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419 Publikationen

2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919211
Hufsky, F., Kuchenbecker, L., Jahn, K., Stoye, J., Böcker, S.: Swiftly Computing Center Strings. Proc. of WABI 2010. LNBI. 6293, p. 325-336. (2010).
PUB | DOI | WoS | PubMed | Europe PMC
 
2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919216
Kovac, J., Dias Vieira Braga, M., Stoye, J.: The Problem of Chromosome Reincorporation in DCJ Sorting and Halving. Proc. of Recomb-CG 2010. LNBI. 6398, p. 13-24. (2010).
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1794419
Herold, J., Zhou, L., Abouna, S., Pelengaris, S., Epstein, D., Khan, M., Nattkemper, T.W.: Integrating semantic annotation and information visualization for the analysis of multichannel fluorescence micrographs from pancreatic tissue. Computerized Medical Imaging and Graphics. 34, 446-452 (2010).
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1898025
Dias Vieira Braga, M., Stoye, J.: The Solution Space of Sorting by DCJ. Journal of Computational Biology. 17, 1145-1165 (2010).
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2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919215
Dias Vieira Braga, M., Willing, E., Stoye, J.: Genomic Distance with DCJ and Indels. Proc. of WABI 2010. LNBI. 6293, p. 90-101. (2010).
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1929860
Schwientek, P., Ellinghaus, P., Steppan, S., D'Urso, D., Seewald, M., Kassner, A., Cebulla, R., Schulte-Eistrup, S., Morshuis, M., Roefe, D., El Banayosy, A., Koerfer, R., Milting, H.: Global gene expression analysis in nonfailing and failing myocardium pre- and postpulsatile and nonpulsatile ventricular assist device support. PHYSIOLOGICAL GENOMICS. 42, 397-405 (2010).
PUB | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1930110
Joseph, B., Schneiker-Bekel, S., Schramm-Glueck, A., Blom, J., Claus, H., Linke, B., Schwarz, R.F., Becker, A., Goesmann, A., Frosch, M., Schoen, C.: Comparative Genome Biology of a Serogroup B Carriage and Disease Strain Supports a Polygenic Nature of Meningococcal Virulence. JOURNAL OF BACTERIOLOGY. 192, 5363-5377 (2010).
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589663
Bergeron, A., Mixtacki, J., Stoye, J.: A New Linear Time Algorithm to Compute the Genomic Distance via the Double Cut and Join Distance. Theoretical Computer Science. 410, 5300-5316 (2009).
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2427059
Escoffier, B., Milanič, M., Paschos, V.T.: Simple and fast reoptimizations for the Steiner tree problem. Algorithmic Operations Research. 4, 86-94 (2009).
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2308924
Cicalese, F., Milanic, M.: Competitive evaluation of threshold functions in the priced information model. Annals of Operations Research. 188, 111-132 (2009).
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2426437
Bunkowski, A., Bödeker, B., Bader, S., Westhoff, M., Litterst, P., Baumbach, J.I.: MCC/IMS signals in human breath related to sarcoidosis-results of a feasibility study using an automated peak finding procedure. Journal of Breath Research. 3, 046001 (2009).
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2426487
Böcker, S., Lipták, Z., Pervukhin, A., Letzel, M.C.: SIRIUS: decomposing isotope patterns for metabolite identification. Bioinformatics. 25, 218-224 (2009).
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2009 | Preprint | Veröffentlicht | PUB-ID: 2426653
Cicalese, F., Jacobs, T., Laber, E.S., Molinaro, M.: On the Complexity of Searching in Trees: Average-case Minimization. (2009).
PUB | arXiv
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2426660
Cicalese, F., Manne, F., Xin, Q.: Faster Deterministic Communication in Radio Networks. Algorithmica. 54, 226-242 (2009).
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2427118
Engelmann, J.A., Rahmann, S., Wolf, M., Schultz, J., Fritzilas, E., Kneitz, S., Dandekar, T., Müller, T.: Modeling cross-hybridization on phylogenetic DNA microarrays increases the detection power of closely related species. Molecular Ecology Resources. 9, 83-93 (2009).
