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421 Publikationen

2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589531
Albaum, S., Neuweger, H., Fraenzel, B., Lange, S., Mertens, D., Troetschel, C., Wolters, D., et al. (2009). Qupe-a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments. Bioinformatics, 25(23), 3128-3134. doi:10.1093/bioinformatics/btp568
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1590204
Brudno, M., Medvedev, P., Stoye, J., & De La Vega, F. M. (2009). A report on the 2009 SIG on short read sequencing and algorithms (Short-SIG). BIOINFORMATICS, 25(21), 2863-2864. doi:10.1093/bioinformatics/btp525
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588783
Purser, A., Bergmann, M., Ontrup, J., & Nattkemper, T. W. (2009). Use of machine-learning algorithms for the automated detection of cold-water coral habitats: a pilot study. Marine Ecology Progress Series, 397, 241-251. doi:10.3354/meps08154
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1898105
Böcker, S., Jahn, K., Mixtacki, J., & Stoye, J. (2009). Computation of Median Gene Clusters. Journal of Computational Biology, 16(8), 1085-1099. doi:10.1089/cmb.2009.0098
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1591319
Hoffmann, N., & Stoye, J. (2009). ChromA: signal-based retention time alignment for chromatography-mass spectrometry data. Bioinformatics, 25(16), 2080-2081. doi:10.1093/bioinformatics/btp343
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588760 OA
Dias Vieira Braga, M., Gautier, C., & Sagot, M. - F. (2009). An asymmetric approach to preserve common intervals while sorting by reversals. Algorithms for Molecular Biology, 4(1), 16. doi:10.1186/1748-7188-4-16
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2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919209
Medvedev, P., & Stoye, J. (2009). Rearrangement Models and Single-Cut Operations. Comparative Genomics : International Workshop, RECOMB-CG 2009, Budapest, Hungary, September 27-29, 2009. Proceedings, 5817, 84-97. doi:10.1007/978-3-642-04744-2_8
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2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018440
Schoening, T., Ehnert, N., Ontrup, J., & Nattkemper, T. W. (2009). BIIGLE Tools - A Web 2.0 Approach for Visual Bioimage Database Mining. IV 09 - Intl. Conference on Information Visualization. doi:10.1109/iv.2009.71
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2009 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 1918945
Stoye, J. (2009). Computational Short Read Metagenomics. Presented at the JOBIM 2009, Nantes, France
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634447
Bekel, T., Henckel, K., Küster, H., Meyer, F., Mittard-Runte, V., Neuweger, H., Paarmann, D., et al. (2009). The Sequence Analysis and Management System - SAMS-2.0: Data management and sequence analysis adapted to changing requirements from traditional sanger sequencing to ultrafast sequencing technologies. Journal of Biotechnology, 140(1-2), 3-12. doi:10.1016/j.jbiotec.2009.01.006
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634615
Zeschnigk, M., Martin, M., Betzl, G., Kalbe, A., Sirsch, C., Buiting, K., Gross, S., et al. (2009). Massive parallel bisulfite sequencing of CG-rich DNA fragments reveals that methylation of many X-chromosomal CpG islands in female blood DNA is incomplete. HUMAN MOLECULAR GENETICS, 18(8), 1439-1448. doi:10.1093/hmg/ddp054
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2427252
Alekseev, V. E., Lozin, V. V., Malyshev, D., & Milanič, M. (2008). The Maximum Independent Set Problem in Planar Graphs. Proc. MFCS 2008, 96-107. doi:10.1007/978-3-540-85238-4_7
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2008 | Bielefelder E-Dissertation | PUB-ID: 2306324 OA
Baumbach, J. (2008). CoryneRegNet : a reference database and analysis platform for corynebacterial gene regulatory networks. Bielefeld (Germany): Bielefeld University.
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2008 | Bielefelder E-Dissertation | PUB-ID: 2302950 OA
Zakotnik, J. (2008). The double cut and join operation and its applications to genome rearrangements. Bielefeld (Germany): Bielefeld University.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2659345
