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414 Publikationen

2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1929860
Schwientek, P., Ellinghaus, P., Steppan, S., D'Urso, D., Seewald, M., Kassner, A., Cebulla, R., Schulte-Eistrup, S., Morshuis, M., Roefe, D., et al. (2010). Global gene expression analysis in nonfailing and failing myocardium pre- and postpulsatile and nonpulsatile ventricular assist device support. PHYSIOLOGICAL GENOMICS 42, 397-405.
PUB | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1930110
Joseph, B., Schneiker-Bekel, S., Schramm-Glueck, A., Blom, J., Claus, H., Linke, B., Schwarz, R. F., Becker, A., Goesmann, A., Frosch, M., et al. (2010). Comparative Genome Biology of a Serogroup B Carriage and Disease Strain Supports a Polygenic Nature of Meningococcal Virulence. JOURNAL OF BACTERIOLOGY 192, 5363-5377.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589663
Bergeron, A., Mixtacki, J., and Stoye, J. (2009). A New Linear Time Algorithm to Compute the Genomic Distance via the Double Cut and Join Distance. Theoretical Computer Science 410, 5300-5316.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2427059
Escoffier, B., Milanič, M., and Paschos, V. T. (2009). Simple and fast reoptimizations for the Steiner tree problem. Algorithmic Operations Research 4, 86-94.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2308924
Cicalese, F., and Milanic, M. (2009). Competitive evaluation of threshold functions in the priced information model. Annals of Operations Research 188, 111-132.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2426437
Bunkowski, A., Bödeker, B., Bader, S., Westhoff, M., Litterst, P., and Baumbach, J. I. (2009). MCC/IMS signals in human breath related to sarcoidosis-results of a feasibility study using an automated peak finding procedure. Journal of Breath Research 3, 046001.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2426487
Böcker, S., Lipták, Z., Pervukhin, A., and Letzel, M. C. (2009). SIRIUS: decomposing isotope patterns for metabolite identification. Bioinformatics 25, 218-224.
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2009 | Preprint | Veröffentlicht | PUB-ID: 2426653
Cicalese, F., Jacobs, T., Laber, E. S., and Molinaro, M. (2009). On the Complexity of Searching in Trees: Average-case Minimization.
PUB | arXiv
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2426660
Cicalese, F., Manne, F., and Xin, Q. (2009). Faster Deterministic Communication in Radio Networks. Algorithmica 54, 226-242.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2427118
Engelmann, J. A., Rahmann, S., Wolf, M., Schultz, J., Fritzilas, E., Kneitz, S., Dandekar, T., and Müller, T. (2009). Modeling cross-hybridization on phylogenetic DNA microarrays increases the detection power of closely related species. Molecular Ecology Resources 9, 83-93.
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2009 | Bielefelder E-Dissertation | PUB-ID: 2305073 OA
Oehm, S. (2009). Comparing organisms on the level of metabolism. Bielefeld (Germany): Bielefeld University.
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2009 | Bielefelder E-Dissertation | PUB-ID: 2301318 OA
Neuweger, H. (2009). MeltDB : a software platform for the analysis and integration of metabolomics experiment data. Bielefeld (Germany): Bielefeld University.
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2009 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2659405
Feijão, P., and Meidanis, J. (2009). “SCJ: A Variant of Breakpoint Distance for Which Sorting, Genome Median and Genome Halving Problems Are Easy” in Algorithms in Bioinformatics, Salzberg, S. L., and Warnow, T. eds. Lecture Notes in Computer Science, vol. 5724, 85-96.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2427161
Kamiński, M., Lozin, V. V., and Milanič, M. (2009). Recent developments on graphs of bounded clique-width. Discrete Appl. Math. 157, 2747-2761.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2427173
Kamiński, M., Medvedev, P., and Milanič, M. (2009). On the plane-width of graphs. Electronic Notes in Discrete Mathematics 34, 633-637.
