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419 Publikationen

2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919211
Hufsky, F.; Kuchenbecker, L.; Jahn, K.; Stoye, J.; Böcker, S. (2010): Swiftly Computing Center Strings. In: Proc. of WABI 2010. (LNBI, 6293). S. 325-336.
PUB | DOI | WoS | PubMed | Europe PMC
 
2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919216
Kovac, J.; Dias Vieira Braga, M.; Stoye, J. (2010): The Problem of Chromosome Reincorporation in DCJ Sorting and Halving. In: Proc. of Recomb-CG 2010. (LNBI, 6398). S. 13-24.
PUB | DOI
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1794419
Herold, J.; Zhou, L.; Abouna, S.; Pelengaris, S.; Epstein, D.; Khan, M.; Nattkemper, T. W. (2010): Integrating semantic annotation and information visualization for the analysis of multichannel fluorescence micrographs from pancreatic tissue Computerized Medical Imaging and Graphics,34:(6): 446-452.
PUB | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1898025
Dias Vieira Braga, M.; Stoye, J. (2010): The Solution Space of Sorting by DCJ Journal of Computational Biology,17:(9): 1145-1165.
PUB | DOI | WoS | PubMed | Europe PMC
 
2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919215
Dias Vieira Braga, M.; Willing, E.; Stoye, J. (2010): Genomic Distance with DCJ and Indels. In: Proc. of WABI 2010. (LNBI, 6293). S. 90-101.
PUB | DOI
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1929860
Schwientek, P.; Ellinghaus, P.; Steppan, S.; D'Urso, D.; Seewald, M.; Kassner, A.; Cebulla, R.; Schulte-Eistrup, S.; Morshuis, M.; Roefe, D.; El Banayosy, A.; Koerfer, R.; Milting, H. (2010): Global gene expression analysis in nonfailing and failing myocardium pre- and postpulsatile and nonpulsatile ventricular assist device support PHYSIOLOGICAL GENOMICS,42:(3): 397-405.
PUB | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1930110
Joseph, B.; Schneiker-Bekel, S.; Schramm-Glueck, A.; Blom, J.; Claus, H.; Linke, B.; Schwarz, R. F.; Becker, A.; Goesmann, A.; Frosch, M.; Schoen, C. (2010): Comparative Genome Biology of a Serogroup B Carriage and Disease Strain Supports a Polygenic Nature of Meningococcal Virulence JOURNAL OF BACTERIOLOGY,192:(20): 5363-5377.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589663
Bergeron, A.; Mixtacki, J.; Stoye, J. (2009): A New Linear Time Algorithm to Compute the Genomic Distance via the Double Cut and Join Distance Theoretical Computer Science,410:(51): 5300-5316.
PUB | DOI | WoS
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2427059
Escoffier, B.; Milanič, M.; Paschos, V. T. (2009): Simple and fast reoptimizations for the Steiner tree problem Algorithmic Operations Research,4:(2): 86-94.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2308924
Cicalese, F.; Milanic, M. (2009): Competitive evaluation of threshold functions in the priced information model Annals of Operations Research,188:(1): 111-132.
PUB | DOI | WoS
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2426437
Bunkowski, A.; Bödeker, B.; Bader, S.; Westhoff, M.; Litterst, P.; Baumbach, J. I. (2009): MCC/IMS signals in human breath related to sarcoidosis-results of a feasibility study using an automated peak finding procedure Journal of Breath Research,3:(4): 046001.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2426487
Böcker, S.; Lipták, Z.; Pervukhin, A.; Letzel, M. C. (2009): SIRIUS: decomposing isotope patterns for metabolite identification Bioinformatics,25:(2): 218-224.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Preprint | Veröffentlicht | PUB-ID: 2426653
Cicalese, F.; Jacobs, T.; Laber, E. S.; Molinaro, M. (2009): On the Complexity of Searching in Trees: Average-case Minimization
PUB | arXiv
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2426660
Cicalese, F.; Manne, F.; Xin, Q. (2009): Faster Deterministic Communication in Radio Networks Algorithmica,54:(2): 226-242.
PUB | DOI | WoS
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2427118
Engelmann, J. A.; Rahmann, S.; Wolf, M.; Schultz, J.; Fritzilas, E.; Kneitz, S.; Dandekar, T.; Müller, T. (2009): Modeling cross-hybridization on phylogenetic DNA microarrays increases the detection power of closely related species Molecular Ecology Resources,9:(1): 83-93.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Bielefelder E-Dissertation | PUB-ID: 2305073 OA
Oehm, S. (2009): Comparing organisms on the level of metabolism. Bielefeld (Germany): Bielefeld University.
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2009 | Bielefelder E-Dissertation | PUB-ID: 2301318 OA
Neuweger, H. (2009): MeltDB : a software platform for the analysis and integration of metabolomics experiment data. Bielefeld (Germany): Bielefeld University.
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2009 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2659405
Feijão, P.; Meidanis, J. (2009): SCJ: A Variant of Breakpoint Distance for Which Sorting, Genome Median and Genome Halving Problems Are Easy. In: Steven L. Salzberg; Tandy Warnow (Hrsg.): Algorithms in Bioinformatics. (Lecture Notes in Computer Science, 5724). S. 85-96.
PUB | DOI
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2427161
Kamiński, M.; Lozin, V. V.; Milanič, M. (2009): Recent developments on graphs of bounded clique-width Discrete Appl. Math.,157:(12): 2747-2761.
PUB | DOI | WoS
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2427173
Kamiński, M.; Medvedev, P.; Milanič, M. (2009): On the plane-width of graphs Electronic Notes in Discrete Mathematics,34: 633-637.
PUB | DOI
 
