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415 Publikationen

2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919215
Genomic Distance with DCJ and Indels
Dias Vieira Braga M, Willing E, Stoye J (2010)
In: Proc. of WABI 2010. LNBI, 6293. 90-101.
PUB | DOI
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1929860
Global gene expression analysis in nonfailing and failing myocardium pre- and postpulsatile and nonpulsatile ventricular assist device support
Schwientek P, Ellinghaus P, Steppan S, D'Urso D, Seewald M, Kassner A, Cebulla R, Schulte-Eistrup S, Morshuis M, Roefe D, El Banayosy A, et al. (2010)
PHYSIOLOGICAL GENOMICS 42(3): 397-405.
PUB | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1930110
Comparative Genome Biology of a Serogroup B Carriage and Disease Strain Supports a Polygenic Nature of Meningococcal Virulence
Joseph B, Schneiker-Bekel S, Schramm-Glueck A, Blom J, Claus H, Linke B, Schwarz RF, Becker A, Goesmann A, Frosch M, Schoen C (2010)
JOURNAL OF BACTERIOLOGY 192(20): 5363-5377.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589663
A New Linear Time Algorithm to Compute the Genomic Distance via the Double Cut and Join Distance
Bergeron A, Mixtacki J, Stoye J (2009)
Theoretical Computer Science 410(51): 5300-5316.
PUB | DOI | WoS
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2427059
Simple and fast reoptimizations for the Steiner tree problem
Escoffier B, Milanič M, Paschos VT (2009)
Algorithmic Operations Research 4(2): 86-94.
PUB
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2308924
Competitive evaluation of threshold functions in the priced information model
Cicalese F, Milanic M (2009)
Annals of Operations Research 188(1): 111-132.
PUB | DOI | WoS
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2426437
MCC/IMS signals in human breath related to sarcoidosis-results of a feasibility study using an automated peak finding procedure
Bunkowski A, Bödeker B, Bader S, Westhoff M, Litterst P, Baumbach JI (2009)
Journal of Breath Research 3(4): 046001.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2426487
SIRIUS: decomposing isotope patterns for metabolite identification
Böcker S, Lipták Z, Pervukhin A, Letzel MC (2009)
Bioinformatics 25(2): 218-224.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Preprint | Veröffentlicht | PUB-ID: 2426653
On the Complexity of Searching in Trees: Average-case Minimization
Cicalese F, Jacobs T, Laber ES, Molinaro M (2009) .
PUB | arXiv
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2426660
Faster Deterministic Communication in Radio Networks
Cicalese F, Manne F, Xin Q (2009)
Algorithmica 54(2): 226-242.
PUB | DOI | WoS
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2427118
Modeling cross-hybridization on phylogenetic DNA microarrays increases the detection power of closely related species
Engelmann JA, Rahmann S, Wolf M, Schultz J, Fritzilas E, Kneitz S, Dandekar T, Müller T (2009)
Molecular Ecology Resources 9(1): 83-93.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Bielefelder E-Dissertation | PUB-ID: 2305073 OA
Comparing organisms on the level of metabolism
Oehm S (2009)
Bielefeld (Germany): Bielefeld University.
PUB | PDF
 
2009 | Bielefelder E-Dissertation | PUB-ID: 2301318 OA
MeltDB : a software platform for the analysis and integration of metabolomics experiment data
Neuweger H (2009)
Bielefeld (Germany): Bielefeld University.
PUB | PDF
 
2009 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2659405
SCJ: A Variant of Breakpoint Distance for Which Sorting, Genome Median and Genome Halving Problems Are Easy
Feijão P, Meidanis J (2009)
In: Algorithms in Bioinformatics. Salzberg SL, Warnow T (Eds); Lecture Notes in Computer Science, 5724. 85-96.
PUB | DOI
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2427161
Recent developments on graphs of bounded clique-width
Kamiński M, Lozin VV, Milanič M (2009)
Discrete Appl. Math. 157(12): 2747-2761.
PUB | DOI | WoS
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2427173
On the plane-width of graphs
Kamiński M, Medvedev P, Milanič M (2009)
Electronic Notes in Discrete Mathematics 34: 633-637.
PUB | DOI
 