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2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919206
Dias Vieira Braga, M., and Stoye, J. (2009). “Counting All DCJ Sorting Scenarios” in Proc. of Recomb-CG 2009 LNBI, vol. 5817, 36-47.
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2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2426605
Cicalese, F., Fici, G., and Lipták, Z. (2009). “Searching for Jumbled Patterns in Strings” in Proc. of the Prague Stringology Conference 2009 105-117.
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2009 | Bielefelder E-Dissertation | PUB-ID: 2303240 OA
Gagie, T. (2009). New algorithms and lower bounds for sequential-access data compression. Bielefeld (Germany): Bielefeld University.
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2009 | Bielefelder E-Dissertation | PUB-ID: 2302608 OA
Herms, I. (2009). Probabilistic arithmetic automata : applications of a stochastic computational framework in biological sequence analysis. Bielefeld (Germany): Bielefeld University.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2406118
Välimäki, N., Mäkinen, V., Gerlach, W., and Dixit, K. (2009). Engineering a compressed suffix tree implementation. Journal of Experimental Algorithmics (JEA) 14, 4.2-2:4.23.
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2009 | Bielefelder E-Dissertation | PUB-ID: 2304745 OA
Fritzilas, E. (2009). Combinatorial aspects of low-rank matrix factorization and two applications in bioinformatics. Bielefeld (Germany): Bielefeld University.
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2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919207
Blin, G., and Stoye, J. (2009). “Finding Nested Common Intervals Efficiently” in Proc. of Recomb-CG 2009 LNBI, vol. 5817, 59-69.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018390
Herold, J., Abouna, S., Zhou, L., Pelengaris, S., Epstein, D. B. A., Khan, M., and Nattkemper, T. W. (2009). “A way towards analyzing high-content bioimage data by means of semantic annotation and visual data mining” in SPIE Medical Imaging.
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2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018422
Ontrup, J., Ehnert, N., Bergmann, M., and Nattkemper, T. W. (2009). “BIIGLE - Web 2.0 enabled labelling and exploring of images from the Arctic deep-sea observatory HAUSGARTEN” in OCEANS 2009 - Europe (Bremen).
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2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018427
Qureshi, H., Rajpoot, N., Nattkemper, T. W., and Hans, V. (2009). “A Robust Adaptive Wavelet-based Method for Classification of Meningioma Histology Images” in MICCAI«2009 Workshop on Optical Tissue Image Analysis in Microscopy, Histology, and Endoscopy.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783187 OA
Blom, J., Albaum, S., Doppmeier, D., Pühler, A., Vorhölter, F. - J., Zakrzewski, M., and Goesmann, A. (2009). EDGAR: a software framework for the comparative analysis of prokaryotic genomes. BMC Bioinformatics 10:154.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1636062
Ontrup, J., Ritter, H., Scholz, S., and Wagner, R. (2009). Detecting, Assessing, and Monitoring Relevant Topics in Virtual Information Environments. IEEE Transactions on Knowledge and Data Engineering 21, 415-427.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1898137
Jahn, K., and Stoye, J. (2009). Approximative Gencluster und ihre Anwendung in der komparativen Genomik. Informatik-Spektrum 32, 288-300.