2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919206
Dias Vieira Braga, M.; Stoye, J. (2009): Counting All DCJ Sorting Scenarios. In: Proc. of Recomb-CG 2009. (LNBI, 5817). S. 36-47.
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2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2426605
Cicalese, F.; Fici, G.; Lipták, Z. (2009): Searching for Jumbled Patterns in Strings. In: Proc. of the Prague Stringology Conference 2009. S. 105-117.
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2009 | Bielefelder E-Dissertation | PUB-ID: 2303240 OA
Gagie, T. (2009): New algorithms and lower bounds for sequential-access data compression. Bielefeld (Germany): Bielefeld University.
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2009 | Bielefelder E-Dissertation | PUB-ID: 2302608 OA
Herms, I. (2009): Probabilistic arithmetic automata : applications of a stochastic computational framework in biological sequence analysis. Bielefeld (Germany): Bielefeld University.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2406118
Välimäki, N.; Mäkinen, V.; Gerlach, W.; Dixit, K. (2009): Engineering a compressed suffix tree implementation Journal of Experimental Algorithmics (JEA),14: 4.2-2:4.23.
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2009 | Bielefelder E-Dissertation | PUB-ID: 2304745 OA
Fritzilas, E. (2009): Combinatorial aspects of low-rank matrix factorization and two applications in bioinformatics. Bielefeld (Germany): Bielefeld University.
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2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919207
Blin, G.; Stoye, J. (2009): Finding Nested Common Intervals Efficiently. In: Proc. of Recomb-CG 2009. (LNBI, 5817). S. 59-69.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018390
Herold, J.; Abouna, S.; Zhou, L.; Pelengaris, S.; Epstein, D. B. A.; Khan, M.; Nattkemper, T. W. (2009): A way towards analyzing high-content bioimage data by means of semantic annotation and visual data mining. In: SPIE Medical Imaging.
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2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018422
Ontrup, J.; Ehnert, N.; Bergmann, M.; Nattkemper, T. W. (2009): BIIGLE - Web 2.0 enabled labelling and exploring of images from the Arctic deep-sea observatory HAUSGARTEN. In: OCEANS 2009 - Europe. Bremen.
PUB | DOI
 