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2009 | Bielefelder E-Dissertation | PUB-ID: 2305073 OA
Oehm, S.: Comparing organisms on the level of metabolism. Bielefeld University, Bielefeld (Germany) (2009).
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2009 | Bielefelder E-Dissertation | PUB-ID: 2301318 OA
Neuweger, H.: MeltDB : a software platform for the analysis and integration of metabolomics experiment data. Bielefeld University, Bielefeld (Germany) (2009).
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2009 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2659405
Feijão, P., Meidanis, J.: SCJ: A Variant of Breakpoint Distance for Which Sorting, Genome Median and Genome Halving Problems Are Easy. In: Salzberg, S.L. and Warnow, T. (eds.) Algorithms in Bioinformatics. Lecture Notes in Computer Science. 5724, p. 85-96. (2009).
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2427161
Kamiński, M., Lozin, V.V., Milanič, M.: Recent developments on graphs of bounded clique-width. Discrete Appl. Math. 157, 2747-2761 (2009).
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2427173
Kamiński, M., Medvedev, P., Milanič, M.: On the plane-width of graphs. Electronic Notes in Discrete Mathematics. 34, 633-637 (2009).
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2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919206
Dias Vieira Braga, M., Stoye, J.: Counting All DCJ Sorting Scenarios. Proc. of Recomb-CG 2009. LNBI. 5817, p. 36-47. (2009).
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2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2426605
Cicalese, F., Fici, G., Lipták, Z.: Searching for Jumbled Patterns in Strings. Proc. of the Prague Stringology Conference 2009. p. 105-117. (2009).
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2009 | Bielefelder E-Dissertation | PUB-ID: 2303240 OA
Gagie, T.: New algorithms and lower bounds for sequential-access data compression. Bielefeld University, Bielefeld (Germany) (2009).
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2009 | Bielefelder E-Dissertation | PUB-ID: 2302608 OA
Herms, I.: Probabilistic arithmetic automata : applications of a stochastic computational framework in biological sequence analysis. Bielefeld University, Bielefeld (Germany) (2009).
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2406118
Välimäki, N., Mäkinen, V., Gerlach, W., Dixit, K.: Engineering a compressed suffix tree implementation. Journal of Experimental Algorithmics (JEA). 14, 4.2-2:4.23 (2009).
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2009 | Bielefelder E-Dissertation | PUB-ID: 2304745 OA
Fritzilas, E.: Combinatorial aspects of low-rank matrix factorization and two applications in bioinformatics. Bielefeld University, Bielefeld (Germany) (2009).
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2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919207
Blin, G., Stoye, J.: Finding Nested Common Intervals Efficiently. Proc. of Recomb-CG 2009. LNBI. 5817, p. 59-69. (2009).
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2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018390
Herold, J., Abouna, S., Zhou, L., Pelengaris, S., Epstein, D.B.A., Khan, M., Nattkemper, T.W.: A way towards analyzing high-content bioimage data by means of semantic annotation and visual data mining. SPIE Medical Imaging. (2009).
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2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018422
Ontrup, J., Ehnert, N., Bergmann, M., Nattkemper, T.W.: BIIGLE - Web 2.0 enabled labelling and exploring of images from the Arctic deep-sea observatory HAUSGARTEN. OCEANS 2009 - Europe. Bremen (2009).
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2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018427
Qureshi, H., Rajpoot, N., Nattkemper, T.W., Hans, V.: A Robust Adaptive Wavelet-based Method for Classification of Meningioma Histology Images. MICCAI«2009 Workshop on Optical Tissue Image Analysis in Microscopy, Histology, and Endoscopy. (2009).
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783187 OA
Blom, J., Albaum, S., Doppmeier, D., Pühler, A., Vorhölter, F.-J., Zakrzewski, M., Goesmann, A.: EDGAR: a software framework for the comparative analysis of prokaryotic genomes. BMC Bioinformatics. 10, : 154 (2009).
