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414 Publikationen

2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2499125
E. Baake and I. Herms, “Single-Crossover Dynamics: Finite versus Infinite Populations.”, Bull. Math. Biol., vol. 70, 2007, pp. 603-624.
PUB | DOI | WoS | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2499132
J. Baumbach, “CoryneRegNet 4.0 – A reference database for corynebacterial gene regulatory networks.”, BMC Bioinformatics, vol. 8, 2007, pp. 429.
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2007 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2499168
S.A. Carvalho Jr. de and S. Rahmann, “Improving the design of GeneChip arrays by combining placement and embedding”, Computational Systems Bioformatics Conference, 2007, pp.417-427.
PUB | PubMed | Europe PMC
 
2007 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2499442
C. Höner zu Siederdissen, S. Ragg, and S. Rahmann, “Discovering biomarkers for myocardial infarction from SELDI-TOF spectra”, Advances in Data Analysis. Proceedings of the 30th Annual Conference of the Gesellschaft für Klassifikation e.V., Studies in Classification, Data Analysis, and Knowledge Organization, Springer, 2007, pp.569-576.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1631047
C. Meisinger-Henschel, et al., “Genomic sequence of chorioallantois vaccinia virus Ankara, the ancestor of modified vaccinia virus Ankara”, JOURNAL OF GENERAL VIROLOGY, vol. 88, 2007, pp. 3249-3259.
PUB | DOI | WoS | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1918432
G. Didier, et al., “Character Sets of Strings”, Journal of Discrete Algorithms, vol. 5, 2007, pp. 330-340.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783712 OA
H.-M. Kaltenbach, A. Wilke, and S. Böcker, “SAMPI: protein identification with mass spectra alignments”, BMC Bioinformatics, vol. 8, 2007, pp. 102.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783754 OA
H. Neuweger, et al., “CoryneCenter: an online resource for the integrated analysis of corynebacterial genome and transcriptome data”, BMC Systems Biology, vol. 1, 2007, pp. 55.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1631327
S. Schneiker-Bekel, et al., “Complete genome sequence of the myxobacterium Sorangium cellulosum”, Nature Biotechnology, vol. 25, 2007, pp. 1281-1289.
PUB | DOI | WoS | PubMed | Europe PMC
 
2007 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1902192
N. Välimäki, et al., “Engineering a Compressed Suffix Tree Implementation”, Proceedings of 6th Workshop on Experimental Algorithms (WEA'07), Springer-Verlag, 2007, pp.217-228.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1594917
N. Välimäki, et al., “Compressed suffix tree - a basis for genome-scale sequence analysis”, BIOINFORMATICS, vol. 23, 2007, pp. 629-630.
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2007 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1594020
J. Baumbach, et al., “CoryneRegNet 3.0 - An interactive systems biology platform for the analysis of gene regulatory networks in corynebacteria and Escherichia coli”, JOURNAL OF BIOTECHNOLOGY, vol. 129, 2007, pp. 279-289.
PUB | DOI | WoS | PubMed | Europe PMC
 