2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018427
Qureshi, H.; Rajpoot, N.; Nattkemper, T. W.; Hans, V. (2009): A Robust Adaptive Wavelet-based Method for Classification of Meningioma Histology Images. In: MICCAI«2009 Workshop on Optical Tissue Image Analysis in Microscopy, Histology, and Endoscopy.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783187 OA
Blom, J.; Albaum, S.; Doppmeier, D.; Pühler, A.; Vorhölter, F. - J.; Zakrzewski, M.; Goesmann, A. (2009): EDGAR: a software framework for the comparative analysis of prokaryotic genomes BMC Bioinformatics,10:(1):154
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1636062
Ontrup, J.; Ritter, H.; Scholz, S.; Wagner, R. (2009): Detecting, Assessing, and Monitoring Relevant Topics in Virtual Information Environments IEEE Transactions on Knowledge and Data Engineering,21:(3): 415-427.
PUB | DOI | WoS
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1898137
Jahn, K.; Stoye, J. (2009): Approximative Gencluster und ihre Anwendung in der komparativen Genomik Informatik-Spektrum,32:(4): 288-300.
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2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1893884
Husemann, P.; Stoye, J. (2009): Phylogenetic Comparative Assembly. In: Proc. of WABI 2009. (LNBI, 5724). S. 145-156.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635314 OA
Diaz, N. N.; Krause, L.; Goesmann, A.; Niehaus, K.; Nattkemper, T. W. (2009): TACOA - Taxonomic classification of environmental genomic fragments using a kernelized nearest neighbor approach BMC Bioinformatics,10:(1): 56.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635321 OA
Dondrup, M.; Albaum, S.; Griebel, T.; Henckel, K.; Jünemann, S.; Kahlke, T.; Kleindt, C. K.; Kuester, H.; Linke, B.; Mertens, D.; Mittard-Runte, V.; Neuweger, H.; Runte, K. J.; Tauch, A.; Tille, F.; Pühler, A.; Goesmann, A. (2009): EMMA 2-A MAGE-compliant system for the collaborative analysis and integration of microarray data BMC Bioinformatics,10:(1):50
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1591507
Stoye, J.; Wittler, R. (2009): A Unified Approach for Reconstructing Ancient Gene Clusters IEEE/ACM Transactions on Computational Biology and Bioinformatics,6:(3): 387-400.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589098 OA
Gerlach, W.; Jünemann, S.; Tille, F.; Goesmann, A.; Stoye, J. (2009): WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads BMC Bioinformatics,10:(1): 430.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589531
Albaum, S.; Neuweger, H.; Fraenzel, B.; Lange, S.; Mertens, D.; Troetschel, C.; Wolters, D.; Kalinowski, J.; Nattkemper, T. W.; Goesmann, A. (2009): Qupe-a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments Bioinformatics,25:(23): 3128-3134.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1590204
Brudno, M.; Medvedev, P.; Stoye, J.; De La Vega, F. M. (2009): A report on the 2009 SIG on short read sequencing and algorithms (Short-SIG) BIOINFORMATICS,25:(21): 2863-2864.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588783
Purser, A.; Bergmann, M.; Ontrup, J.; Nattkemper, T. W. (2009): Use of machine-learning algorithms for the automated detection of cold-water coral habitats: a pilot study Marine Ecology Progress Series,397: 241-251.
PUB | DOI | WoS
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1898105
Böcker, S.; Jahn, K.; Mixtacki, J.; Stoye, J. (2009): Computation of Median Gene Clusters Journal of Computational Biology,16:(8): 1085-1099.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1591319
Hoffmann, N.; Stoye, J. (2009): ChromA: signal-based retention time alignment for chromatography-mass spectrometry data Bioinformatics,25:(16): 2080-2081.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588760 OA
Dias Vieira Braga, M.; Gautier, C.; Sagot, M. - F. (2009): An asymmetric approach to preserve common intervals while sorting by reversals Algorithms for Molecular Biology,4:(1): 16.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919209
Medvedev, P.; Stoye, J. (2009): Rearrangement Models and Single-Cut Operations. In: Comparative Genomics : International Workshop, RECOMB-CG 2009, Budapest, Hungary, September 27-29, 2009. Proceedings. Berlin, Heidelberg: Springer. (Lecture Notes in Computer Science, 5817). S. 84-97.
PUB | DOI
 