2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919206
Counting All DCJ Sorting Scenarios
Dias Vieira Braga M, Stoye J (2009)
In: Proc. of Recomb-CG 2009. LNBI, 5817. 36-47.
PUB | DOI
 
2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2426605
Searching for Jumbled Patterns in Strings
Cicalese F, Fici G, Lipták Z (2009)
In: Proc. of the Prague Stringology Conference 2009. 105-117.
PUB
 
2009 | Bielefelder E-Dissertation | PUB-ID: 2303240 OA
New algorithms and lower bounds for sequential-access data compression
Gagie T (2009)
Bielefeld (Germany): Bielefeld University.
PUB | PDF
 
2009 | Bielefelder E-Dissertation | PUB-ID: 2302608 OA PUB | PDF
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2406118
Engineering a compressed suffix tree implementation
Välimäki N, Mäkinen V, Gerlach W, Dixit K (2009)
Journal of Experimental Algorithmics (JEA) 14: 4.2-2:4.23.
PUB | DOI
 
2009 | Bielefelder E-Dissertation | PUB-ID: 2304745 OA
Combinatorial aspects of low-rank matrix factorization and two applications in bioinformatics
Fritzilas E (2009)
Bielefeld (Germany): Bielefeld University.
PUB | PDF
 
2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919207
Finding Nested Common Intervals Efficiently
Blin G, Stoye J (2009)
In: Proc. of Recomb-CG 2009. LNBI, 5817. 59-69.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018390
A way towards analyzing high-content bioimage data by means of semantic annotation and visual data mining
Herold J, Abouna S, Zhou L, Pelengaris S, Epstein DBA, Khan M, Nattkemper TW (2009)
In: SPIE Medical Imaging.
PUB | DOI
 
2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018422
BIIGLE - Web 2.0 enabled labelling and exploring of images from the Arctic deep-sea observatory HAUSGARTEN
Ontrup J, Ehnert N, Bergmann M, Nattkemper TW (2009)
In: OCEANS 2009 - Europe. Bremen.
PUB | DOI
 
2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018427
A Robust Adaptive Wavelet-based Method for Classification of Meningioma Histology Images
Qureshi H, Rajpoot N, Nattkemper TW, Hans V (2009)
In: MICCAI«2009 Workshop on Optical Tissue Image Analysis in Microscopy, Histology, and Endoscopy.
PUB
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783187 OA
EDGAR: a software framework for the comparative analysis of prokaryotic genomes
Blom J, Albaum S, Doppmeier D, Pühler A, Vorhölter F-J, Zakrzewski M, Goesmann A (2009)
BMC Bioinformatics 10(1): 154.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1636062
Detecting, Assessing, and Monitoring Relevant Topics in Virtual Information Environments
Ontrup J, Ritter H, Scholz S, Wagner R (2009)
IEEE Transactions on Knowledge and Data Engineering 21(3): 415-427.
PUB | DOI | WoS
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1898137
Approximative Gencluster und ihre Anwendung in der komparativen Genomik
Jahn K, Stoye J (2009)
Informatik-Spektrum 32(4): 288-300.
PUB | DOI
 