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1636062
Ontrup, J., Ritter, H., Scholz, S., Wagner, R.: Detecting, Assessing, and Monitoring Relevant Topics in Virtual Information Environments. IEEE Transactions on Knowledge and Data Engineering. 21, 415-427 (2009).
PUB | DOI | WoS
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1898137
Jahn, K., Stoye, J.: Approximative Gencluster und ihre Anwendung in der komparativen Genomik. Informatik-Spektrum. 32, 288-300 (2009).
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2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1893884
Husemann, P., Stoye, J.: Phylogenetic Comparative Assembly. Proc. of WABI 2009. LNBI. 5724, p. 145-156. (2009).
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635314 OA
Diaz, N.N., Krause, L., Goesmann, A., Niehaus, K., Nattkemper, T.W.: TACOA - Taxonomic classification of environmental genomic fragments using a kernelized nearest neighbor approach. BMC Bioinformatics. 10, 56 (2009).
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635321 OA
Dondrup, M., Albaum, S., Griebel, T., Henckel, K., Jünemann, S., Kahlke, T., Kleindt, C.K., Kuester, H., Linke, B., Mertens, D., Mittard-Runte, V., Neuweger, H., Runte, K.J., Tauch, A., Tille, F., Pühler, A., Goesmann, A.: EMMA 2-A MAGE-compliant system for the collaborative analysis and integration of microarray data. BMC Bioinformatics. 10, : 50 (2009).
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1591507
Stoye, J., Wittler, R.: A Unified Approach for Reconstructing Ancient Gene Clusters. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 6, 387-400 (2009).
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589531
Albaum, S., Neuweger, H., Fraenzel, B., Lange, S., Mertens, D., Troetschel, C., Wolters, D., Kalinowski, J., Nattkemper, T.W., Goesmann, A.: Qupe-a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments. Bioinformatics. 25, 3128-3134 (2009).
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1590204
Brudno, M., Medvedev, P., Stoye, J., De La Vega, F.M.: A report on the 2009 SIG on short read sequencing and algorithms (Short-SIG). BIOINFORMATICS. 25, 2863-2864 (2009).
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589098 OA
Gerlach, W., Jünemann, S., Tille, F., Goesmann, A., Stoye, J.: WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads. BMC Bioinformatics. 10, 430 (2009).
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588783
Purser, A., Bergmann, M., Ontrup, J., Nattkemper, T.W.: Use of machine-learning algorithms for the automated detection of cold-water coral habitats: a pilot study. Marine Ecology Progress Series. 397, 241-251 (2009).
PUB | DOI | WoS
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1898105
Böcker, S., Jahn, K., Mixtacki, J., Stoye, J.: Computation of Median Gene Clusters. Journal of Computational Biology. 16, 1085-1099 (2009).
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1591319
Hoffmann, N., Stoye, J.: ChromA: signal-based retention time alignment for chromatography-mass spectrometry data. Bioinformatics. 25, 2080-2081 (2009).
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588760 OA
Dias Vieira Braga, M., Gautier, C., Sagot, M.-F.: An asymmetric approach to preserve common intervals while sorting by reversals. Algorithms for Molecular Biology. 4, 16 (2009).
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919209
Medvedev, P., Stoye, J.: Rearrangement Models and Single-Cut Operations. Comparative Genomics : International Workshop, RECOMB-CG 2009, Budapest, Hungary, September 27-29, 2009. Proceedings. Lecture Notes in Computer Science. 5817, p. 84-97. Springer, Berlin, Heidelberg (2009).
PUB | DOI
 
2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018440
Schoening, T., Ehnert, N., Ontrup, J., Nattkemper, T.W.: BIIGLE Tools - A Web 2.0 Approach for Visual Bioimage Database Mining. IV 09 - Intl. Conference on Information Visualization. (2009).
PUB | DOI
 
2009 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 1918945
Stoye, J.: Computational Short Read Metagenomics. Presented at the JOBIM 2009, Nantes, France (2009).