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2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1893884
Husemann, P., and Stoye, J. (2009). “Phylogenetic Comparative Assembly” in Proc. of WABI 2009 LNBI, vol. 5724, 145-156.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635314 OA
Diaz, N. N., Krause, L., Goesmann, A., Niehaus, K., and Nattkemper, T. W. (2009). TACOA - Taxonomic classification of environmental genomic fragments using a kernelized nearest neighbor approach. BMC Bioinformatics 10, 56.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635321 OA
Dondrup, M., Albaum, S., Griebel, T., Henckel, K., Jünemann, S., Kahlke, T., Kleindt, C. K., Kuester, H., Linke, B., Mertens, D., et al. (2009). EMMA 2-A MAGE-compliant system for the collaborative analysis and integration of microarray data. BMC Bioinformatics 10:50.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1591507
Stoye, J., and Wittler, R. (2009). A Unified Approach for Reconstructing Ancient Gene Clusters. IEEE/ACM Transactions on Computational Biology and Bioinformatics 6, 387-400.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589098 OA
Gerlach, W., Jünemann, S., Tille, F., Goesmann, A., and Stoye, J. (2009). WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads. BMC Bioinformatics 10, 430.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589531
Albaum, S., Neuweger, H., Fraenzel, B., Lange, S., Mertens, D., Troetschel, C., Wolters, D., Kalinowski, J., Nattkemper, T. W., and Goesmann, A. (2009). Qupe-a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments. Bioinformatics 25, 3128-3134.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1590204
Brudno, M., Medvedev, P., Stoye, J., and De La Vega, F. M. (2009). A report on the 2009 SIG on short read sequencing and algorithms (Short-SIG). BIOINFORMATICS 25, 2863-2864.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588783
Purser, A., Bergmann, M., Ontrup, J., and Nattkemper, T. W. (2009). Use of machine-learning algorithms for the automated detection of cold-water coral habitats: a pilot study. Marine Ecology Progress Series 397, 241-251.
PUB | DOI | WoS
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1898105
Böcker, S., Jahn, K., Mixtacki, J., and Stoye, J. (2009). Computation of Median Gene Clusters. Journal of Computational Biology 16, 1085-1099.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1591319
Hoffmann, N., and Stoye, J. (2009). ChromA: signal-based retention time alignment for chromatography-mass spectrometry data. Bioinformatics 25, 2080-2081.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588760 OA
Dias Vieira Braga, M., Gautier, C., and Sagot, M. - F. (2009). An asymmetric approach to preserve common intervals while sorting by reversals. Algorithms for Molecular Biology 4, 16.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919209
Medvedev, P., and Stoye, J. (2009). “Rearrangement Models and Single-Cut Operations” in Comparative Genomics : International Workshop, RECOMB-CG 2009, Budapest, Hungary, September 27-29, 2009. Proceedings Lecture Notes in Computer Science, vol. 5817, (Berlin, Heidelberg: Springer), 84-97.
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2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018440
Schoening, T., Ehnert, N., Ontrup, J., and Nattkemper, T. W. (2009). “BIIGLE Tools - A Web 2.0 Approach for Visual Bioimage Database Mining” in IV 09 - Intl. Conference on Information Visualization.
PUB | DOI
 
2009 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 1918945
Stoye, J. (2009).“Computational Short Read Metagenomics”. Presented at the JOBIM 2009, Nantes, France.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634447
Bekel, T., Henckel, K., Küster, H., Meyer, F., Mittard-Runte, V., Neuweger, H., Paarmann, D., Rupp, O., Zakrzewski, M., Pühler, A., et al. (2009). The Sequence Analysis and Management System - SAMS-2.0: Data management and sequence analysis adapted to changing requirements from traditional sanger sequencing to ultrafast sequencing technologies. Journal of Biotechnology 140, 3-12.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634615
Zeschnigk, M., Martin, M., Betzl, G., Kalbe, A., Sirsch, C., Buiting, K., Gross, S., Fritzilas, E., Frey, B., Rahmann, S., et al. (2009). Massive parallel bisulfite sequencing of CG-rich DNA fragments reveals that methylation of many X-chromosomal CpG islands in female blood DNA is incomplete. HUMAN MOLECULAR GENETICS 18, 1439-1448.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2427252
Alekseev, V. E., Lozin, V. V., Malyshev, D., and Milanič, M. (2008). “The Maximum Independent Set Problem in Planar Graphs” in Proc. MFCS 2008 96-107.
PUB | DOI
 
2008 | Bielefelder E-Dissertation | PUB-ID: 2306324 OA
Baumbach, J. (2008). CoryneRegNet : a reference database and analysis platform for corynebacterial gene regulatory networks. Bielefeld (Germany): Bielefeld University.