Oliveira, M. T., Barau, J. G., Junqueira, A. C. M., Feijão, P., Rosa, A. C. da, Abreu, C. F., Azeredo-Espin, A. M. L., et al. (2008). Structure and evolution of the mitochondrial genomes of Haematobia irritans and Stomoxys calcitrans: The Muscidae (Diptera: Calyptratae) perspective. Molecular Phylogenetics and Evolution, 48(3), 850-857. doi:10.1016/j.ympev.2008.05.022
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2308903
Cicalese, F., & Laber, E. S. (2008). Function Evaluation Via Linear Programming in the Priced Information Model. Proc. ICALP 2008, 173-185. doi:10.1007/978-3-540-70575-8_15
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2008 | Report | Veröffentlicht | PUB-ID: 2308927 OA
Cicalese, F., & Milanivc, M. (2008). On Parsimony Haplotyping (Forschungsberichte der Technischen Fakultät, Abteilung Informationstechnik / Universität Bielefeld). Bielefeld: Universität Bielefeld, Technische Fakultät.
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2308974
Fritzilas, E., Rios-Solis, Y. A., & Rahmann, S. (2008). Structural Identifiability in Low-Rank Matrix Factorization. In X. Hu & J. Wang (Eds.), Lecture Notes in Computer Science, 5092. Computing and Combinatorics 14th Annual International Conference, COCOON 2008 Dalian, China, June 27-29, 2008 Proceedings (pp. 140-148). Berlin u.a.: Springer. doi:10.1007/978-3-540-69733-6_15
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2008 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2499103
Milanivc, M., & Monnot, J. (2008). The Complexity of the Exact Weighted Independent Set Problem. Combinatorial optimization and theoretical computer science: interfaces and perspectives : 30th anniversary of the LAMSADE, 393-432. doi:10.1002/9780470611098.ch16
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2499108
Mixtacki, J. (2008). Genome Halving under DCJ Revisited. In X. Hu & J. Wang (Eds.), Lecture Notes in Computer Science, 5092. Computing and Combinatorics. 14th Annual International Conference, COCOON 2008 Dalian, China, June 27-29, 2008 Proceedings (pp. 276-286).
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919198
Quitzau, J. A. A., & Stoye, J. (2008). Detecting Repeat Families in Incompletely Sequenced Genomes. Proc. of WABI 2008, 5251, 342-353. doi:10.1007/978-3-540-87361-7_29
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2008 | Report | Veröffentlicht | PUB-ID: 2499065
Cicalese, F., & Milanic, M. (2008). Computing with Priced Information: game trees and the value dependent cost model. Technische Fakultät, Universität Bielefeld.
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2499072
Herms, I., & Rahmann, S. (2008). Computing Alignment Seed Sensitivity with Probabilistic Arithmetic Automata. In K. A. Crandall & J. Lagergren (Eds.), Lecture Notes in Computer Science, 5251. Algorithms in Bioinformatics: 8th International Workshop, WABI 2008, Karlsruhe, Germany, September 15-19, 2008. Proceedings (pp. 318-329). Berlin u.a.: Springer. doi:10.1007/978-3-540-87361-7_27
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2498846
Boyar, J., & Medvedev, P. (2008). The relative worst order ratio applied to seat reservation. ACM Transactions on Algorithms, 4(4), 1-22. doi:10.1145/1383369.1383379
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2008 | Report | Veröffentlicht | PUB-ID: 2308930 OA
Cicalese, F., & Milanivc, M. (2008). Computing with Priced Information: game trees and the value dependent cost model (Forschungsberichte der Technischen Fakultät, Abteilung Informationstechnik / Universität Bielefeld). Bielefeld: Universität Bielefeld, Technische Fakultät.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2499098
Lozin, V. V., & Milanic, M. (2008). A polynomial algorithm to find an independent set of maximum weight in a fork-free graph. J. Discr. Alg., 6(4), 595-604. doi:10.1016/j.jda.2008.04.001
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2008 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2499120
Rahmann, S., & Klau, G. W. (2008). Integer Linear Programming Techniques for Discovering Approximate Gene Clusters. In I. I. Mǎndoiu & A. Zelikovsky (Eds.), Bioinformatics Algorithms: Techniques and Applications (pp. 203-222). Wiley Interscience. doi:10.1002/9780470253441.ch9
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2008 | Report | PUB-ID: 1970459 OA