2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1893884
Phylogenetic Comparative Assembly
Husemann P, Stoye J (2009)
In: Proc. of WABI 2009. LNBI, 5724. 145-156.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635314 OA
TACOA - Taxonomic classification of environmental genomic fragments using a kernelized nearest neighbor approach
Diaz NN, Krause L, Goesmann A, Niehaus K, Nattkemper TW (2009)
BMC Bioinformatics 10(1): 56.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635321 OA
EMMA 2-A MAGE-compliant system for the collaborative analysis and integration of microarray data
Dondrup M, Albaum S, Griebel T, Henckel K, Jünemann S, Kahlke T, Kleindt CK, Kuester H, Linke B, Mertens D, Mittard-Runte V, et al. (2009)
BMC Bioinformatics 10(1): 50.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1591507
A Unified Approach for Reconstructing Ancient Gene Clusters
Stoye J, Wittler R (2009)
IEEE/ACM Transactions on Computational Biology and Bioinformatics 6(3): 387-400.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589098 OA
WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads
Gerlach W, Jünemann S, Tille F, Goesmann A, Stoye J (2009)
BMC Bioinformatics 10(1): 430.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589531
Qupe-a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments
Albaum S, Neuweger H, Fraenzel B, Lange S, Mertens D, Troetschel C, Wolters D, Kalinowski J, Nattkemper TW, Goesmann A (2009)
Bioinformatics 25(23): 3128-3134.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1590204
A report on the 2009 SIG on short read sequencing and algorithms (Short-SIG)
Brudno M, Medvedev P, Stoye J, De La Vega FM (2009)
BIOINFORMATICS 25(21): 2863-2864.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588783
Use of machine-learning algorithms for the automated detection of cold-water coral habitats: a pilot study
Purser A, Bergmann M, Ontrup J, Nattkemper TW (2009)
Marine Ecology Progress Series 397: 241-251.
PUB | DOI | WoS
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1898105
Computation of Median Gene Clusters
Böcker S, Jahn K, Mixtacki J, Stoye J (2009)
Journal of Computational Biology 16(8): 1085-1099.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1591319
ChromA: signal-based retention time alignment for chromatography-mass spectrometry data
Hoffmann N, Stoye J (2009)
Bioinformatics 25(16): 2080-2081.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588760 OA
An asymmetric approach to preserve common intervals while sorting by reversals
Dias Vieira Braga M, Gautier C, Sagot M-F (2009)
Algorithms for Molecular Biology 4(1): 16.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919209
Rearrangement Models and Single-Cut Operations
Medvedev P, Stoye J (2009)
In: Comparative Genomics : International Workshop, RECOMB-CG 2009, Budapest, Hungary, September 27-29, 2009. Proceedings. Lecture Notes in Computer Science, 5817. Berlin, Heidelberg: Springer: 84-97.
PUB | DOI
 
2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018440
BIIGLE Tools - A Web 2.0 Approach for Visual Bioimage Database Mining
Schoening T, Ehnert N, Ontrup J, Nattkemper TW (2009)
In: IV 09 - Intl. Conference on Information Visualization.
PUB | DOI
 
2009 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 1918945
Computational Short Read Metagenomics
Stoye J (2009)
Presented at the JOBIM 2009, Nantes, France.
PUB
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634447
The Sequence Analysis and Management System - SAMS-2.0: Data management and sequence analysis adapted to changing requirements from traditional sanger sequencing to ultrafast sequencing technologies
Bekel T, Henckel K, Küster H, Meyer F, Mittard-Runte V, Neuweger H, Paarmann D, Rupp O, Zakrzewski M, Pühler A, Stoye J, et al. (2009)
Journal of Biotechnology 140(1-2): 3-12.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634615
Massive parallel bisulfite sequencing of CG-rich DNA fragments reveals that methylation of many X-chromosomal CpG islands in female blood DNA is incomplete
Zeschnigk M, Martin M, Betzl G, Kalbe A, Sirsch C, Buiting K, Gross S, Fritzilas E, Frey B, Rahmann S, Horsthemke B (2009)
HUMAN MOLECULAR GENETICS 18(8): 1439-1448.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2427252
The Maximum Independent Set Problem in Planar Graphs
Alekseev VE, Lozin VV, Malyshev D, Milanič M (2008)
In: Proc. MFCS 2008. 96-107.
PUB | DOI
 