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2008 | Bielefelder E-Dissertation | PUB-ID: 2302950 OA
Zakotnik, J. (2008). The double cut and join operation and its applications to genome rearrangements. Bielefeld (Germany): Bielefeld University.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2659345
Oliveira, M. T., Barau, J. G., Junqueira, A. C. M., Feijão, P., Rosa, A. C. da, Abreu, C. F., Azeredo-Espin, A. M. L., and Lessinger, A. C. (2008). Structure and evolution of the mitochondrial genomes of Haematobia irritans and Stomoxys calcitrans: The Muscidae (Diptera: Calyptratae) perspective. Molecular Phylogenetics and Evolution 48, 850-857.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2308903
Cicalese, F., and Laber, E. S. (2008). “Function Evaluation Via Linear Programming in the Priced Information Model” in Proc. ICALP 2008 173-185.
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2008 | Report | Veröffentlicht | PUB-ID: 2308927 OA
Cicalese, F., and Milanivc, M. (2008). On Parsimony Haplotyping. Forschungsberichte der Technischen Fakultät, Abteilung Informationstechnik / Universität Bielefeld, Bielefeld: Universität Bielefeld, Technische Fakultät.
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2308974
Fritzilas, E., Rios-Solis, Y. A., and Rahmann, S. (2008). “Structural Identifiability in Low-Rank Matrix Factorization” in Computing and Combinatorics 14th Annual International Conference, COCOON 2008 Dalian, China, June 27-29, 2008 Proceedings, Hu, X., and Wang, J. eds. Lecture Notes in Computer Science, 5092 (Berlin u.a.: Springer), 140-148.
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2008 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2499103
Milanivc, M., and Monnot, J. (2008). “The Complexity of the Exact Weighted Independent Set Problem” in Combinatorial optimization and theoretical computer science: interfaces and perspectives : 30th anniversary of the LAMSADE 393-432.
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2499108
Mixtacki, J. (2008). “Genome Halving under DCJ Revisited” in Computing and Combinatorics. 14th Annual International Conference, COCOON 2008 Dalian, China, June 27-29, 2008 Proceedings, Hu, X., and Wang, J. eds. Lecture Notes in Computer Science, 5092 276-286.
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919198
Quitzau, J. A. A., and Stoye, J. (2008). “Detecting Repeat Families in Incompletely Sequenced Genomes” in Proc. of WABI 2008 LNBI, vol. 5251, 342-353.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2498846
Boyar, J., and Medvedev, P. (2008). The relative worst order ratio applied to seat reservation. ACM Transactions on Algorithms 4, 1-22.
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2008 | Report | Veröffentlicht | PUB-ID: 2499065
Cicalese, F., and Milanic, M. (2008). Computing with Priced Information: game trees and the value dependent cost model. Technische Fakultät, Universität Bielefeld.
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2499072
Herms, I., and Rahmann, S. (2008). “Computing Alignment Seed Sensitivity with Probabilistic Arithmetic Automata” in Algorithms in Bioinformatics: 8th International Workshop, WABI 2008, Karlsruhe, Germany, September 15-19, 2008. Proceedings, Crandall, K. A., and Lagergren, J. eds. Lecture Notes in Computer Science, 5251 (Berlin u.a.: Springer), 318-329.
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2008 | Report | Veröffentlicht | PUB-ID: 2308930 OA
Cicalese, F., and Milanivc, M. (2008). Computing with Priced Information: game trees and the value dependent cost model. Forschungsberichte der Technischen Fakultät, Abteilung Informationstechnik / Universität Bielefeld, Bielefeld: Universität Bielefeld, Technische Fakultät.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2499098
Lozin, V. V., and Milanic, M. (2008). A polynomial algorithm to find an independent set of maximum weight in a fork-free graph. J. Discr. Alg. 6, 595-604.
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2008 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2499120
Rahmann, S., and Klau, G. W. (2008). “Integer Linear Programming Techniques for Discovering Approximate Gene Clusters” in Bioinformatics Algorithms: Techniques and Applications, Mǎndoiu, I. I., and Zelikovsky, A. eds. (Wiley Interscience), 203-222.