Quitzau, J. A. A., & Stoye, J. (2008). A space efficient representation for sparse de Bruijn subgraphs (Forschungsberichte der Technischen Fakultät, Abteilung Informationstechnik / Universität Bielefeld). Bielefeld: Technische Fakultät der Universität Bielefeld.
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2008 | Report | PUB-ID: 1970461 OA
Ejaz, T., Rahmann, S., & Stoye, J. (2008). Online Abelian Pattern Matching (Forschungsberichte der Technischen Fakultät, Abteilung Informationstechnik / Universität Bielefeld). Bielefeld: Technische Fakultät der Universität Bielefeld.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1636699
Neuweger, H., Albaum, S., Dondrup, M., Persicke, M., Watt, T., Niehaus, K., Stoye, J., et al. (2008). MeltDB: a software platform for the analysis and integration of metabolomics experiment data. Bioinformatics, 24(23), 2726-2732. doi:10.1093/bioinformatics/btn452
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2008 | Bielefelder E-Dissertation | PUB-ID: 2305571 OA
Bannert, C. (2008). Flexible protein annotation with sequence- and secondary structure information. Bielefeld (Germany): Bielefeld University.
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2008 | Lexikoneintrag | Veröffentlicht | PUB-ID: 1918834
Stoye, J. (2008). Suffix Tree Construction in RAM (1997; Farach-Colton). In M. - Y. Kao (Ed.), Encyclopedia of Algorithms (pp. 925-928). Springer Verlag. doi:10.1007/978-0-387-30162-4_414
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919192
Böcker, S., Jahn, K., Mixtacki, J., & Stoye, J. (2008). Computation of Median Gene Clusters. Proc. of RECOMB 2008, 4955, 331-345. doi:10.1007/978-3-540-78839-3_28
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919200
Bergeron, A., Mixtacki, J., & Stoye, J. (2008). On Computing the Breakpoint Reuse Rate in Rearrangement Scenarios. Proc. of Recomb-CG 2008, 5267, 226-240. doi:10.1007/978-3-540-87989-3_17
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018405
Loyek, C., Woermann, F. G., & Nattkemper, T. W. (2008). Detection of Focal Cortical Dysplasia in MRI Using Textural Features. Proceedings of BVM 2008, 432-436. Berlin, Heidelberg: Springer Verlag. doi:10.1007/978-3-540-78640-5_87
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1636280 OA
Timm, W., Scherbart, A., Boecker, S., Kohlbacher, O., & Nattkemper, T. W. (2008). Peak intensity prediction in MALDI-TOF mass spectrometry: A machine learning study to support quantitative proteomics. BMC Bioinformatics, 9(1), 443. doi:10.1186/1471-2105-9-443
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592257
Schoen, C., Blom, J., Claus, H., Schramm-Glueck, A., Brandt, P., Mueller, T., Goesmann, A., et al. (2008). Whole-genome comparison of disease and carriage strains provides insights into virulence evolution in Neisseria meningitidis. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 105(9), 3473-3478. doi:10.1073/pnas.0800151105
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592737
Boecker, S., Lipták, Z., Martin, M., Pervukhin, A., & Sudek, H. (2008). DECOMP - from interpreting mass spectrometry peaks to solving the money changing problem. BIOINFORMATICS, 24(4), 591-593. doi:10.1093/bioinformatics/btm631
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1587304
Hazelhurst, S., Hide, W., Lipták, Z., Nogueira, R., & Starfield, R. (2008). An overview of the wcd EST clustering tool. BIOINFORMATICS, 24(13), 1542-1546. doi:10.1093/bioinformatics/btn203
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1587078
Schürmann, K. - B., & Stoye, J. (2008). Counting suffix arrays and strings. THEORETICAL COMPUTER SCIENCE, 395(2-3), 220-234. doi:10.1016/j.tcs.2008.01.011
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1586009
Krause, L., Diaz, N. N., Edwards, R. A., Gartemann, K. - H., Krömeke, H., Neuweger, H., Pühler, A., et al. (2008). Taxonomic composition and gene content of a methane-producing microbial community isolated from a biogas reactor. JOURNAL OF BIOTECHNOLOGY, 136(1-2), 91-101. doi:10.1016/j.jbiotec.2008.06.003
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1587052
Martin, C., Diaz, N. N., Ontrup, J., & Nattkemper, T. W. (2008). Hyperbolic SOM-based clustering of DNA fragment features for taxonomic visualization and classification. Bioinformatics, 24(14), 1568-1574. doi:10.1093/bioinformatics/btn257