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634447
Bekel, T., Henckel, K., Küster, H., Meyer, F., Mittard-Runte, V., Neuweger, H., Paarmann, D., Rupp, O., Zakrzewski, M., Pühler, A., Stoye, J., Goesmann, A.: The Sequence Analysis and Management System - SAMS-2.0: Data management and sequence analysis adapted to changing requirements from traditional sanger sequencing to ultrafast sequencing technologies. Journal of Biotechnology. 140, 3-12 (2009).
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634615
Zeschnigk, M., Martin, M., Betzl, G., Kalbe, A., Sirsch, C., Buiting, K., Gross, S., Fritzilas, E., Frey, B., Rahmann, S., Horsthemke, B.: Massive parallel bisulfite sequencing of CG-rich DNA fragments reveals that methylation of many X-chromosomal CpG islands in female blood DNA is incomplete. HUMAN MOLECULAR GENETICS. 18, 1439-1448 (2009).
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2427252
Alekseev, V.E., Lozin, V.V., Malyshev, D., Milanič, M.: The Maximum Independent Set Problem in Planar Graphs. Proc. MFCS 2008. p. 96-107. (2008).
PUB | DOI
 
2008 | Bielefelder E-Dissertation | PUB-ID: 2306324 OA
Baumbach, J.: CoryneRegNet : a reference database and analysis platform for corynebacterial gene regulatory networks. Bielefeld University, Bielefeld (Germany) (2008).
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2008 | Bielefelder E-Dissertation | PUB-ID: 2302950 OA
Zakotnik, J.: The double cut and join operation and its applications to genome rearrangements. Bielefeld University, Bielefeld (Germany) (2008).
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2659345
Oliveira, M.T., Barau, J.G., Junqueira, A.C.M., Feijão, P., Rosa, A.C. da, Abreu, C.F., Azeredo-Espin, A.M.L., Lessinger, A.C.: Structure and evolution of the mitochondrial genomes of Haematobia irritans and Stomoxys calcitrans: The Muscidae (Diptera: Calyptratae) perspective. Molecular Phylogenetics and Evolution. 48, 850-857 (2008).
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2308903
Cicalese, F., Laber, E.S.: Function Evaluation Via Linear Programming in the Priced Information Model. Proc. ICALP 2008. p. 173-185. (2008).
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2008 | Report | Veröffentlicht | PUB-ID: 2308927 OA
Cicalese, F., Milanivc, M.: On Parsimony Haplotyping. Forschungsberichte der Technischen Fakultät, Abteilung Informationstechnik / Universität Bielefeld. Universität Bielefeld, Technische Fakultät, Bielefeld (2008).
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2308974
Fritzilas, E., Rios-Solis, Y.A., Rahmann, S.: Structural Identifiability in Low-Rank Matrix Factorization. In: Hu, X. and Wang, J. (eds.) Computing and Combinatorics 14th Annual International Conference, COCOON 2008 Dalian, China, June 27-29, 2008 Proceedings. Lecture Notes in Computer Science, 5092. p. 140-148. Springer, Berlin u.a. (2008).
PUB | DOI
 
2008 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2499103
Milanivc, M., Monnot, J.: The Complexity of the Exact Weighted Independent Set Problem. Combinatorial optimization and theoretical computer science: interfaces and perspectives : 30th anniversary of the LAMSADE. p. 393-432. (2008).
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2499108
Mixtacki, J.: Genome Halving under DCJ Revisited. In: Hu, X. and Wang, J. (eds.) Computing and Combinatorics. 14th Annual International Conference, COCOON 2008 Dalian, China, June 27-29, 2008 Proceedings. Lecture Notes in Computer Science, 5092. p. 276-286. (2008).
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919198
Quitzau, J.A.A., Stoye, J.: Detecting Repeat Families in Incompletely Sequenced Genomes. Proc. of WABI 2008. LNBI. 5251, p. 342-353. (2008).
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2498846
Boyar, J., Medvedev, P.: The relative worst order ratio applied to seat reservation. ACM Transactions on Algorithms. 4, 1-22 (2008).