2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018440
Schoening, T.; Ehnert, N.; Ontrup, J.; Nattkemper, T. W. (2009): BIIGLE Tools - A Web 2.0 Approach for Visual Bioimage Database Mining. In: IV 09 - Intl. Conference on Information Visualization.
PUB | DOI
 
2009 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 1918945
Stoye, J. (2009): Computational Short Read Metagenomics. S. 3-4.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634447
Bekel, T.; Henckel, K.; Küster, H.; Meyer, F.; Mittard-Runte, V.; Neuweger, H.; Paarmann, D.; Rupp, O.; Zakrzewski, M.; Pühler, A.; Stoye, J.; Goesmann, A. (2009): The Sequence Analysis and Management System - SAMS-2.0: Data management and sequence analysis adapted to changing requirements from traditional sanger sequencing to ultrafast sequencing technologies Journal of Biotechnology,140:(1-2): 3-12.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634615
Zeschnigk, M.; Martin, M.; Betzl, G.; Kalbe, A.; Sirsch, C.; Buiting, K.; Gross, S.; Fritzilas, E.; Frey, B.; Rahmann, S.; Horsthemke, B. (2009): Massive parallel bisulfite sequencing of CG-rich DNA fragments reveals that methylation of many X-chromosomal CpG islands in female blood DNA is incomplete HUMAN MOLECULAR GENETICS,18:(8): 1439-1448.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2427252
Alekseev, V. E.; Lozin, V. V.; Malyshev, D.; Milanič, M. (2008): The Maximum Independent Set Problem in Planar Graphs. In: Proc. MFCS 2008. S. 96-107.
PUB | DOI
 
2008 | Bielefelder E-Dissertation | PUB-ID: 2306324 OA
Baumbach, J. (2008): CoryneRegNet : a reference database and analysis platform for corynebacterial gene regulatory networks. Bielefeld (Germany): Bielefeld University.
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2008 | Bielefelder E-Dissertation | PUB-ID: 2302950 OA
Zakotnik, J. (2008): The double cut and join operation and its applications to genome rearrangements. Bielefeld (Germany): Bielefeld University.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2659345
Oliveira, M. T.; Barau, J. G.; Junqueira, A. C. M.; Feijão, P.; Rosa, A. C. da; Abreu, C. F.; Azeredo-Espin, A. M. L.; Lessinger, A. C. (2008): Structure and evolution of the mitochondrial genomes of Haematobia irritans and Stomoxys calcitrans: The Muscidae (Diptera: Calyptratae) perspective Molecular Phylogenetics and Evolution,48:(3): 850-857.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2308903
Cicalese, F.; Laber, E. S. (2008): Function Evaluation Via Linear Programming in the Priced Information Model. In: Proc. ICALP 2008. S. 173-185.
PUB | DOI
 
2008 | Report | Veröffentlicht | PUB-ID: 2308927 OA
Cicalese, F.; Milanivc, M. (2008): On Parsimony Haplotyping. Bielefeld: Universität Bielefeld, Technische Fakultät.
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2308974
Fritzilas, E.; Rios-Solis, Y. A.; Rahmann, S. (2008): Structural Identifiability in Low-Rank Matrix Factorization. In: Xiaodong Hu; Jie Wang (Hrsg.): Computing and Combinatorics 14th Annual International Conference, COCOON 2008 Dalian, China, June 27-29, 2008 Proceedings. Berlin u.a.: Springer. (Lecture Notes in Computer Science, 5092, ). S. 140-148.
PUB | DOI
 