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1586785 OA
Oehm, S., Gilbert, D., Tauch, A., Stoye, J., & Goesmann, A. (2008). Comparative Pathway Analyzer - a web server for comparative analysis, clustering and visualization of metabolic networks in multiple organisms. NUCLEIC ACIDS RESEARCH, 36(Web Server), W433-W437. doi:10.1093/nar/gkn284
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585939
Tauch, A., Schneider, J., Szczepanowski, R., Tilker, A., Viehöver, P., Gartemann, K. - H., Arnold, W., et al. (2008). Ultrafast pyrosequencing of Corynebacterium kroppenstedtii DSM44385 revealed insights into the physiology of a lipophilic corynebacterium that lacks mycolic acids. Journal of Biotechnology, 136(1-2), 22-30. doi:10.1016/j.jbiotec.2008.03.004
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783364 OA
Krause, L., Diaz, N. N., Goesmann, A., Kelley, S., Nattkemper, T. W., Rohwer, F., Edwards, R. A., et al. (2008). Phylogenetic classification of short environmental DNA fragments. Nucleic Acids Research, 36(7), 2230-2239. doi:10.1093/nar/gkn038
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919195
Bergeron, A., Mixtacki, J., & Stoye, J. (2008). HP Distance via Double Cut and Join Distance. Combinatorial Pattern Matching. 19th Annual Symposium, CPM 2008, Pisa, Italy, June 18-20, 2008 Proceedings, 56-68. doi:10.1007/978-3-540-69068-9_8
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018409
Martin, C., & Nattkemper, T. W. (2008). A Tree Index to Support Clustering Based Exploratory Data Analysis. Bioinformatics Research and Development : Second International Conference, BIRD 2008 Vienna, Austria, July 7-9, 2008 Proceedings, 13, 1-15. doi:10.1007/978-3-540-70600-7_1
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018435
Scherbart, A., Timm, W., Böcker, S., & Nattkemper, T. W. (2008). Improved Mass Spectrometry Peak Intensity Prediction by Adaptive Feature Weighting. International Conference on Neural Information Processing. doi:10.1007/978-3-642-02490-0_63
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018381
Albaum, S., Neuweger, H., Lange, S., Mertens, D., Runte, K., Kalinowski, J., Nattkemper, T. W., et al. (2008). ProSE - "Software as a Service" for Quantitative Proteomics (Poster abstract). HUPO 7th Annual World Congress
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018398
Herold, J., Friedenberger, M., Bode, M., Rajpoot, N., Schubert, W., & Nattkemper, T. W. (2008). Flexible Synapse Detection in Fluorescence Micrographs by Modeling Human Expert Grading. Proc. of 2008 IEEE International Symposium on Biomedical Imaging. doi:10.1109/isbi.2008.4541254
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018432
Scherbart, A., & Nattkemper, T. W. (2008). The Diversity of Regression Ensembles Combining Bagging and Random Subspace Method. International Conference on Neural Information Processing. doi:10.1007/978-3-642-03040-6_111
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2007 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018412
Martin, C., Díaz Solórzano, N. N., Ontrup, J., & Nattkemper, T. W. (2007). Genome feature exploration using hyperbolic Self-Organizing Maps. Proceedings of the 6th International Workshop on Self-Organizing Maps (WSOM 2007) Bielefeld: Bielefeld University. doi:10.2390/biecoll-wsom2007-140
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2007 | Report | Veröffentlicht | PUB-ID: 2499308
Escoffier, B., Milanič, M., & Paschos, V. T. (2007). Simple and fast reoptimizations for the Steiner tree problem. DIMACS, Center for Discrete Mathematics and Theoretical Computer Science, NJ.
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2007 | Report | Veröffentlicht | PUB-ID: 2308810 OA
Böcker, S., Letzel, M., Lipták, Z., & Pervukhin, A. (2007). Identifying metabolites with integer decomposition techniques, using only their mass spectrometric isotope patterns (Forschungsberichte der Technischen Fakultät, Abteilung Informationstechnik / Universität Bielefeld). Bielefeld: Technical Faculty, Bielefeld University.
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2007 | Bielefelder E-Dissertation | PUB-ID: 2302005 OA
Krause, L. (2007). From single genomes to natural microbial communities : novel methods for the high-throughput analysis of genomic sequences. Bielefeld (Germany): Bielefeld University.