2007 | Bielefelder E-Dissertation | PUB-ID: 2303359 OA
K.-B. Schürmann, Suffix arrays in theory and practice, Bielefeld (Germany): Bielefeld University, 2007.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1595253
K.-B. Schürmann and J. Stoye, “An incomplex algorithm for fast suffix array construction”, SOFTWARE-PRACTICE & EXPERIENCE, vol. 37, 2007, pp. 309-329.
PUB | DOI | WoS
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1630749
B. Lessmann, et al., “A method for linking computed image features to histological semantics in neuropathology”, Journal of Biomedical Informatics, vol. 40, 2007, pp. 631-641.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783345 OA
L. Krause, et al., “GISMO - gene identification using a support vector machine for ORF classification”, Nucleic Acids Research, vol. 35, 2007, pp. 540-549.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2007 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2018416
T.W. Nattkemper, A. Degenhard, and T. Twellmann, “Breas”, Cancer Imaging - Lung and breast carcinomas, M.A. Hayat, ed., vol. 1, Academic Press, 2007, pp.309-324.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1630781
A. Mellmann, et al., “Based Upon Repeat Pattern (BURP): an algorithm to characterize the long-term evolution of Staphylococcus aureus populations based on spa polymorphisms”, BMC MICROBIOLOGY, vol. 7, 2007, pp. 98.
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2006 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2499677
F. Cicalese and E. Laber, “On the Competitive Ratio of Evaluating Priced Functions”, Proc. 17th Annual ACM-SIAM Symposium on Discrete Algorithms (SODA 2006), 2006, pp.944-953.
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2006 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1596815
S. Rahmann and G.W. Klau, “Integer linear programs for discovering approximate gene clusters”, Algorithms in Bioinformatics. WABI 2006, P. Bücher and B.M.E. Moret, eds., Lecture Notes in Computer Science, vol. 4175, Berlin: Springer, 2006, pp.298-309.
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2006 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2374232
C. Varini, et al., “Visual Exploration of Pathology Images by a Discrete Wavelet Transform Preprocessed Locally Linear Embedding.”, Bildverarbeitung für die Medizin, H. Handels, et al., eds., Springer, 2006, pp.66-70.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2499511
S. Böcker, “Sequencing from Compomers: The Puzzle”, Theor. Comput. Syst., vol. 39, 2006, pp. 455-471.
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2006 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2499624
F. Cicalese and C. Deppe, “Q-ary Ulam-Rényi game with constrained lies”, General Theory of Information Transfer and Combinatorics, R. Ahlswede, et al., eds., Lecture notes in computer science, vol. 4123, Springer, 2006, pp.663-679.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2659363
P. Feijão, et al., “AMiGA: the arthropodan mitochondrial genomes accessible database”, Bioinformatics, vol. 22, 2006, pp. 902-903.
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2006 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2374254
B. Lessmann, et al., “Content Based Image Retrieval for Dynamic Time Series Data”, Proceedings of BVM, 2006, pp.61-65.
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2006 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2374494
W. Timm, et al., “Peak intensity prediction for pmf mass spectra using support vector regression”, Proc. of the 7th International FLINS Conference on Applied Artificial Intelligence, 2006, pp.565-572.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2499499
J. Baumbach, et al., “CoryneRegNet 2: An integrative bioinformatics approach for reconstruction and comparison of transcriptional regulatory networks in prokaryotes”, Journal of Integrative Bioinformatics, vol. 3, 2006, pp. 24.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1902179
W. Gerlach and R. Giegerich, “GUUGle: a utility for fast exact matching under RNA complementary rules including G-U base pairing.”, Bioinformatics, vol. 22, 2006, pp. 762-764.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2499664
F. Cicalese, L. Gargano, and U. Vaccaro, “A Note on Approximation of Uniform Distributions from Variable-to-Fixed Length Codes”, IEEE Transactions on Information Theory, vol. 52, 2006, pp. 3772-3777.
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2006 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2499515
S. Böcker, et al., “Decomposing metabolomic isotope patterns”, Proc. WABI, vol. 4175, 2006, pp.12-23.
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2006 | Bielefelder E-Dissertation | PUB-ID: 2305885 OA
L. Taher, Computational methods for splice site prediction, Bielefeld (Germany): Bielefeld University, 2006.
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2006 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2499562
S.A. Carvalho Jr. de and S. Rahmann, “Improving the layout of oligonucleotide microarrays: Pivot Partitioning”, Proc. 6th Workshop of Algorithms in Bioinformatics, vol. 4175, 2006, pp.321-332.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1599943
M. Sammeth, et al., “Panta rhei (QAlign2): an open graphical environment for sequence analysis”, BIOINFORMATICS, vol. 22, 2006, pp. 889-890.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1599570
K.R. Rasmussen, J. Stoye, and E.W. Myers, “Efficient q-gram filters for finding all epsilon-matches over a given length”, JOURNAL OF COMPUTATIONAL BIOLOGY, vol. 13, 2006, pp. 296-308.
PUB | DOI | WoS | PubMed | Europe PMC
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1599574
A. Bergeron, J. Mixtacki, and J. Stoye, “On sorting by translocations”, JOURNAL OF COMPUTATIONAL BIOLOGY, vol. 13, 2006, pp. 567-578.
PUB | DOI | WoS | PubMed | Europe PMC
 