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2008 | Report | PUB-ID: 1970459 OA
Quitzau, J. A. A., and Stoye, J. (2008). A space efficient representation for sparse de Bruijn subgraphs. Forschungsberichte der Technischen Fakultät, Abteilung Informationstechnik / Universität Bielefeld, Bielefeld: Technische Fakultät der Universität Bielefeld.
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2008 | Report | PUB-ID: 1970461 OA
Ejaz, T., Rahmann, S., and Stoye, J. (2008). Online Abelian Pattern Matching. Forschungsberichte der Technischen Fakultät, Abteilung Informationstechnik / Universität Bielefeld, Bielefeld: Technische Fakultät der Universität Bielefeld.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1636699
Neuweger, H., Albaum, S., Dondrup, M., Persicke, M., Watt, T., Niehaus, K., Stoye, J., and Goesmann, A. (2008). MeltDB: a software platform for the analysis and integration of metabolomics experiment data. Bioinformatics 24, 2726-2732.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Bielefelder E-Dissertation | PUB-ID: 2305571 OA
Bannert, C. (2008). Flexible protein annotation with sequence- and secondary structure information. Bielefeld (Germany): Bielefeld University.
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2008 | Lexikoneintrag | Veröffentlicht | PUB-ID: 1918834
Stoye, J. (2008). “Suffix Tree Construction in RAM (1997; Farach-Colton)” in Encyclopedia of Algorithms, Kao, M. - Y. ed. (Springer Verlag), 925-928.
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919192
Böcker, S., Jahn, K., Mixtacki, J., and Stoye, J. (2008). “Computation of Median Gene Clusters” in Proc. of RECOMB 2008 LNBI, vol. 4955, 331-345.
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919200
Bergeron, A., Mixtacki, J., and Stoye, J. (2008). “On Computing the Breakpoint Reuse Rate in Rearrangement Scenarios” in Proc. of Recomb-CG 2008 LNBI, vol. 5267, 226-240.
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018405
Loyek, C., Woermann, F. G., and Nattkemper, T. W. (2008). “Detection of Focal Cortical Dysplasia in MRI Using Textural Features” in Proceedings of BVM 2008 (Berlin, Heidelberg: Springer Verlag), 432-436.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1636280 OA
Timm, W., Scherbart, A., Boecker, S., Kohlbacher, O., and Nattkemper, T. W. (2008). Peak intensity prediction in MALDI-TOF mass spectrometry: A machine learning study to support quantitative proteomics. BMC Bioinformatics 9, 443.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592257
Schoen, C., Blom, J., Claus, H., Schramm-Glueck, A., Brandt, P., Mueller, T., Goesmann, A., Joseph, B., Konietzny, S., Kurzai, O., et al. (2008). Whole-genome comparison of disease and carriage strains provides insights into virulence evolution in Neisseria meningitidis. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 105, 3473-3478.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1587304
Hazelhurst, S., Hide, W., Lipták, Z., Nogueira, R., and Starfield, R. (2008). An overview of the wcd EST clustering tool. BIOINFORMATICS 24, 1542-1546.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592737
Boecker, S., Lipták, Z., Martin, M., Pervukhin, A., and Sudek, H. (2008). DECOMP - from interpreting mass spectrometry peaks to solving the money changing problem. BIOINFORMATICS 24, 591-593.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1587078
Schürmann, K. - B., and Stoye, J. (2008). Counting suffix arrays and strings. THEORETICAL COMPUTER SCIENCE 395, 220-234.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1586009
Krause, L., Diaz, N. N., Edwards, R. A., Gartemann, K. - H., Krömeke, H., Neuweger, H., Pühler, A., Runte, K. J., Schlüter, A., Stoye, J., et al. (2008). Taxonomic composition and gene content of a methane-producing microbial community isolated from a biogas reactor. JOURNAL OF BIOTECHNOLOGY 136, 91-101.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1587052