2008 | Bielefelder E-Dissertation | PUB-ID: 2306324 OA PUB | PDF
 
2008 | Bielefelder E-Dissertation | PUB-ID: 2302950 OA
The double cut and join operation and its applications to genome rearrangements
Zakotnik J (2008)
Bielefeld (Germany): Bielefeld University.
PUB | PDF
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2659345
Structure and evolution of the mitochondrial genomes of Haematobia irritans and Stomoxys calcitrans: The Muscidae (Diptera: Calyptratae) perspective
Oliveira MT, Barau JG, Junqueira ACM, Feijão P, Rosa AC da, Abreu CF, Azeredo-Espin AML, Lessinger AC (2008)
Molecular Phylogenetics and Evolution 48(3): 850-857.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2308903
Function Evaluation Via Linear Programming in the Priced Information Model
Cicalese F, Laber ES (2008)
In: Proc. ICALP 2008. 173-185.
PUB | DOI
 
2008 | Report | Veröffentlicht | PUB-ID: 2308927 OA
On Parsimony Haplotyping
Cicalese F, Milanivc M (2008) Forschungsberichte der Technischen Fakultät, Abteilung Informationstechnik / Universität Bielefeld.
Bielefeld: Universität Bielefeld, Technische Fakultät.
PUB | PDF
 
2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2308974
Structural Identifiability in Low-Rank Matrix Factorization
Fritzilas E, Rios-Solis YA, Rahmann S (2008)
In: Computing and Combinatorics 14th Annual International Conference, COCOON 2008 Dalian, China, June 27-29, 2008 Proceedings. Hu X, Wang J (Eds); Lecture Notes in Computer Science, 5092. Berlin u.a.: Springer: 140-148.
PUB | DOI
 
2008 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2499103
The Complexity of the Exact Weighted Independent Set Problem
Milanivc M, Monnot J (2008)
In: Combinatorial optimization and theoretical computer science: interfaces and perspectives : 30th anniversary of the LAMSADE. 393-432.
PUB | DOI
 
2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2499108
Genome Halving under DCJ Revisited
Mixtacki J (2008)
In: Computing and Combinatorics. 14th Annual International Conference, COCOON 2008 Dalian, China, June 27-29, 2008 Proceedings. Hu X, Wang J (Eds); Lecture Notes in Computer Science, 5092. 276-286.
PUB
 
2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919198
Detecting Repeat Families in Incompletely Sequenced Genomes
Quitzau JAA, Stoye J (2008)
In: Proc. of WABI 2008. LNBI, 5251. 342-353.
PUB | DOI
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2498846
The relative worst order ratio applied to seat reservation
Boyar J, Medvedev P (2008)
ACM Transactions on Algorithms 4(4): 1-22.
PUB | DOI | WoS
 
2008 | Report | Veröffentlicht | PUB-ID: 2499065
Computing with Priced Information: game trees and the value dependent cost model
Cicalese F, Milanic M (2008)
Technische Fakultät, Universität Bielefeld.
PUB
 
2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2499072
Computing Alignment Seed Sensitivity with Probabilistic Arithmetic Automata
Herms I, Rahmann S (2008)
In: Algorithms in Bioinformatics: 8th International Workshop, WABI 2008, Karlsruhe, Germany, September 15-19, 2008. Proceedings. Crandall KA, Lagergren J (Eds); Lecture Notes in Computer Science, 5251. Berlin u.a.: Springer: 318-329.
PUB | DOI
 
2008 | Report | Veröffentlicht | PUB-ID: 2308930 OA
Computing with Priced Information: game trees and the value dependent cost model
Cicalese F, Milanivc M (2008) Forschungsberichte der Technischen Fakultät, Abteilung Informationstechnik / Universität Bielefeld.
Bielefeld: Universität Bielefeld, Technische Fakultät.
PUB | PDF
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2499098
A polynomial algorithm to find an independent set of maximum weight in a fork-free graph
Lozin VV, Milanic M (2008)
J. Discr. Alg. 6(4): 595-604.
PUB | DOI
 