2006 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1596811
A. Bergeron, J. Mixtacki, and J. Stoye, “A Unifying View of Genome Rearrangements”, Proc. of WABI 2006, LNBI, vol. 4175, SPRINGER-VERLAG BERLIN, 2006, pp.163-173.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1597213
M. Sammeth and J. Stoye, “Comparing tandem repeats with duplications and excisions of variable degree”, IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol. 3, 2006, pp. 395-407.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1597313
A. Bergeron and J. Stoye, “On the similarity of sets of permutations and its applications to genome comparison”, JOURNAL OF COMPUTATIONAL BIOLOGY, vol. 13, 2006, pp. 1340-1354.
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2006 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 1918946
J. Stoye, “Index Structures in Biological Sequence Analysis: From Simplicity to Complexity and Back”, Presented at the JOBIM 2006, Bordeaux, France, 2006.
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2006 | Report | PUB-ID: 1970464 OA
C. Chauve, et al., On Common Intervals with Errors, Forschungsberichte, Bielefeld: Technische Fakultät der Universität Bielefeld, 2006.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773632 OA
J. Baumbach, et al., “CoryneRegNet: An ontology-based data warehouse of corynebacterial transcription factors and regulatory networks”, BMC Genomics, vol. 7, 2006, pp. 24.
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2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1631957
L. Krause, et al., “Finding novel genes in bacterial communities isolated from the environment”, BIOINFORMATICS, vol. 22, 2006, pp. e281-e289.
PUB | DOI | WoS | PubMed | Europe PMC
 
2005 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2309191
S. Rahmann, “Algorithmen für das Design von DNA-Microarrays”, Ausgezeichnete Informatikdissertationen 2004, D. Wagner, ed., Lecture Notes in Informatics, vol. 5, Bonn: Ges. für Informatik , 2005, pp.145-154.
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773695 OA
S. Röpcke, et al., “T-Reg Comparator: an analysis tool for the comparison of position weight matrices”, Nucleic Acids Research, vol. 33, 2005, pp. W438-W441.
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2005 | Bielefelder E-Dissertation | PUB-ID: 2302056 OA
Z. Lipták, Strings in proteomics and transcriptomics : algorithmic and combinatorial questions in mass spectrometry and EST clustering, Bielefeld (Germany): Bielefeld University, 2005.
PUB | Datei
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1601941
J. Grossmann, et al., “AUDENS: A tool for automated peptide de novo sequencing”, Journal of Proteome Research, vol. 4, 2005, pp. 1768-1774.
PUB | DOI | WoS | PubMed | Europe PMC
 
2005 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1603101
F. Cicalese, P. Damaschke, and U. Vaccaro, “Optimal group testing strategies with interval queries and their application to splice site detection”, Computational Science – ICCS 2005. 5th International Conference, Atlanta, GA, USA, May 22-25, 2005. Proceedings, Part II, V.S. Sunderam, et al., eds., Lecture Notes in Computer Science, vol. 3515, Berlin: Springer, 2005, pp.1029-1037.
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2005 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1601085
F. Cicalese and E.S. Laber, “An optimal algorithm for querying priced information: Monotone Boolean functions and game trees”, Algorithms – ESA 2005. 13th Annual European Symposium, Palma de Mallorca, Spain, October 3-6, 2005. Proceedings, G. Stølting Brodal and S. Leonardi, eds., Lecture Notes in Computer Science, vol. 3669, Berlin: Springer, 2005, pp.664-676.
PUB | DOI | WoS
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2308882
F. Cicalese and C. Deppe, “Q-ary Ulam-Rényi game with constrained lies”, Electronic Notes in Discrete Mathematics, vol. 21, 2005, pp. 255-261.
PUB | DOI
 