Martin, C., Diaz, N. N., Ontrup, J., and Nattkemper, T. W. (2008). Hyperbolic SOM-based clustering of DNA fragment features for taxonomic visualization and classification. Bioinformatics 24, 1568-1574.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1586785 OA
Oehm, S., Gilbert, D., Tauch, A., Stoye, J., and Goesmann, A. (2008). Comparative Pathway Analyzer - a web server for comparative analysis, clustering and visualization of metabolic networks in multiple organisms. NUCLEIC ACIDS RESEARCH 36, W433-W437.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585939
Tauch, A., Schneider, J., Szczepanowski, R., Tilker, A., Viehöver, P., Gartemann, K. - H., Arnold, W., Blom, J., Brinkrolf, K., Brune, I., et al. (2008). Ultrafast pyrosequencing of Corynebacterium kroppenstedtii DSM44385 revealed insights into the physiology of a lipophilic corynebacterium that lacks mycolic acids. Journal of Biotechnology 136, 22-30.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783364 OA
Krause, L., Diaz, N. N., Goesmann, A., Kelley, S., Nattkemper, T. W., Rohwer, F., Edwards, R. A., and Stoye, J. (2008). Phylogenetic classification of short environmental DNA fragments. Nucleic Acids Research 36, 2230-2239.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919195
Bergeron, A., Mixtacki, J., and Stoye, J. (2008). “HP Distance via Double Cut and Join Distance” in Combinatorial Pattern Matching. 19th Annual Symposium, CPM 2008, Pisa, Italy, June 18-20, 2008 Proceedings Lecture Notes in Computer Science, 5029 56-68.
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018409
Martin, C., and Nattkemper, T. W. (2008). “A Tree Index to Support Clustering Based Exploratory Data Analysis” in Bioinformatics Research and Development : Second International Conference, BIRD 2008 Vienna, Austria, July 7-9, 2008 Proceedings Communications in Computer and Information Science, vol. 13, (Berlin, Heidelberg: Springer), 1-15.
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018435
Scherbart, A., Timm, W., Böcker, S., and Nattkemper, T. W. (2008). “Improved Mass Spectrometry Peak Intensity Prediction by Adaptive Feature Weighting” in International Conference on Neural Information Processing (Auckland, New Zealand).
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018381
Albaum, S., Neuweger, H., Lange, S., Mertens, D., Runte, K., Kalinowski, J., Nattkemper, T. W., and Goesmann, A. (2008). “ProSE - "Software as a Service" for Quantitative Proteomics (Poster abstract)” in HUPO 7th Annual World Congress.
PUB
 
2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018398
Herold, J., Friedenberger, M., Bode, M., Rajpoot, N., Schubert, W., and Nattkemper, T. W. (2008). “Flexible Synapse Detection in Fluorescence Micrographs by Modeling Human Expert Grading” in Proc. of 2008 IEEE International Symposium on Biomedical Imaging.
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018432
Scherbart, A., and Nattkemper, T. W. (2008). “The Diversity of Regression Ensembles Combining Bagging and Random Subspace Method” in International Conference on Neural Information Processing.
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2007 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018412
Martin, C., Díaz Solórzano, N. N., Ontrup, J., and Nattkemper, T. W. (2007). “Genome feature exploration using hyperbolic Self-Organizing Maps” in Proceedings of the 6th International Workshop on Self-Organizing Maps (WSOM 2007) (Bielefeld: Bielefeld University).
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2007 | Report | Veröffentlicht | PUB-ID: 2499308
Escoffier, B., Milanič, M., and Paschos, V. T. (2007). Simple and fast reoptimizations for the Steiner tree problem. DIMACS, Center for Discrete Mathematics and Theoretical Computer Science, NJ.