PUB | DOI | WoS
 
2008 | Report | Veröffentlicht | PUB-ID: 2499065
Cicalese, F., Milanic, M.: Computing with Priced Information: game trees and the value dependent cost model. Technische Fakultät, Universität Bielefeld (2008).
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2499072
Herms, I., Rahmann, S.: Computing Alignment Seed Sensitivity with Probabilistic Arithmetic Automata. In: Crandall, K.A. and Lagergren, J. (eds.) Algorithms in Bioinformatics: 8th International Workshop, WABI 2008, Karlsruhe, Germany, September 15-19, 2008. Proceedings. Lecture Notes in Computer Science, 5251. p. 318-329. Springer, Berlin u.a. (2008).
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2008 | Report | Veröffentlicht | PUB-ID: 2308930 OA
Cicalese, F., Milanivc, M.: Computing with Priced Information: game trees and the value dependent cost model. Forschungsberichte der Technischen Fakultät, Abteilung Informationstechnik / Universität Bielefeld. Universität Bielefeld, Technische Fakultät, Bielefeld (2008).
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2499098
Lozin, V.V., Milanic, M.: A polynomial algorithm to find an independent set of maximum weight in a fork-free graph. J. Discr. Alg. 6, 595-604 (2008).
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2008 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2499120
Rahmann, S., Klau, G.W.: Integer Linear Programming Techniques for Discovering Approximate Gene Clusters. In: Mǎndoiu, I.I. and Zelikovsky, A. (eds.) Bioinformatics Algorithms: Techniques and Applications. p. 203-222. Wiley Interscience (2008).
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2008 | Report | PUB-ID: 1970459 OA
Quitzau, J.A.A., Stoye, J.: A space efficient representation for sparse de Bruijn subgraphs. Forschungsberichte der Technischen Fakultät, Abteilung Informationstechnik / Universität Bielefeld. Technische Fakultät der Universität Bielefeld, Bielefeld (2008).
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2008 | Report | PUB-ID: 1970461 OA
Ejaz, T., Rahmann, S., Stoye, J.: Online Abelian Pattern Matching. Forschungsberichte der Technischen Fakultät, Abteilung Informationstechnik / Universität Bielefeld. Technische Fakultät der Universität Bielefeld, Bielefeld (2008).
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1636699
Neuweger, H., Albaum, S., Dondrup, M., Persicke, M., Watt, T., Niehaus, K., Stoye, J., Goesmann, A.: MeltDB: a software platform for the analysis and integration of metabolomics experiment data. Bioinformatics. 24, 2726-2732 (2008).
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Bielefelder E-Dissertation | PUB-ID: 2305571 OA
Bannert, C.: Flexible protein annotation with sequence- and secondary structure information. Bielefeld University, Bielefeld (Germany) (2008).
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919192
Böcker, S., Jahn, K., Mixtacki, J., Stoye, J.: Computation of Median Gene Clusters. Proc. of RECOMB 2008. LNBI. 4955, p. 331-345. (2008).
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919200
Bergeron, A., Mixtacki, J., Stoye, J.: On Computing the Breakpoint Reuse Rate in Rearrangement Scenarios. Proc. of Recomb-CG 2008. LNBI. 5267, p. 226-240. (2008).
PUB | DOI
 
2008 | Lexikoneintrag | Veröffentlicht | PUB-ID: 1918834
Stoye, J.: Suffix Tree Construction in RAM (1997; Farach-Colton). In: Kao, M.-Y. (ed.) Encyclopedia of Algorithms. p. 925-928. Springer Verlag (2008).
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018405
Loyek, C., Woermann, F.G., Nattkemper, T.W.: Detection of Focal Cortical Dysplasia in MRI Using Textural Features. Proceedings of BVM 2008. p. 432-436. Springer Verlag, Berlin, Heidelberg (2008).
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1636280 OA
Timm, W., Scherbart, A., Boecker, S., Kohlbacher, O., Nattkemper, T.W.: Peak intensity prediction in MALDI-TOF mass spectrometry: A machine learning study to support quantitative proteomics. BMC Bioinformatics. 9, 443 (2008).