2008 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2499103
Milanivc, M.; Monnot, J. (2008): The Complexity of the Exact Weighted Independent Set Problem. In: Combinatorial optimization and theoretical computer science: interfaces and perspectives : 30th anniversary of the LAMSADE. S. 393-432.
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2499108
Mixtacki, J. (2008): Genome Halving under DCJ Revisited. In: Xiaodong Hu; Jie Wang (Hrsg.): Computing and Combinatorics. 14th Annual International Conference, COCOON 2008 Dalian, China, June 27-29, 2008 Proceedings. (Lecture Notes in Computer Science, 5092, ). S. 276-286.
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919198
Quitzau, J. A. A.; Stoye, J. (2008): Detecting Repeat Families in Incompletely Sequenced Genomes. In: Proc. of WABI 2008. (LNBI, 5251). S. 342-353.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2498846
Boyar, J.; Medvedev, P. (2008): The relative worst order ratio applied to seat reservation ACM Transactions on Algorithms,4:(4): 1-22.
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2008 | Report | Veröffentlicht | PUB-ID: 2499065
Cicalese, F.; Milanic, M. (2008): Computing with Priced Information: game trees and the value dependent cost model. Technische Fakultät, Universität Bielefeld.
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2499072
Herms, I.; Rahmann, S. (2008): Computing Alignment Seed Sensitivity with Probabilistic Arithmetic Automata. In: Keith A. Crandall; Jens Lagergren (Hrsg.): Algorithms in Bioinformatics: 8th International Workshop, WABI 2008, Karlsruhe, Germany, September 15-19, 2008. Proceedings. Berlin u.a.: Springer. (Lecture Notes in Computer Science, 5251, ). S. 318-329.
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2008 | Report | Veröffentlicht | PUB-ID: 2308930 OA
Cicalese, F.; Milanivc, M. (2008): Computing with Priced Information: game trees and the value dependent cost model. Bielefeld: Universität Bielefeld, Technische Fakultät.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2499098
Lozin, V. V.; Milanic, M. (2008): A polynomial algorithm to find an independent set of maximum weight in a fork-free graph J. Discr. Alg.,6:(4): 595-604.
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2008 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2499120
Rahmann, S.; Klau, G. W. (2008): Integer Linear Programming Techniques for Discovering Approximate Gene Clusters. In: Ion I. Mǎndoiu; Alexander Zelikovsky (Hrsg.): Bioinformatics Algorithms: Techniques and Applications. Wiley Interscience. S. 203-222.
PUB | DOI
 
