; Heidelberg: Springer Verlag, 2014, pp.174-186.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2687033
D. Dörr, et al., “Identifying Gene Clusters by Discovering Common Intervals in Indeterminate Strings”, BMC Genomics, vol. 15, 2014, pp. S2.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2685362
M. Lechner, et al., “Orthology Detection Combining Clustering and Synteny for Very Large Datasets”, PLoS ONE, vol. 9, 2014, pp. e105015.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2689773
S. Jünemann, et al., “GABenchToB: A Genome Assembly Benchmark Tuned on Bacteria and Benchtop Sequencers”, PLOS ONE, vol. 9, 2014, pp. e107014.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Bielefelder E-Dissertation | PUB-ID: 2723541
C. Ander, Bioinformatic methods for the analysis and comparison of metagenomes and metatranscriptomes, Bielefeld: Universitätsbibliothek Bielefeld, 2014.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2674387
R. Hilker, et al., “ReadXplorer - Visualization and Analysis of Mapped Sequences”, Bioinformatics, vol. 30, 2014, pp. 2247-2254.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2665038
P. Schwientek, et al., “Improving the genome annotation of the acarbose producer Actinoplanes sp. SE50/110 by sequencing enriched 5'-ends of primary transcripts”, Journal of Biotechnology, vol. 190, 2014, pp. 85-95.
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2014 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2690122
N. Luhmann, et al., “Scaffolding of Ancient Contigs and Ancestral Reconstruction in a Phylogenetic Framework”, Proc. of BSB 2014, C. Sérgio, ed., LNBI, vol. 8826, Springer Verlag, 2014, pp.135-143.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2685988
T. Jakobi, et al., “Discovery of transcription start sites in the Chinese hamster genome by next-generation RNA sequencing”, Journal of Biotechnology, vol. 190, 2014, pp. 64-75.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Bielefelder E-Dissertation | PUB-ID: 2677466
N. Hoffmann, Computational methods for high-throughput metabolomics, Bielefeld: Universität Bielefeld, 2014.
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2014 | Lexikoneintrag | Veröffentlicht | PUB-ID: 2693552
J. Stoye, “Suffix Tree Construction”, Encyclopedia of Algorithms, M.-Y. Kao, ed., Springer Verlag, 2014.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2691246
E. Fueller, et al., “Genomic Inverse PCR for Exploration of Ligated Breakpoints (GIPFEL), a New Method to Detect Translocations in Leukemia”, PloS one, vol. 9, 2014, pp. 104419.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2643941
N. Hoffmann, et al., “BiPACE 2D – Graph-based multiple alignment for comprehensive two-dimensional gas chromatography–mass spectrometry”, Bioinformatics, vol. 30, 2014, pp. 988-995.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2693409
E. Fredrich, et al., “Metatranskriptomik der Mikrobiota aus der menschlichen Achselhöhle”, BIOspektrum, vol. 20, 2014, pp. 294-296.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2691732
B. Klippel, et al., “Carbohydrate-active enzymes identified by metagenomic analysis of deep-sea sediment bacteria”, Extremophiles, vol. 18, 2014, pp. 853-863.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2691279
V. Binder, et al., “A New Workflow for Whole-Genome Sequencing of Single Human Cells”, Human mutation, 2014.
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2014 | Bielefelder E-Dissertation | PUB-ID: 2673418
M. Mascher, POPSEQ Anchoring and ordering contig assemblies from next generation sequencing data by population sequencing, Bielefeld: Universität Bielefeld, 2014.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2665333
B. Henrich, et al., “Mycoplasma salivarium as a Dominant Coloniser of Fanconi Anaemia Associated Oral Carcinoma”, PLoS ONE, vol. 9, 2014, pp. e92297.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2611641
M. Dias Vieira Braga and J. Stoye, “Restricted DCJ-Indel Model Revisited”, Advances in Bioinformatics and Computational Biology. BSB 2013, J.C. Setubal and N.F. Almeida, eds., Lecture Notes in Bioinformatics, vol. 8213, Cham: Springer Verlag, 2013, pp.36-46.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2611630
E. Willing, et al., “On the Inversion-Indel Distance”, BMC Bioinformatics, vol. 14, 2013, : S3.
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2013 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2611648
M. Dias Vieira Braga, et al., “The Potential of Family-Free Genome Comparison”, Models and Algorithms for Genome Evolution, C. Chauve, N. El-Mabrouk, and E. Tannier, eds., Computational Biology Series, vol. 19, Springer Verlag, 2013, pp.287-307.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2575011
C. Ander, et al., “metaBEETL: high-throughput analysis of heterogeneous microbial populations from shotgun DNA sequences”, BMC Bioinformatics, vol. 14, 2013, pp. S2.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2555342
P. He, et al., “Genome sequence of the plant growth promoting strain Bacillus amyloliquefaciens subsp. plantarum B9601-Y2 and expression of mersacidin and other secondary metabolites”, Journal of biotechnology, vol. 164, 2013, pp. 281-291.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2641228
S. Jünemann, et al., “Corrigendum: Updating benchtop sequencing performance comparison”, Nature biotechnology, vol. 31, 2013, pp. 1148.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2492825
S. Reuther, et al., “In vitro-induced response patterns of antileukemic T cells: characterization by spectratyping and immunophenotyping”, Clinical and Experimental Medicine, vol. 13, 2013, pp. 29-48.