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2007 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2499472
Lozin, V. V., & Milanic, M. (2007). Tree-width and Optimization in Bounded Degree Graphs. Proc. 33rd International Workshop on Graph-Theoretic Concepts in Computer Science (WG 2007), 4769, 45-54. doi:10.1007/978-3-540-74839-7_5
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2007 | Bielefelder E-Dissertation | PUB-ID: 2305131 OA
Carvalho Junior, S. A. de (2007). Algorithms for improving the design and production of oligonucleotide microarrays. Bielefeld (Germany): Bielefeld University.
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2007 | Report | Veröffentlicht | PUB-ID: 2308854 OA
Cicalese, F., & Quitzau, J. A. A. (2007). 2-Stage Fault Tolerant Interval Group Testing (Forschungsberichte der Technischen Fakultät, Abteilung Informationstechnik / Universität Bielefeld). Bielefeld: Universität Bielefeld, Technische Fakultät.
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2007 | Report | Veröffentlicht | PUB-ID: 2499449
Kaminski, M., Lozin, V. V., & Milanic, M. (2007). Recent Developments on Graphs of Bounded Clique-width. Rutgers Center for Operations Research, Rutgers University, NJ.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2499456
Klau, G. W., Rahmann, S., Schliep, A., Vingron, M., & Reinert, K. (2007). Integer linear programming approaches for non-unique probe selection. Discrete Applied Mathematics, 155(6-7), 840-856. doi:10.1016/j.dam.2005.09.021
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2007 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 1918828
Schmidt, T., & Stoye, J. (2007). Chapter 12: Gecko and GhostFam - Rigorous and Efficient Gene Cluster Detection in Prokaryotic Genomes. In N. H. Bergman (Ed.), Methods in Molecular Biology: Vol. 396. Comparative Genomics, Volume 2 (pp. 165-182). Totowa, NJ: Humana Press Inc. doi:10.1007/978-1-59745-515-2_12
PUB | DOI | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2499284
Cicalese, F., Damaschke, P., Tansini, L., & Werth, S. (2007). Overlaps help: Improved bounds for group testing with interval queries. Discrete Applied Mathematics, 155(3), 288-299. doi:10.1016/j.dam.2006.07.002
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2499429
Gerlach, D., Wolf, M., Dandekar, T., Müller, T., Pokorny, A., & Rahmann, S. (2007). Deep Metazoan Phylogeny. In Silico Biology, 7, Article 15.
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2007 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2499467
Lozin, V. V., & Milanic, M. (2007). Maximum independent sets in graphs of low degree. Proc. 18th Annual ACM-SIAM Symposium on Discrete Algorithms (SODA 2007), 874-880
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2499481
Rahmann, S., Wittkop, T., Baumbach, J., Martin, M., Truss, A., & Böcker, S. (2007). Exact and Heuristic Algorithms for Weighted Cluster Editing. Comput Syst Bioinformatics Conf, 6(1), 391-401.
PUB | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2499135
Baumbach, J., Bunkowski, A., Lange, S., Oberwahrenbrock, T., Kleinbölting, N., Rahmann, S., & Baumbach, J. I. (2007). IMS2- An integrated medical software system for early lung cancer detection using ion mobility spectrometry data of human breath. Journal of Integrative Bioinformatics, 4(3), 75. doi:10.2390/biecoll-jib-2007-75
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2007 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2499279
Cicalese, F., & Amgarten Quitzau, J. A. (2007). 2-Stage Fault Tolerant Interval Group Testing. In T. Tokuyama (Ed.), Lecture notes in computer science, 4835. Algorithms and Computation. 18th International Symposium, ISAAC 2007, Sendai, Japan, December 17-19, 2007. Proceedings (pp. 858-868). doi:10.1007/978-3-540-77120-3_74
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2499125
Baake, E., & Herms, I. (2007). Single-Crossover Dynamics: Finite versus Infinite Populations. Bull. Math. Biol., 70(2), 603-624. doi:10.1007/s11538-007-9270-5
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2499132
Baumbach, J. (2007). CoryneRegNet 4.0 – A reference database for corynebacterial gene regulatory networks. BMC Bioinformatics, 8(1), 429. doi:10.1186/1471-2105-8-429
PUB | DOI | WoS | PubMed | Europe PMC
 