2008 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2499120
Integer Linear Programming Techniques for Discovering Approximate Gene Clusters
Rahmann S, Klau GW (2008)
In: Bioinformatics Algorithms: Techniques and Applications. Mǎndoiu II, Zelikovsky A (Eds); Wiley Interscience: 203-222.
PUB | DOI
 
2008 | Report | PUB-ID: 1970459 OA
A space efficient representation for sparse de Bruijn subgraphs
Quitzau JAA, Stoye J (2008) Forschungsberichte der Technischen Fakultät, Abteilung Informationstechnik / Universität Bielefeld.
Bielefeld: Technische Fakultät der Universität Bielefeld.
PUB | PDF
 
2008 | Report | PUB-ID: 1970461 OA
Online Abelian Pattern Matching
Ejaz T, Rahmann S, Stoye J (2008) Forschungsberichte der Technischen Fakultät, Abteilung Informationstechnik / Universität Bielefeld.
Bielefeld: Technische Fakultät der Universität Bielefeld.
PUB | PDF
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1636699
MeltDB: a software platform for the analysis and integration of metabolomics experiment data
Neuweger H, Albaum S, Dondrup M, Persicke M, Watt T, Niehaus K, Stoye J, Goesmann A (2008)
Bioinformatics 24(23): 2726-2732.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Bielefelder E-Dissertation | PUB-ID: 2305571 OA
Flexible protein annotation with sequence- and secondary structure information
Bannert C (2008)
Bielefeld (Germany): Bielefeld University.
PUB | PDF
 
2008 | Lexikoneintrag | Veröffentlicht | PUB-ID: 1918834
Suffix Tree Construction in RAM (1997; Farach-Colton)
Stoye J (2008)
In: Encyclopedia of Algorithms. Kao M-Y (Ed); Springer Verlag: 925-928.
PUB | DOI
 
2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919192
Computation of Median Gene Clusters
Böcker S, Jahn K, Mixtacki J, Stoye J (2008)
In: Proc. of RECOMB 2008. LNBI, 4955. 331-345.
PUB | DOI
 
2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919200
On Computing the Breakpoint Reuse Rate in Rearrangement Scenarios
Bergeron A, Mixtacki J, Stoye J (2008)
In: Proc. of Recomb-CG 2008. LNBI, 5267. 226-240.
PUB | DOI
 