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2013 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2611643
A. Bergeron and J. Stoye, “The Genesis of the DCJ Formula”, Models and Algorithms for Genome Evolution, C. Chauve, N. El-Mabrouk, and E. Tannier, eds., Computational Biology Series, vol. 19, Springer Verlag, 2013, pp.63-81.
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2013 | Bielefelder E-Dissertation | PUB-ID: 2604883
J. Blom, Comparative genomics on gene and single nucleotide level, Bielefeld: Universitätsbibliothek, 2013.
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2013 | Bielefelder E-Dissertation | PUB-ID: 2594322
S.J. Janowski, VANESA - A bioinformatics software application for the modeling, visualization, analysis, and simulation of biological networks in systems biology applications, Bielefeld: Bielefeld University, 2013.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2575361
P. Krell, et al., “Next-generation-sequencing-spectratyping reveals public T-cell receptor repertoires in pediatric very severe aplastic anemia and identifies a beta chain CDR3 sequence associated with hepatitis-induced pathogenesis”, Haematologica, vol. 98, 2013, pp. 1388-1396.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Lexikoneintrag | Veröffentlicht | PUB-ID: 2577323
W. Gerlach and J. Stoye, “Taxonomic classification of metagenomic shotgun sequences with CARMA3”, Encyclopedia of Metagenomics, K.E. Nelson, ed., Springer Verlag, 2013.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2566922
S. Jünemann, et al., “Updating benchtop sequencing performance comparison”, Nature Biotechnology, vol. 31, 2013, pp. 294-296.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2625914
T. Bergmann, et al., “Categorization of two-photon microscopy images of human cartilage into states of osteoarthritis”, Osteoarthritis And Cartilage, vol. 21, 2013, pp. 1074-1082.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Konferenzband | Veröffentlicht | PUB-ID: 2616537
A. Darling and J. Stoye, eds., “Algorithms in Bioinformatics”, Lecture Notes in Bioinformatics, vol. 8126, 2013.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2611633
K. Jahn, et al., “Statistics for approximate gene clusters”, BMC Bioinformatics, vol. 14, 2013, pp. S14.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548236
P. Schwientek, et al., “Comparative RNA-sequencing of the acarbose producer Actinoplanes sp. SE50/110 cultivated in different growth media”, Journal of Biotechnology, vol. 167, 2013, pp. 166-177.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548286
V.M. Luque-Almagro, et al., “Draft whole genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344”, Environmental Microbiology, vol. 15, 2013, pp. 253-270.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2552092
R. Wittler, “Unraveling overlapping deletions by agglomerative clustering”, BMC Genomics, vol. 14, 2013, pp. S12.
PUB | Dateien verfügbar | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529309
S. Bolzan de Campos, et al., “Changes in Root Bacterial Communities Associated to Two Different Development Stages of Canola (*Brassica napus* L. var oleifera) Evaluated through Next-Generation Sequencing”, Microbial Ecology, vol. 65, 2013, pp. 593-601.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2659331
P. Feijão and J. Meidanis, “Extending the Algebraic Formalism for Genome Rearrangements to Include Linear Chromosomes”, IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol. 10, 2013, pp. 819-831.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529202
M. Zakrzewski, et al., “MetaSAMS - A novel software platform for taxonomic classification, functional annotation and comparative analysis of metagenome datasets”, Journal of Biotechnology, vol. 167, 2013, pp. 156-165.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2560353
D. Dörr, et al., “Stochastic errors vs. modeling errors in distance based phylogenetic reconstructions”, Algorithms for Molecular Biology, vol. 7, 2012, pp. 22.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2512642
D. Dörr, A. Thévenin, and J. Stoye, “Gene family assignment-free comparative genomics”, BMC Bioinformatics, vol. 13, 2012, pp. S3.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2498160
J. Schröder, et al., “Complete genome sequence, lifestyle, and multi-drug resistance of the human pathogen Corynebacterium resistens DSM 45100 isolated from blood samples of a leukemia patient”, BMC Genomics, vol. 13, 2012, : 141.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2517239
N. Hoffmann, et al., “Combining peak- and chromatogram-based retention time alignment algorithms for multiple chromatography-mass spectrometry datasets”, BMC Bioinformatics, vol. 13, 2012, pp. 21.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2512644