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2007 | Report | Veröffentlicht | PUB-ID: 2308810 OA
Böcker, S., Letzel, M., Lipták, Z., and Pervukhin, A. (2007). Identifying metabolites with integer decomposition techniques, using only their mass spectrometric isotope patterns. Forschungsberichte der Technischen Fakultät, Abteilung Informationstechnik / Universität Bielefeld, Bielefeld: Technical Faculty, Bielefeld University.
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2007 | Bielefelder E-Dissertation | PUB-ID: 2302005 OA
Krause, L. (2007). From single genomes to natural microbial communities : novel methods for the high-throughput analysis of genomic sequences. Bielefeld (Germany): Bielefeld University.
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2007 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2499472
Lozin, V. V., and Milanic, M. (2007). “Tree-width and Optimization in Bounded Degree Graphs” in Proc. 33rd International Workshop on Graph-Theoretic Concepts in Computer Science (WG 2007), vol. 4769, 45-54.
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2007 | Bielefelder E-Dissertation | PUB-ID: 2305131 OA
Carvalho Junior, S. A. de (2007). Algorithms for improving the design and production of oligonucleotide microarrays. Bielefeld (Germany): Bielefeld University.
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2007 | Report | Veröffentlicht | PUB-ID: 2308854 OA
Cicalese, F., and Quitzau, J. A. A. (2007). 2-Stage Fault Tolerant Interval Group Testing. Forschungsberichte der Technischen Fakultät, Abteilung Informationstechnik / Universität Bielefeld, Bielefeld: Universität Bielefeld, Technische Fakultät.
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2007 | Report | Veröffentlicht | PUB-ID: 2499449
Kaminski, M., Lozin, V. V., and Milanic, M. (2007). Recent Developments on Graphs of Bounded Clique-width. Rutgers Center for Operations Research, Rutgers University, NJ.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2499456
Klau, G. W., Rahmann, S., Schliep, A., Vingron, M., and Reinert, K. (2007). Integer linear programming approaches for non-unique probe selection. Discrete Applied Mathematics 155, 840-856.
PUB | DOI | WoS
 
2007 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 1918828
Schmidt, T., and Stoye, J. (2007). “Chapter 12: Gecko and GhostFam - Rigorous and Efficient Gene Cluster Detection in Prokaryotic Genomes” in Comparative Genomics, Volume 2, Bergman, N. H. ed. Methods in Molecular Biology, vol. 396, (Totowa, NJ: Humana Press Inc.), 165-182.
PUB | DOI | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2499284
Cicalese, F., Damaschke, P., Tansini, L., and Werth, S. (2007). Overlaps help: Improved bounds for group testing with interval queries. Discrete Applied Mathematics 155, 288-299.
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2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2499429
Gerlach, D., Wolf, M., Dandekar, T., Müller, T., Pokorny, A., and Rahmann, S. (2007). Deep Metazoan Phylogeny. In Silico Biology 7, Article 15.
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2007 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2499467
Lozin, V. V., and Milanic, M. (2007). “Maximum independent sets in graphs of low degree” in Proc. 18th Annual ACM-SIAM Symposium on Discrete Algorithms (SODA 2007) 874-880.
PUB
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2499481
Rahmann, S., Wittkop, T., Baumbach, J., Martin, M., Truss, A., and Böcker, S. (2007). Exact and Heuristic Algorithms for Weighted Cluster Editing. Comput Syst Bioinformatics Conf 6, 391-401.
PUB | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2499135
Baumbach, J., Bunkowski, A., Lange, S., Oberwahrenbrock, T., Kleinbölting, N., Rahmann, S., and Baumbach, J. I. (2007). IMS2- An integrated medical software system for early lung cancer detection using ion mobility spectrometry data of human breath. Journal of Integrative Bioinformatics 4, 75.
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2007 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2499279
Cicalese, F., and Amgarten Quitzau, J. A. (2007). “2-Stage Fault Tolerant Interval Group Testing” in Algorithms and Computation. 18th International Symposium, ISAAC 2007, Sendai, Japan, December 17-19, 2007. Proceedings, Tokuyama, T. ed. Lecture notes in computer science, 4835 858-868.
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