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592257
Schoen, C., Blom, J., Claus, H., Schramm-Glueck, A., Brandt, P., Mueller, T., Goesmann, A., Joseph, B., Konietzny, S., Kurzai, O., Schmitt, C., Friedrich, T., Linke, B., Vogel, U., Frosch, M.: Whole-genome comparison of disease and carriage strains provides insights into virulence evolution in Neisseria meningitidis. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 105, 3473-3478 (2008).
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592737
Boecker, S., Lipták, Z., Martin, M., Pervukhin, A., Sudek, H.: DECOMP - from interpreting mass spectrometry peaks to solving the money changing problem. BIOINFORMATICS. 24, 591-593 (2008).
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1587304
Hazelhurst, S., Hide, W., Lipták, Z., Nogueira, R., Starfield, R.: An overview of the wcd EST clustering tool. BIOINFORMATICS. 24, 1542-1546 (2008).
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1587078
Schürmann, K.-B., Stoye, J.: Counting suffix arrays and strings. THEORETICAL COMPUTER SCIENCE. 395, 220-234 (2008).
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1587052
Martin, C., Diaz, N.N., Ontrup, J., Nattkemper, T.W.: Hyperbolic SOM-based clustering of DNA fragment features for taxonomic visualization and classification. Bioinformatics. 24, 1568-1574 (2008).
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1586009
Krause, L., Diaz, N.N., Edwards, R.A., Gartemann, K.-H., Krömeke, H., Neuweger, H., Pühler, A., Runte, K.J., Schlüter, A., Stoye, J., Szczepanowski, R., Tauch, A., Goesmann, A.: Taxonomic composition and gene content of a methane-producing microbial community isolated from a biogas reactor. JOURNAL OF BIOTECHNOLOGY. 136, 91-101 (2008).
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1586785 OA
Oehm, S., Gilbert, D., Tauch, A., Stoye, J., Goesmann, A.: Comparative Pathway Analyzer - a web server for comparative analysis, clustering and visualization of metabolic networks in multiple organisms. NUCLEIC ACIDS RESEARCH. 36, W433-W437 (2008).
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585939
Tauch, A., Schneider, J., Szczepanowski, R., Tilker, A., Viehöver, P., Gartemann, K.-H., Arnold, W., Blom, J., Brinkrolf, K., Brune, I., Goetker, S., Weisshaar, B., Goesmann, A., Droege, M., Pühler, A.: Ultrafast pyrosequencing of Corynebacterium kroppenstedtii DSM44385 revealed insights into the physiology of a lipophilic corynebacterium that lacks mycolic acids. Journal of Biotechnology. 136, 22-30 (2008).
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783364 OA
Krause, L., Diaz, N.N., Goesmann, A., Kelley, S., Nattkemper, T.W., Rohwer, F., Edwards, R.A., Stoye, J.: Phylogenetic classification of short environmental DNA fragments. Nucleic Acids Research. 36, 2230-2239 (2008).
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919195
Bergeron, A., Mixtacki, J., Stoye, J.: HP Distance via Double Cut and Join Distance. Combinatorial Pattern Matching. 19th Annual Symposium, CPM 2008, Pisa, Italy, June 18-20, 2008 Proceedings. Lecture Notes in Computer Science, 5029. p. 56-68. (2008).
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018409
Martin, C., Nattkemper, T.W.: A Tree Index to Support Clustering Based Exploratory Data Analysis. Bioinformatics Research and Development : Second International Conference, BIRD 2008 Vienna, Austria, July 7-9, 2008 Proceedings. Communications in Computer and Information Science. 13, p. 1-15. Springer, Berlin, Heidelberg (2008).
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018435
Scherbart, A., Timm, W., Böcker, S., Nattkemper, T.W.: Improved Mass Spectrometry Peak Intensity Prediction by Adaptive Feature Weighting. International Conference on Neural Information Processing. Auckland, New Zealand (2008).