2007 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2499168
Carvalho Jr. de, S. A., & Rahmann, S. (2007). Improving the design of GeneChip arrays by combining placement and embedding. Computational Systems Bioformatics Conference, 417-427.
PUB | PubMed | Europe PMC
 
2007 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2499442
Höner zu Siederdissen, C., Ragg, S., & Rahmann, S. (2007). Discovering biomarkers for myocardial infarction from SELDI-TOF spectra. Advances in Data Analysis. Proceedings of the 30th Annual Conference of the Gesellschaft für Klassifikation e.V., Studies in Classification, Data Analysis, and Knowledge Organization, 569-576. Springer. doi:10.1007/978-3-540-70981-7_65
PUB | DOI
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1631047
Meisinger-Henschel, C., Schmidt, M., Lukassen, S., Linke, B., Krause, L., Konietzny, S., Goesmann, A., et al. (2007). Genomic sequence of chorioallantois vaccinia virus Ankara, the ancestor of modified vaccinia virus Ankara. JOURNAL OF GENERAL VIROLOGY, 88(12), 3249-3259. doi:10.1099/vir.0.83156-0
PUB | DOI | WoS | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1918432
Didier, G., Schmidt, T., Stoye, J., & Tsur, D. (2007). Character Sets of Strings. Journal of Discrete Algorithms, 5(2), 330-340. doi:10.1016/j.jda.2006.03.021
PUB | DOI
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783712 OA
Kaltenbach, H. - M., Wilke, A., & Böcker, S. (2007). SAMPI: protein identification with mass spectra alignments. BMC Bioinformatics, 8(1), 102. doi:10.1186/1471-2105-8-102
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783754 OA
Neuweger, H., Baumbach, J., Albaum, S., Bekel, T., Dondrup, M., Hüser, A. T., Kalinowski, J., et al. (2007). CoryneCenter: an online resource for the integrated analysis of corynebacterial genome and transcriptome data. BMC Systems Biology, 1(1), 55. doi:10.1186/1752-0509-1-55
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1631327
Schneiker-Bekel, S., Perlova, O., Kaiser, O., Gerth, K., Alici, A., Altmeyer, M. O., Bartels, D., et al. (2007). Complete genome sequence of the myxobacterium Sorangium cellulosum. Nature Biotechnology, 25(11), 1281-1289. doi:10.1038/nbt1354
PUB | DOI | WoS | PubMed | Europe PMC
 