2008 | Report | PUB-ID: 1970459 OA
Quitzau, J. A. A.; Stoye, J. (2008): A space efficient representation for sparse de Bruijn subgraphs. Bielefeld: Technische Fakultät der Universität Bielefeld.
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2008 | Report | PUB-ID: 1970461 OA
Ejaz, T.; Rahmann, S.; Stoye, J. (2008): Online Abelian Pattern Matching. Bielefeld: Technische Fakultät der Universität Bielefeld.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1636699
Neuweger, H.; Albaum, S.; Dondrup, M.; Persicke, M.; Watt, T.; Niehaus, K.; Stoye, J.; Goesmann, A. (2008): MeltDB: a software platform for the analysis and integration of metabolomics experiment data Bioinformatics,24:(23): 2726-2732.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Bielefelder E-Dissertation | PUB-ID: 2305571 OA
Bannert, C. (2008): Flexible protein annotation with sequence- and secondary structure information. Bielefeld (Germany): Bielefeld University.
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2008 | Lexikoneintrag | Veröffentlicht | PUB-ID: 1918834
Stoye, J. (2008): Suffix Tree Construction in RAM (1997; Farach-Colton). In: Ming-Yang Kao (Hrsg.): Encyclopedia of Algorithms. Springer Verlag. S. 925-928.
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919192
Böcker, S.; Jahn, K.; Mixtacki, J.; Stoye, J. (2008): Computation of Median Gene Clusters. In: Proc. of RECOMB 2008. (LNBI, 4955). S. 331-345.
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919200
Bergeron, A.; Mixtacki, J.; Stoye, J. (2008): On Computing the Breakpoint Reuse Rate in Rearrangement Scenarios. In: Proc. of Recomb-CG 2008. (LNBI, 5267). S. 226-240.
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018405
Loyek, C.; Woermann, F. G.; Nattkemper, T. W. (2008): Detection of Focal Cortical Dysplasia in MRI Using Textural Features. In: Proceedings of BVM 2008. Berlin, Heidelberg: Springer Verlag. S. 432-436.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1636280 OA
Timm, W.; Scherbart, A.; Boecker, S.; Kohlbacher, O.; Nattkemper, T. W. (2008): Peak intensity prediction in MALDI-TOF mass spectrometry: A machine learning study to support quantitative proteomics BMC Bioinformatics,9:(1): 443.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592257
Schoen, C.; Blom, J.; Claus, H.; Schramm-Glueck, A.; Brandt, P.; Mueller, T.; Goesmann, A.; Joseph, B.; Konietzny, S.; Kurzai, O.; Schmitt, C.; Friedrich, T.; Linke, B.; Vogel, U.; Frosch, M. (2008): Whole-genome comparison of disease and carriage strains provides insights into virulence evolution in Neisseria meningitidis PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA,105:(9): 3473-3478.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1587304
Hazelhurst, S.; Hide, W.; Lipták, Z.; Nogueira, R.; Starfield, R. (2008): An overview of the wcd EST clustering tool BIOINFORMATICS,24:(13): 1542-1546.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592737
Boecker, S.; Lipták, Z.; Martin, M.; Pervukhin, A.; Sudek, H. (2008): DECOMP - from interpreting mass spectrometry peaks to solving the money changing problem BIOINFORMATICS,24:(4): 591-593.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1587078
Schürmann, K. - B.; Stoye, J. (2008): Counting suffix arrays and strings THEORETICAL COMPUTER SCIENCE,395:(2-3): 220-234.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1587052
Martin, C.; Diaz, N. N.; Ontrup, J.; Nattkemper, T. W. (2008): Hyperbolic SOM-based clustering of DNA fragment features for taxonomic visualization and classification Bioinformatics,24:(14): 1568-1574.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1586009
Krause, L.; Diaz, N. N.; Edwards, R. A.; Gartemann, K. - H.; Krömeke, H.; Neuweger, H.; Pühler, A.; Runte, K. J.; Schlüter, A.; Stoye, J.; Szczepanowski, R.; Tauch, A.; Goesmann, A. (2008): Taxonomic composition and gene content of a methane-producing microbial community isolated from a biogas reactor JOURNAL OF BIOTECHNOLOGY,136:(1-2): 91-101.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1586785 OA
Oehm, S.; Gilbert, D.; Tauch, A.; Stoye, J.; Goesmann, A. (2008): Comparative Pathway Analyzer - a web server for comparative analysis, clustering and visualization of metabolic networks in multiple organisms NUCLEIC ACIDS RESEARCH,36:(Web Server): W433-W437.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585939
Tauch, A.; Schneider, J.; Szczepanowski, R.; Tilker, A.; Viehöver, P.; Gartemann, K. - H.; Arnold, W.; Blom, J.; Brinkrolf, K.; Brune, I.; Goetker, S.; Weisshaar, B.; Goesmann, A.; Droege, M.; Pühler, A. (2008): Ultrafast pyrosequencing of Corynebacterium kroppenstedtii DSM44385 revealed insights into the physiology of a lipophilic corynebacterium that lacks mycolic acids Journal of Biotechnology,136:(1-2): 22-30.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783364 OA
Krause, L.; Diaz, N. N.; Goesmann, A.; Kelley, S.; Nattkemper, T. W.; Rohwer, F.; Edwards, R. A.; Stoye, J. (2008): Phylogenetic classification of short environmental DNA fragments Nucleic Acids Research,36:(7): 2230-2239.
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919195
Bergeron, A.; Mixtacki, J.; Stoye, J. (2008): HP Distance via Double Cut and Join Distance. In: Combinatorial Pattern Matching. 19th Annual Symposium, CPM 2008, Pisa, Italy, June 18-20, 2008 Proceedings. (Lecture Notes in Computer Science, 5029, ). S. 56-68.
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018409
Martin, C.; Nattkemper, T. W. (2008): A Tree Index to Support Clustering Based Exploratory Data Analysis. In: Bioinformatics Research and Development : Second International Conference, BIRD 2008 Vienna, Austria, July 7-9, 2008 Proceedings. Berlin, Heidelberg: Springer. (Communications in Computer and Information Science, 13). S. 1-15.
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018435
Scherbart, A.; Timm, W.; Böcker, S.; Nattkemper, T. W. (2008): Improved Mass Spectrometry Peak Intensity Prediction by Adaptive Feature Weighting. In: International Conference on Neural Information Processing. Auckland, New Zealand.
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018381
Albaum, S.; Neuweger, H.; Lange, S.; Mertens, D.; Runte, K.; Kalinowski, J.; Nattkemper, T. W.; Goesmann, A. (2008): ProSE - "Software as a Service" for Quantitative Proteomics (Poster abstract). In: HUPO 7th Annual World Congress.
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018398
Herold, J.; Friedenberger, M.; Bode, M.; Rajpoot, N.; Schubert, W.; Nattkemper, T. W. (2008): Flexible Synapse Detection in Fluorescence Micrographs by Modeling Human Expert Grading. In: Proc. of 2008 IEEE International Symposium on Biomedical Imaging.
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018432
Scherbart, A.; Nattkemper, T. W. (2008): The Diversity of Regression Ensembles Combining Bagging and Random Subspace Method. In: International Conference on Neural Information Processing.
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2007 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018412
Martin, C.; Díaz Solórzano, N. N.; Ontrup, J.; Nattkemper, T. W. (2007): Genome feature exploration using hyperbolic Self-Organizing Maps. In: Proceedings of the 6th International Workshop on Self-Organizing Maps (WSOM 2007). Bielefeld: Bielefeld University.
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2007 | Report | Veröffentlicht | PUB-ID: 2499308
Escoffier, B.; Milanič, M.; Paschos, V. T. (2007): Simple and fast reoptimizations for the Steiner tree problem. DIMACS, Center for Discrete Mathematics and Theoretical Computer Science, NJ.
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2007 | Report | Veröffentlicht | PUB-ID: 2308810 OA
Böcker, S.; Letzel, M.; Lipták, Z.; Pervukhin, A. (2007): Identifying metabolites with integer decomposition techniques, using only their mass spectrometric isotope patterns. Bielefeld: Technical Faculty, Bielefeld University.
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2007 | Bielefelder E-Dissertation | PUB-ID: 2302005 OA
Krause, L. (2007): From single genomes to natural microbial communities : novel methods for the high-throughput analysis of genomic sequences. Bielefeld (Germany): Bielefeld University.
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2007 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2499472
Lozin, V. V.; Milanic, M. (2007): Tree-width and Optimization in Bounded Degree Graphs. In: Proc. 33rd International Workshop on Graph-Theoretic Concepts in Computer Science (WG 2007). (4769). S. 45-54.
PUB | DOI
 