K. Jahn, H. Sudek, and J. Stoye, “Multiple genome comparison based on overlap regions of pairwise local alignments”, BMC Bioinformatics, vol. 13, 2012, pp. S7.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2513347
E. Trost, et al., “Pangenomic Study of Corynebacterium diphtheriae That Provides Insights into the Genomic Diversity of Pathogenic Isolates from Cases of Classical Diphtheria, Endocarditis, and Pneumonia”, Journal of bacteriology, vol. 194, 2012, pp. 3199-3215.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2490949
A. Zschuttig, et al., “Identification and Characterization of Microcin S, a New Antibacterial Peptide Produced by Probiotic Escherichia coli G3/10”, PLoS ONE, vol. 7, 2012, pp. e33351.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2709879
D. Doerr, et al., “Accelerating investigation of food-borne disease outbreaks using pro-active geospatial modeling of food supply chains”, HealthGIS '12: Proceedings of the First ACM SIGSPATIAL International Workshop on Use of GIS in Public Health, 2012, pp. 44-47.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2527519
J.M. Ruijter, et al., “Evaluation of qPCR curve analysis methods for reliable biomarker discovery: Bias, resolution, precision, and implications”, Methods. A companion to methods in enzymology (San Diego, Calif.), vol. 59, 2012, pp. 32-46.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2553484
T. Marschall, et al., “Probabilistic Arithmetic Automata and Their Applications”, Ieee/Acm Transactions On Computational Biology And Bioinformatics, vol. 9, 2012, pp. 1737-1750.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Bielefelder E-Dissertation | PUB-ID: 2468026
W. Gerlach, Taxonomic classification of metagenomic sequences, Bielefeld: Universität, 2012.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2553300
J. Manuch, et al., “Linearization of ancestral multichromosomal genomes”, BMC Bioinformatics, vol. 13, 2012.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2659289
F.C. Canavez, et al., “Genome Sequence and Assembly of Bos indicus”, Journal of Heredity, vol. 103, 2012, pp. 342-348.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2659385
C. Mira, et al., “A GRASP-based Heuristic for the Project Portfolio Selection Problem”, 2012 IEEE 15th International Conference on Computational Science and Engineering, 2012, pp.36-41.
PUB | DOI | WoS
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2553455
P. De Maayer, et al., “The large universal Pantoea plasmid LPP-1 plays a major role in biological and ecological diversification”, Bmc Genomics, vol. 13, 2012, pp. 625.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2486060
P. Schwientek, et al., “The complete genome sequence of the acarbose producer Actinoplanes sp. SE50/110”, BMC Genomics, vol. 13, 2012, : 112.
PUB | PDF | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2659280
P. Biller, P. Feijão, and J. Meidanis, “Rearrangement-Based Phylogeny Using the Single-Cut-or-Join Operation.”, IEEE/ACM transactions on computational biology and bioinformatics, vol. 10, 2012, pp. 122-134.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Konferenzband | Veröffentlicht | PUB-ID: 2510416
J. Kärkkäinen and J. Stoye, eds., “Combinatorial Pattern Matching”, Lecture Notes in Computer Science, vol. 7354, 2012.
PUB | DOI
 
2012 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2468382
N. Hoffmann and J. Stoye, “Generic Software Frameworks for GC-MS Based Metabolomics”, Metabolomics, U. Roessner, ed., InTech, 2012, pp.73-98.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2510984
R. Hilker, et al., “UniMoG - A unifying framework for genomic distance calculation and sorting based on DCJ”, Bioinformatics, vol. 28, 2012, pp. 2509-2511.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2542210
V.R. Parreira, et al., “Sequence of Two Plasmids from Clostridium perfringens Chicken Necrotic Enteritis Isolates and Comparison with C. perfringens Conjugative Plasmids”, PLoS ONE, vol. 7, 2012, pp. e49753.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Bielefelder E-Dissertation | PUB-ID: 2533144
M. Zakrzewski, Development of computational methods for the analysis of metagenome and metatranscriptome data, Bielefeld: Universität Bielefeld, 2012.
PUB | PDF
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2493233
P. Burcsi, et al., “ALGORITHMS FOR JUMBLED PATTERN MATCHING IN STRINGS”, International Journal of Foundations of Computer Science, vol. 23, 2012, pp. 357-374.
PUB | DOI | WoS | arXiv
 
2012 | Bielefelder E-Dissertation | PUB-ID: 2484427
P. Schwientek, Genomics and transcriptomics of the industrial acarbose producer Actinoplanes sp. SE50/110, Bielefeld: Universität Bielefeld, 2012.