2007 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1902192
Välimäki, N., Gerlach, W., Dixit, K., & Mäkinen, V. (2007). Engineering a Compressed Suffix Tree Implementation. Proceedings of 6th Workshop on Experimental Algorithms (WEA'07), 217-228. Springer-Verlag.
PUB
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1594917
Välimäki, N., Gerlach, W., Dixit, K., & Mäkinen, V. (2007). Compressed suffix tree - a basis for genome-scale sequence analysis. BIOINFORMATICS, 23(5), 629-630. doi:10.1093/bioinformatics/btl681
PUB | DOI | WoS | PubMed | Europe PMC
 
2007 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1594020
Baumbach, J., Wittkop, T., Rademacher, K., Rahmann, S., Brinkrolf, K., & Tauch, A. (2007). CoryneRegNet 3.0 - An interactive systems biology platform for the analysis of gene regulatory networks in corynebacteria and Escherichia coli. JOURNAL OF BIOTECHNOLOGY, 129(2), 279-289. doi:10.1016/j.jbiotec.2006.12.012
PUB | DOI | WoS | PubMed | Europe PMC
 
2007 | Bielefelder E-Dissertation | PUB-ID: 2303359 OA
Schürmann, K. - B. (2007). Suffix arrays in theory and practice. Bielefeld (Germany): Bielefeld University.
PUB | PDF
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1595253
Schürmann, K. - B., & Stoye, J. (2007). An incomplex algorithm for fast suffix array construction. SOFTWARE-PRACTICE & EXPERIENCE, 37(3), 309-329. doi:10.1002/spe.768
PUB | DOI | WoS
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1630749
Lessmann, B., Nattkemper, T. W., Hans, V. H., & Degenhard, A. (2007). A method for linking computed image features to histological semantics in neuropathology. Journal of Biomedical Informatics, 40(6), 631-641. doi:10.1016/j.jbi.2007.06.007
PUB | DOI | WoS | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783345 OA
Krause, L., McHardy, A. C., Nattkemper, T. W., Pühler, A., Stoye, J., & Meyer, F. (2007). GISMO - gene identification using a support vector machine for ORF classification. Nucleic Acids Research, 35(2), 540-549. doi:10.1093/nar/gkl1083
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2007 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2018416
Nattkemper, T. W., Degenhard, A., & Twellmann, T. (2007). Breas. In M. A. Hayat (Ed.), Cancer Imaging - Lung and breast carcinomas (Vol. 1, pp. 309-324). Academic Press.
PUB
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1630781
Mellmann, A., Weniger, T., Berssenbrügge, C., Rothgänger, J., Sammeth, M., Stoye, J., & Harmsen, D. (2007). Based Upon Repeat Pattern (BURP): an algorithm to characterize the long-term evolution of Staphylococcus aureus populations based on spa polymorphisms. BMC MICROBIOLOGY, 7(1), 98. doi:10.1186/1471-2180-7-98
PUB | DOI | WoS | PubMed | Europe PMC
 
2006 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2499677
Cicalese, F., & Laber, E. (2006). On the Competitive Ratio of Evaluating Priced Functions. Proc. 17th Annual ACM-SIAM Symposium on Discrete Algorithms (SODA 2006), 944-953.
PUB
 
2006 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1596815
Rahmann, S., & Klau, G. W. (2006). Integer linear programs for discovering approximate gene clusters. In P. Bücher & B. M. E. Moret (Eds.), Lecture Notes in Computer Science: Vol. 4175. Algorithms in Bioinformatics. WABI 2006 (pp. 298-309). Berlin: Springer. doi:10.1007/11851561_28
PUB | DOI | WoS
 