2005 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2374546
A. Saalbach, et al., “A hyperbolic topographic mapping for proximity data”, Proc. of the IASTED International Conference of Artificial Intelligence and Applications, vol. 2005, 2005, pp.106-111.
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2005 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2374666
T. Twellmann, et al., “An Adaptive Colour Scale for Comparison of Pseudo Colouring Techniques for DCE-MRI Data”, Presented at the Workshop für Bildverarbeiteung für die Medzin, Workshop für Bildverarbeituing für die Medizin 2005, 2005.
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2005 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2500567
V. Mäkinen and G. Navarro, “Succinct Suffix Arrays based on Run-Length Encoding”, Proc. 16th Annual Symposium on Combinatorial Pattern Matching (CPM 2005), vol. 3537, 2005, pp.45-56.
PUB | DOI
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2374187
A. Saalbach, et al., “Image fusion based on topographic mappings using the hyperbolic space”, Information Visualization, vol. 4, 2005, pp. 266-275.
PUB | DOI
 
2005 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2500564
V. Mäkinen, “Peak Alignment using Restricted Edit Distances”, Proc. 6th International Symposium on Computational Biology and Genome Informatics (CBGI 2005), 2005.
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2005 | Report | PUB-ID: 1970470 OA
M. Sammeth and J. Stoye, Alignment of Tandem Repeats with Excision, Duplication, Substitution and Indels (EDSI), Forschungsberichte, Bielefeld: Technische Fakultät der Universität Bielefeld, 2005.
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2005 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2308909
F. Cicalese and E.S. Laber, “A new strategy for querying priced information.”, Proc. 37th Annual ACM Symposium on Theory of Computing (STOC 2005), 2005, pp.674-683.
PUB
 
2005 | Bielefelder E-Dissertation | PUB-ID: 2306287 OA
T. Schmidt, Efficient algorithms for gene cluster detection in prokaryotic genomes, Bielefeld (Germany): Bielefeld University, 2005.
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2005 | Report | Veröffentlicht | PUB-ID: 2308848
S. Carvalho Jr. de and S. Rahmann, Searching for the Shortest Common Supersequence, Technische Fakultät der Universität Bielefeld, Abteilung Informationstechnik, 2005.
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2005 | Report | Veröffentlicht | PUB-ID: 2308862
F. Cicalese, et al., Overlaps Help: Improved Bounds for Group Testing with Interval Queries, Technische Fakultät der Universität Bielefeld, Abteilung Informationstechnik, 2005.
PUB | DOI
 
2005 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2308867
F. Cicalese, et al., “Overlaps Help: Improved Bounds for Group Testing with Interval Queries”, Proc. 11th Annual International Conference on Computing and Combinatorics (COCOON 2005), Lecture Notes in Computer Science, 3595, 2005, pp.935-944.
PUB | DOI
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2308944
M. Ehrich, S. Böcker, and D. Boom van den, “Multiplexed discovery of sequence polymorphisms using base-specific cleavage and MALDI-TOF MS”, Nucleic Acids Res., vol. 33, 2005, pp. e38.
PUB | DOI | WoS | PubMed | Europe PMC
 