2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018405
Detection of Focal Cortical Dysplasia in MRI Using Textural Features
Loyek C, Woermann FG, Nattkemper TW (2008)
In: Proceedings of BVM 2008. Berlin, Heidelberg: Springer Verlag: 432-436.
PUB | DOI
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1636280 OA
Peak intensity prediction in MALDI-TOF mass spectrometry: A machine learning study to support quantitative proteomics
Timm W, Scherbart A, Boecker S, Kohlbacher O, Nattkemper TW (2008)
BMC Bioinformatics 9(1): 443.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592257
Whole-genome comparison of disease and carriage strains provides insights into virulence evolution in Neisseria meningitidis
Schoen C, Blom J, Claus H, Schramm-Glueck A, Brandt P, Mueller T, Goesmann A, Joseph B, Konietzny S, Kurzai O, Schmitt C, et al. (2008)
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 105(9): 3473-3478.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592737
DECOMP - from interpreting mass spectrometry peaks to solving the money changing problem
Boecker S, Lipták Z, Martin M, Pervukhin A, Sudek H (2008)
BIOINFORMATICS 24(4): 591-593.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1587304
An overview of the wcd EST clustering tool
Hazelhurst S, Hide W, Lipták Z, Nogueira R, Starfield R (2008)
BIOINFORMATICS 24(13): 1542-1546.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1587078
Counting suffix arrays and strings
Schürmann K-B, Stoye J (2008)
THEORETICAL COMPUTER SCIENCE 395(2-3): 220-234.
PUB | DOI | WoS
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1587052
Hyperbolic SOM-based clustering of DNA fragment features for taxonomic visualization and classification
Martin C, Diaz NN, Ontrup J, Nattkemper TW (2008)
Bioinformatics 24(14): 1568-1574.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1586009
Taxonomic composition and gene content of a methane-producing microbial community isolated from a biogas reactor
Krause L, Diaz NN, Edwards RA, Gartemann K-H, Krömeke H, Neuweger H, Pühler A, Runte KJ, Schlüter A, Stoye J, Szczepanowski R, et al. (2008)
JOURNAL OF BIOTECHNOLOGY 136(1-2): 91-101.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1586785 OA
Comparative Pathway Analyzer - a web server for comparative analysis, clustering and visualization of metabolic networks in multiple organisms
Oehm S, Gilbert D, Tauch A, Stoye J, Goesmann A (2008)
NUCLEIC ACIDS RESEARCH 36(Web Server): W433-W437.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585939
Ultrafast pyrosequencing of Corynebacterium kroppenstedtii DSM44385 revealed insights into the physiology of a lipophilic corynebacterium that lacks mycolic acids
Tauch A, Schneider J, Szczepanowski R, Tilker A, Viehöver P, Gartemann K-H, Arnold W, Blom J, Brinkrolf K, Brune I, Goetker S, et al. (2008)
Journal of Biotechnology 136(1-2): 22-30.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783364 OA
Phylogenetic classification of short environmental DNA fragments
Krause L, Diaz NN, Goesmann A, Kelley S, Nattkemper TW, Rohwer F, Edwards RA, Stoye J (2008)
Nucleic Acids Research 36(7): 2230-2239.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919195
HP Distance via Double Cut and Join Distance
Bergeron A, Mixtacki J, Stoye J (2008)
In: Combinatorial Pattern Matching. 19th Annual Symposium, CPM 2008, Pisa, Italy, June 18-20, 2008 Proceedings. Lecture Notes in Computer Science, 5029. 56-68.
PUB | DOI
 
2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018409
A Tree Index to Support Clustering Based Exploratory Data Analysis
Martin C, Nattkemper TW (2008)
In: Bioinformatics Research and Development : Second International Conference, BIRD 2008 Vienna, Austria, July 7-9, 2008 Proceedings. Communications in Computer and Information Science, 13. Berlin, Heidelberg: Springer: 1-15.
PUB | DOI
 
2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018435
Improved Mass Spectrometry Peak Intensity Prediction by Adaptive Feature Weighting
Scherbart A, Timm W, Böcker S, Nattkemper TW (2008)
In: International Conference on Neural Information Processing. Auckland, New Zealand.
PUB | DOI
 
2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018381
ProSE - "Software as a Service" for Quantitative Proteomics (Poster abstract)
Albaum S, Neuweger H, Lange S, Mertens D, Runte K, Kalinowski J, Nattkemper TW, Goesmann A (2008)
In: HUPO 7th Annual World Congress.
PUB
 
2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018398
Flexible Synapse Detection in Fluorescence Micrographs by Modeling Human Expert Grading
Herold J, Friedenberger M, Bode M, Rajpoot N, Schubert W, Nattkemper TW (2008)
In: Proc. of 2008 IEEE International Symposium on Biomedical Imaging.
PUB | DOI
 
2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018432
The Diversity of Regression Ensembles Combining Bagging and Random Subspace Method
Scherbart A, Nattkemper TW (2008)
In: International Conference on Neural Information Processing.
PUB | DOI
 
2007 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018412
Genome feature exploration using hyperbolic Self-Organizing Maps
Martin C, Díaz Solórzano NN, Ontrup J, Nattkemper TW (2007)
In: Proceedings of the 6th International Workshop on Self-Organizing Maps (WSOM 2007). Bielefeld: Bielefeld University.
PUB | DOI
 