2006 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2374232
Varini, C., Lessmann, B., Degenhard, A., Hans, V. H., & Nattkemper, T. W. (2006). Visual Exploration of Pathology Images by a Discrete Wavelet Transform Preprocessed Locally Linear Embedding. In H. Handels, J. Ehrhardt, A. Horsch, H. - P. Meinzer, & T. Tolxdorff (Eds.), Bildverarbeitung für die Medizin (pp. 66-70). Springer.
PUB | Download (ext.)
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2499511
Böcker, S. (2006). Sequencing from Compomers: The Puzzle. Theor. Comput. Syst., 39(3), 455-471. doi:10.1007/s00224-005-1238-y
PUB | DOI | WoS
 
2006 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2499624
Cicalese, F., & Deppe, C. (2006). Q-ary Ulam-Rényi game with constrained lies. In R. Ahlswede, L. Bäumer, N. Cai, H. Aydinian, V. Blinovsky, C. Deppe, & H. Masurian (Eds.), Lecture notes in computer science: Vol. 4123. General Theory of Information Transfer and Combinatorics (pp. 663-679). Springer. doi:10.1007/11889342_42
PUB | DOI
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2659363
Feijão, P., Neiva, L. S., Azeredo-Espin, A. M. L. d., & Lessinger, A. C. (2006). AMiGA: the arthropodan mitochondrial genomes accessible database. Bioinformatics, 22(7), 902-903. doi:10.1093/bioinformatics/btl021
PUB | DOI | WoS | PubMed | Europe PMC
 
2006 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2374254
Lessmann, B., Nattkemper, T. W., Huth, J., Loyek, C., Kessar, P., Khazen, M., Pointon, L., et al. (2006). Content Based Image Retrieval for Dynamic Time Series Data. Proceedings of BVM, 61-65
PUB
 
2006 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2374494
Timm, W., Böcker, S., Twellmann, T., & Nattkemper, T. W. (2006). Peak intensity prediction for pmf mass spectra using support vector regression. Proc. of the 7th International FLINS Conference on Applied Artificial Intelligence, 565-572. doi:10.1142/9789812774118_0080
PUB | DOI
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2499499
Baumbach, J., Brinkrolf, K., Wittkop, T., Tauch, A., & Rahmann, S. (2006). CoryneRegNet 2: An integrative bioinformatics approach for reconstruction and comparison of transcriptional regulatory networks in prokaryotes. Journal of Integrative Bioinformatics, 3(2), 24. doi:10.2390/biecoll-jib-2006-24
PUB | DOI
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1902179
Gerlach, W., & Giegerich, R. (2006). GUUGle: a utility for fast exact matching under RNA complementary rules including G-U base pairing. Bioinformatics, 22(6), 762-764. doi:10.1093/bioinformatics/btk041
PUB | DOI | WoS | PubMed | Europe PMC
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2499664
Cicalese, F., Gargano, L., & Vaccaro, U. (2006). A Note on Approximation of Uniform Distributions from Variable-to-Fixed Length Codes. IEEE Transactions on Information Theory, 52(8), 3772-3777. doi:10.1109/tit.2006.878151
PUB | DOI | WoS
 
2006 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2499515
Böcker, S., Pervukhin, A., Lipták, Z., & Letzel, M. (2006). Decomposing metabolomic isotope patterns. Proc. WABI, 4175, 12-23. doi:10.1007/11851561_2
PUB | DOI
 
2006 | Bielefelder E-Dissertation | PUB-ID: 2305885 OA
Taher, L. (2006). Computational methods for splice site prediction. Bielefeld (Germany): Bielefeld University.
PUB | PDF
 
2006 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2499562
Carvalho Jr. de, S. A., & Rahmann, S. (2006). Improving the layout of oligonucleotide microarrays: Pivot Partitioning. Proc. 6th Workshop of Algorithms in Bioinformatics, 4175, 321-332. doi:10.1007/11851561_30
PUB | DOI
 
2006 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1599943
Sammeth, M., Griebel, T., Tille, F., & Stoye, J. (2006). Panta rhei (QAlign2): an open graphical environment for sequence analysis. BIOINFORMATICS, 22(7), 889-890. doi:10.1093/bioinformatics/btl007
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