2005 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919012
K.-B. Schürmann and J. Stoye, “An Incomplex Algorithm for Fast Suffix Array Construction”, Proc. of ALENEX/ANALCO 2005, 2005, pp.77-85.
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2005 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 1918824
A. Bergeron, J. Mixtacki, and J. Stoye, “Chapter 10: The Inversion Distance Problem”, Mathematics of Evolution and Phylogeny, O. Gascuel, ed., Oxford University Press, 2005, pp.262-290.
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2005 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1603220
A. Bergeron, J. Mixtacki, and J. Stoye, “On Sorting by Translocations”, Proc. of RECOMB 2005, LNBI, vol. 3500, SPRINGER-VERLAG BERLIN, 2005, pp.615-629.
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1775168 OA
A. Krause, J. Stoye, and M. Vingron, “Large scale hierarchical clustering of protein sequences”, BMC Bioinformatics, vol. 6, 2005, pp. 15.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773302 OA
D. Bartels, et al., “BACCardI - a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison”, Bioinformatics, vol. 21, 2005, pp. 853-859.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2005 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1602793
S. Böcker and H.M. Kaltenbach, “Mass spectra alignments and their significance”, COMBINATORIAL PATTERN MATCHING, PROCEEDINGS, vol. 3537, SPRINGER-VERLAG BERLIN, 2005, pp.429-441.
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2005 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1918947
S. Böcker and J. Stoye, “Informatische Methoden zur Protein-Identifikation”, LaborPraxis, vol. 29, 2005, pp. 24-26.
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2005 | Bielefelder E-Dissertation | PUB-ID: 2301827 OA
M. Sammeth, Integrated multiple sequence alignment, Bielefeld (Germany): Bielefeld University, 2005.
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2005 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1601348
C. Bannert and J. Stoye, “Protein Annotation by Secondary Structure Based Alignments (PASSTA)”, Proc. of CompLife 2005, LNBI, vol. 3695, Springer-Verlag, 2005, pp.79-90.
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2005 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1601361
M. Sammeth, et al., “Alignment of Tandem Repeats with Excision, Duplication, Substitution and Indels (EDSI)”, Proc. of WABI 2005, LNBI, vol. 3692, SPRINGER-VERLAG BERLIN, 2005, pp.276-290.
PUB | DOI | WoS
 
2005 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1603216
K.R. Rasmussen, J. Stoye, and E.W. Myers, “Efficient q-Gram Filters for Finding All ε-Matches Over a Given Length”, Proc. of RECOMB 2005, LNBI, vol. 3500, SPRINGER-VERLAG BERLIN, 2005, pp.189-203.
PUB | DOI | WoS
 
2005 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919026
K.-B. Schürmann and J. Stoye, “Counting Suffix Arrays and Strings”, Proc. of SPIRE 2005, LNCS, vol. 3772, 2005, pp.55-66.
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2005 | Report | PUB-ID: 1970472 OA
K.-B. Schürmann and J. Stoye, Counting Suffix Arrays and Strings, Forschungsberichte, Bielefeld: Technische Fakultät der Universität Bielefeld, 2005.
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2004 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2309420
J. Zimmermann, Z. Lipták, and S. Hazelhurst, “A Method for Evaluating the Quality of String Dissimilarity Measures and Clustering Algorithms for EST Clustering.”, Proc. BIBE, 2004, pp.301-309.
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2004 | Konferenzband | Veröffentlicht | PUB-ID: 1918823
R. Giegerich and J. Stoye, eds., “Proceedings of the German Conference on Bioinformatics, GCB 2004”, Lecture Notes in Informatics, vol. P-53, 2004.
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2004 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1606286
M. Michael, C. Dieterich, and J. Stoye, “Suboptimal Local Alignments across Multiple Scoring Schemes”, Proc. of WABI 2004, LNBI, vol. 3240, SPRINGER-VERLAG BERLIN, 2004, pp.99-110.
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2004 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1607260
T. Schmidt and J. Stoye, “Quadratic Time Algorithms for Finding Common Intervals in Two and More Sequences”, Proc. of CPM 2004, LNCS, vol. 3109, 2004, pp.347-358.
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773554 OA
D.A. Pollard, et al., “Correction: Benchmarking tools for the alignment of functional noncoding DNA”, BMC Bioinformatics, vol. 5, 2004, pp. 73.
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773560 OA
M. Cieliebak, et al., “Algorithmic complexity of protein identification: combinatorics of weighted strings”, Discrete Applied Mathematics, vol. 137, 2004, pp. 27-46.
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773312 OA
D.A. Pollard, et al., “Benchmarking tools for the alignment of functional noncoding DNA”, BMC Bioinformatics, vol. 5, 2004, pp. 6.
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773569 OA
D. Gusfield and J. Stoye, “Linear time algorithms for finding and representing all the tandem repeats in a string”, Journal of computer and system sciences, vol. 69, 2004, pp. 525-546.
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2004 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773761 OA
T. Müller, et al., “Accurate and robust phylogeny estimation based on profile distances: a study of the Chlorophyceae (Chlorophyta)”, BMC Evolutionary Biology, vol. 4, 2004, pp. 20.
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2004 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1607263
A. Bergeron, J. Mixtacki, and J. Stoye, “Reversal Distance without Hurdles and Fortresses”, Proc. of CPM 2004, LNCS, vol. 3109, SPRINGER-VERLAG BERLIN, 2004, pp.388-399.
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2003 | Report | PUB-ID: 1970475 OA
K.-B. Schürmann and J. Stoye, Suffix Tree Construction and Storage with Limited Main Memory, Forschungsberichte, Bielefeld: Technische Fakultät der Universität Bielefeld, 2003.
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1612664
S. Heber and J. Stoye, “The European Conference on Computational Biology”, Drug Discovery Today, vol. 8, 2003, pp. 113-114.
PUB | DOI | WoS | PubMed | Europe PMC
 