2007 | Report | Veröffentlicht | PUB-ID: 2499308
Simple and fast reoptimizations for the Steiner tree problem
Escoffier B, Milanič M, Paschos VT (2007)
DIMACS, Center for Discrete Mathematics and Theoretical Computer Science, NJ.
PUB
 
2007 | Report | Veröffentlicht | PUB-ID: 2308810 OA
Identifying metabolites with integer decomposition techniques, using only their mass spectrometric isotope patterns
Böcker S, Letzel M, Lipták Z, Pervukhin A (2007) Forschungsberichte der Technischen Fakultät, Abteilung Informationstechnik / Universität Bielefeld.
Bielefeld: Technical Faculty, Bielefeld University.
PUB | PDF
 
2007 | Bielefelder E-Dissertation | PUB-ID: 2302005 OA PUB | PDF
 
2007 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2499472
Tree-width and Optimization in Bounded Degree Graphs
Lozin VV, Milanic M (2007)
In: Proc. 33rd International Workshop on Graph-Theoretic Concepts in Computer Science (WG 2007)., 4769. 45-54.
PUB | DOI
 
2007 | Bielefelder E-Dissertation | PUB-ID: 2305131 OA
Algorithms for improving the design and production of oligonucleotide microarrays
Carvalho Junior SA de (2007)
Bielefeld (Germany): Bielefeld University.
PUB | PDF
 
2007 | Report | Veröffentlicht | PUB-ID: 2308854 OA
2-Stage Fault Tolerant Interval Group Testing
Cicalese F, Quitzau JAA (2007) Forschungsberichte der Technischen Fakultät, Abteilung Informationstechnik / Universität Bielefeld.
Bielefeld: Universität Bielefeld, Technische Fakultät.
PUB | PDF
 
2007 | Report | Veröffentlicht | PUB-ID: 2499449
Recent Developments on Graphs of Bounded Clique-width
Kaminski M, Lozin VV, Milanic M (2007)
Rutgers Center for Operations Research, Rutgers University, NJ.
PUB
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2499456
Integer linear programming approaches for non-unique probe selection
Klau GW, Rahmann S, Schliep A, Vingron M, Reinert K (2007)
Discrete Applied Mathematics 155(6-7): 840-856.
PUB | DOI | WoS
 
2007 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 1918828
Chapter 12: Gecko and GhostFam - Rigorous and Efficient Gene Cluster Detection in Prokaryotic Genomes
Schmidt T, Stoye J (2007)
In: Comparative Genomics, Volume 2. Bergman NH (Ed); Methods in Molecular Biology, 396. Totowa, NJ: Humana Press Inc.: 165-182.
PUB | DOI | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2499284
Overlaps help: Improved bounds for group testing with interval queries
Cicalese F, Damaschke P, Tansini L, Werth S (2007)
Discrete Applied Mathematics 155(3): 288-299.
PUB | DOI | WoS
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2499429
Deep Metazoan Phylogeny
Gerlach D, Wolf M, Dandekar T, Müller T, Pokorny A, Rahmann S (2007)
In Silico Biology 7: Article 15.
PUB
 
2007 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2499467
Maximum independent sets in graphs of low degree
Lozin VV, Milanic M (2007)
In: Proc. 18th Annual ACM-SIAM Symposium on Discrete Algorithms (SODA 2007). 874-880.
PUB
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2499481
Exact and Heuristic Algorithms for Weighted Cluster Editing
Rahmann S, Wittkop T, Baumbach J, Martin M, Truss A, Böcker S (2007)
Comput Syst Bioinformatics Conf 6(1): 391-401.
PUB | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2499135
IMS2- An integrated medical software system for early lung cancer detection using ion mobility spectrometry data of human breath
Baumbach J, Bunkowski A, Lange S, Oberwahrenbrock T, Kleinbölting N, Rahmann S, Baumbach JI (2007)
Journal of Integrative Bioinformatics 4(3): 75.
PUB | DOI
 

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