2007 | Bielefelder E-Dissertation | PUB-ID: 2305131 OA
Carvalho Junior, S. A. de (2007): Algorithms for improving the design and production of oligonucleotide microarrays. Bielefeld (Germany): Bielefeld University.
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2007 | Report | Veröffentlicht | PUB-ID: 2308854 OA
Cicalese, F.; Quitzau, J. A. A. (2007): 2-Stage Fault Tolerant Interval Group Testing. Bielefeld: Universität Bielefeld, Technische Fakultät.
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2007 | Report | Veröffentlicht | PUB-ID: 2499449
Kaminski, M.; Lozin, V. V.; Milanic, M. (2007): Recent Developments on Graphs of Bounded Clique-width. Rutgers Center for Operations Research, Rutgers University, NJ.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2499456
Klau, G. W.; Rahmann, S.; Schliep, A.; Vingron, M.; Reinert, K. (2007): Integer linear programming approaches for non-unique probe selection Discrete Applied Mathematics,155:(6-7): 840-856.
PUB | DOI | WoS
 
2007 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 1918828
Schmidt, T.; Stoye, J. (2007): Chapter 12: Gecko and GhostFam - Rigorous and Efficient Gene Cluster Detection in Prokaryotic Genomes. In: Nicholas H. Bergman (Hrsg.): Comparative Genomics, Volume 2. Totowa, NJ: Humana Press Inc. (Methods in Molecular Biology, 396). S. 165-182.
PUB | DOI | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2499284
Cicalese, F.; Damaschke, P.; Tansini, L.; Werth, S. (2007): Overlaps help: Improved bounds for group testing with interval queries Discrete Applied Mathematics,155:(3): 288-299.
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