2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1918949
R. Giegerich and J. Stoye, “Finden, fast ohne zu suchen: Indexstrukturen in der Bioinformatik”, Forschung an der Universität Bielefeld, vol. 26, 2003, pp. 63-68.
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2003 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919005
C. Bannert and J. Stoye, “Evaluation of the Jumping Alignment Algorithm with Artificial and Biological Data”, Proc. of GCB 2003, 2003, pp.21-25.
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1610397 OA
R. Giegerich, S. Kurtz, and J. Stoye, “Efficient implementation of lazy suffix trees”, SOFTWARE-PRACTICE & EXPERIENCE, vol. 33, 2003, pp. 1035-1049.
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1609403 OA
M. Sammeth, B. Morgenstern, and J. Stoye, “Divide-and-conquer multiple alignment with segment-based constraints”, BIOINFORMATICS, vol. 19, 2003, pp. ii189-ii195.
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2003 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1610433
A. Bergeron and J. Stoye, “On the similarity of sets of permutations and its applications to genome comparison”, Proc. of COCOON 2003, LNCS, vol. 2697, 2003, pp.68-79.
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2003 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1610503 OA
M. Sammeth, et al., “QAlign: quality-based multiple alignments with dynamic phylogenetic analysis”, BIOINFORMATICS, vol. 19, 2003, pp. 1592-1593.
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2003 | Report | PUB-ID: 1970477 OA
A. Bergeron and J. Stoye, On the Similarity of Sets of Permutations and its Applications to Genome Comparison, Forschungsberichte, Bielefeld: Technische Fakultät der Universität Bielefeld, 2003.
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2003 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2017545 OA
T.W. Nattkemper, et al., “Look & Listen: Sonification and Visualization of Multiparameter Micrographs”, Engineering in Medicine and Biology Society. Proceedings of the 25th Annual International Conference of the IEEE, vol. 2, Cancun, Mexico: IEEE, 2003, pp.1311-1314.
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2002 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 1918951
J. Stoye, “Index Structures for Large Sequence Data: Suffix Trees and Affix Trees”, Lecture Notes in Informatics, S. Schubert, B. Reusch, and N. Jesse, eds., vol. P-20, 2002, pp.67-67.
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2002 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919000
M. Cieliebak, et al., “Algorithmic Complexity of Protein Identification: Searching in Weighted Strings”, Proc. of IFIP TCS 2002, 2002, pp.143-156.
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2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773578 OA
R. Spang, M. Rehmsmeier, and J. Stoye, “A novel approach to remote homology detection: jumping alignments”, Journal of Computational Biology, vol. 9, 2002, pp. 747-760.
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2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773332 OA
J. Stoye and D. Gusfield, “Simple and flexible detection of contiguous repeats using a suffix tree”, Theoretical Computer Science, vol. 270, 2002, pp. 843-856.
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2002 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1773329 OA
A. Bergeron, S. Heber, and J. Stoye, “Common intervals and sorting by reversals: a marriage of necessity”, Bioinformatics, vol. 18, 2002, pp. S54-S63.
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2002 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1918995
S. Heber, et al., “Resampling Methods in Physical Mapping”, Proc. of GfKl 2000, 2002, pp.437-444.
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