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018381
Albaum, S., Neuweger, H., Lange, S., Mertens, D., Runte, K., Kalinowski, J., Nattkemper, T.W., Goesmann, A.: ProSE - "Software as a Service" for Quantitative Proteomics (Poster abstract). HUPO 7th Annual World Congress. (2008).
PUB
 
2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018398
Herold, J., Friedenberger, M., Bode, M., Rajpoot, N., Schubert, W., Nattkemper, T.W.: Flexible Synapse Detection in Fluorescence Micrographs by Modeling Human Expert Grading. Proc. of 2008 IEEE International Symposium on Biomedical Imaging. (2008).
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018432
Scherbart, A., Nattkemper, T.W.: The Diversity of Regression Ensembles Combining Bagging and Random Subspace Method. International Conference on Neural Information Processing. (2008).
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2007 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018412
Martin, C., Díaz Solórzano, N.N., Ontrup, J., Nattkemper, T.W.: Genome feature exploration using hyperbolic Self-Organizing Maps. Proceedings of the 6th International Workshop on Self-Organizing Maps (WSOM 2007). Bielefeld University, Bielefeld (2007).
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2007 | Report | Veröffentlicht | PUB-ID: 2499308
Escoffier, B., Milanič, M., Paschos, V.T.: Simple and fast reoptimizations for the Steiner tree problem. DIMACS, Center for Discrete Mathematics and Theoretical Computer Science, NJ (2007).
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2007 | Report | Veröffentlicht | PUB-ID: 2308810 OA
Böcker, S., Letzel, M., Lipták, Z., Pervukhin, A.: Identifying metabolites with integer decomposition techniques, using only their mass spectrometric isotope patterns. Forschungsberichte der Technischen Fakultät, Abteilung Informationstechnik / Universität Bielefeld. Technical Faculty, Bielefeld University, Bielefeld (2007).
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2007 | Bielefelder E-Dissertation | PUB-ID: 2302005 OA
Krause, L.: From single genomes to natural microbial communities : novel methods for the high-throughput analysis of genomic sequences. Bielefeld University, Bielefeld (Germany) (2007).
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2007 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2499472
Lozin, V.V., Milanic, M.: Tree-width and Optimization in Bounded Degree Graphs. Proc. 33rd International Workshop on Graph-Theoretic Concepts in Computer Science (WG 2007). 4769, p. 45-54. (2007).
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2007 | Bielefelder E-Dissertation | PUB-ID: 2305131 OA
Carvalho Junior, S.A. de: Algorithms for improving the design and production of oligonucleotide microarrays. Bielefeld University, Bielefeld (Germany) (2007).
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2007 | Report | Veröffentlicht | PUB-ID: 2308854 OA
Cicalese, F., Quitzau, J.A.A.: 2-Stage Fault Tolerant Interval Group Testing. Forschungsberichte der Technischen Fakultät, Abteilung Informationstechnik / Universität Bielefeld. Universität Bielefeld, Technische Fakultät, Bielefeld (2007).
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2007 | Report | Veröffentlicht | PUB-ID: 2499449
Kaminski, M., Lozin, V.V., Milanic, M.: Recent Developments on Graphs of Bounded Clique-width. Rutgers Center for Operations Research, Rutgers University, NJ (2007).
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2499456
Klau, G.W., Rahmann, S., Schliep, A., Vingron, M., Reinert, K.: Integer linear programming approaches for non-unique probe selection. Discrete Applied Mathematics. 155, 840-856 (2007).
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2007 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 1918828
Schmidt, T., Stoye, J.: Chapter 12: Gecko and GhostFam - Rigorous and Efficient Gene Cluster Detection in Prokaryotic Genomes. In: Bergman, N.H. (ed.) Comparative Genomics, Volume 2. Methods in Molecular Biology. 396, p. 165-182. Humana Press Inc., Totowa, NJ (2007).
PUB | DOI | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2499284
Cicalese, F., Damaschke, P., Tansini, L., Werth, S.: Overlaps help: Improved bounds for group testing with interval queries. Discrete Applied Mathematics. 155, 288-299 (2007).
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