PUB | PDF
 
2012 | Bielefelder E-Dissertation | PUB-ID: 2517237
A. Bunkowski, MCC-IMS data analysis using automated spectra processing and explorative visualisation methods, Bielefeld: Bielefeld University, 2012.
PUB | PDF
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526281
M. Zischka, et al., “Complete Genome Sequence of the Porcine Isolate Enterococcus faecalis D32”, Journal of Bacteriology, vol. 194, 2012, pp. 5490-5491.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526298
I. Maus, et al., “Complete Genome Sequence of the Hydrogenotrophic, Methanogenic Archaeon Methanoculleus bourgensis Strain MS2T, Isolated from a Sewage Sludge Digester”, Journal of Bacteriology, vol. 194, 2012, pp. 5487-5488.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526933
A.B. Dohrmann, et al., “Importance of rare taxa for bacterial diversity in the rhizosphere of Bt- and conventional maize varieties”, The ISME journal, vol. 7, 2012, pp. 37-49.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2517230
S. Jünemann, et al., “Bacterial Community Shift in Treated Periodontitis Patients Revealed by Ion Torrent 16S rRNA Gene Amplicon Sequencing”, PLoS ONE, vol. 7, 2012, pp. e41606.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2501312
K. Gorzolka, et al., “Metabolite fingerprinting of barley whole seeds, endosperms, and embryos during industrial malting”, Journal of Biotechnology, vol. 159, 2012, pp. 177-187.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2490286
U. Vogel, et al., “Ion Torrent PGM sequencing for genomic typing of Neisseria meningitidis for rapid determination of multiple layers of typing information”, Journal of clinical microbiology, vol. 50, 2012, pp. 1889-1894.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2396558
M. Dias Vieira Braga, et al., “On the weight of indels in genomic distances”, BMC Bioinformatics, vol. 12, 2011, : S13.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2396509
M. Dias Vieira Braga, et al., “Genomic distance under gene substitutions”, BMC Bioinformatics, vol. 12, 2011, : S8.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2091794
M. Dias Vieira Braga, E. Willing, and J. Stoye, “Double Cut and Join with Insertions and Deletions”, Journal of Computational Biology, vol. 18, 2011, pp. 1167-1184.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2091790
J. Kovac, et al., “Restricted DCJ Model. Rearrangement Problems with Chromosome Reincorporation”, Journal of Computational Biology, vol. 18, 2011, pp. 1231-1241.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2354746
P. Schwientek, et al., “Sequencing of high G + C microbial genomes using the ultrafast pyrosequencing technology”, Journal of Biotechnology, vol. 155, 2011, pp. 68-77.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2375634
J.F. Pothier, et al., “The ubiquitous plasmid pXap41 in the invasive phytopathogen Xanthomonas arboricola pv. pruni: complete sequence and comparative genomic analysis”, FEMS Microbiology Letters, vol. 323, 2011, pp. 52-60.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2404767
B. Niu, et al., “The Genome of the Plant Growth-Promoting Rhizobacterium Paenibacillus polymyxa M-1 Contains Nine Sites Dedicated to Nonribosomal Synthesis of Lipopeptides and Polyketides.”, Journal of Bacteriology, vol. 193, 2011, pp. 5862-5863.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2354731
D. Wibberg, et al., “Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid”, Journal of Biotechnology, vol. 155, 2011, pp. 50-62.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2659339
P. Feijão and J. Meidanis, “SCJ: A Breakpoint-Like Distance that Simplifies Several Rearrangement Problems”, IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol. 8, 2011, pp. 1318-1329.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326511
C. Rückert, et al., “Genome sequence of B. amyloliquefaciens type strain DSM7(T) reveals differences to plant-associated B. amyloliquefaciens FZB42”, Journal of Biotechnology, vol. 155, 2011, pp. 78-85.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2373808
J. Herold, C. Loyek, and T.W. Nattkemper, “Multivariate Image Mining”, Wiley Interdisciplinary Reviews: DATA MINING AND KNOWLEDGE DISCOVERY, vol. 1, 2011, pp. 2-13.
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2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2659373
C. Mira, et al., “The SinBiota 2.0 Biodiversity Information System”, 2011 IEEE Seventh International Conference on eScience, 2011, pp.142-149.
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2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2401639
G. Fici and Z. Lipták, “On prefix normal words”, Development in Language Theory. 15th International Conference (DLT 2011). Proceedings, G. Mauri and A. Leporati, eds., Lecture Notes in Computer Science, vol. 6795, Berlin ; Heidelberg: Springer, 2011, pp.228-238.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2401665
S. Hazelhurst and Z. Lipták, “KABOOM! A new suffix-array based algorithm for clustering expression data”, Bioinformatics, vol. 27, 2011, pp. 3348-3355.
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