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419 Publikationen

2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919211
Hufsky F, Kuchenbecker L, Jahn K, Stoye J, Böcker S (2010)
Swiftly Computing Center Strings.
In: Proc. of WABI 2010. LNBI, 6293. 325-336.
PUB | DOI | WoS | PubMed | Europe PMC
 
2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919216
Kovac J, Dias Vieira Braga M, Stoye J (2010)
The Problem of Chromosome Reincorporation in DCJ Sorting and Halving.
In: Proc. of Recomb-CG 2010. LNBI, 6398. 13-24.
PUB | DOI
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1794419
Herold J, Zhou L, Abouna S, Pelengaris S, Epstein D, Khan M, Nattkemper TW (2010)
Integrating semantic annotation and information visualization for the analysis of multichannel fluorescence micrographs from pancreatic tissue.
Computerized Medical Imaging and Graphics 34(6): 446-452.
PUB | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1898025
Dias Vieira Braga M, Stoye J (2010)
The Solution Space of Sorting by DCJ.
Journal of Computational Biology 17(9): 1145-1165.
PUB | DOI | WoS | PubMed | Europe PMC
 
2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919215
Dias Vieira Braga M, Willing E, Stoye J (2010)
Genomic Distance with DCJ and Indels.
In: Proc. of WABI 2010. LNBI, 6293. 90-101.
PUB | DOI
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1929860
Schwientek P, Ellinghaus P, Steppan S, D'Urso D, Seewald M, Kassner A, Cebulla R, Schulte-Eistrup S, Morshuis M, Roefe D, El Banayosy A, Koerfer R, Milting H (2010)
Global gene expression analysis in nonfailing and failing myocardium pre- and postpulsatile and nonpulsatile ventricular assist device support.
PHYSIOLOGICAL GENOMICS 42(3): 397-405.
PUB | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1930110
Joseph B, Schneiker-Bekel S, Schramm-Glueck A, Blom J, Claus H, Linke B, Schwarz RF, Becker A, Goesmann A, Frosch M, Schoen C (2010)
Comparative Genome Biology of a Serogroup B Carriage and Disease Strain Supports a Polygenic Nature of Meningococcal Virulence.
JOURNAL OF BACTERIOLOGY 192(20): 5363-5377.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589663
Bergeron A, Mixtacki J, Stoye J (2009)
A New Linear Time Algorithm to Compute the Genomic Distance via the Double Cut and Join Distance.
Theoretical Computer Science 410(51): 5300-5316.
PUB | DOI | WoS
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2427059
Escoffier B, Milanič M, Paschos VT (2009)
Simple and fast reoptimizations for the Steiner tree problem.
Algorithmic Operations Research 4(2): 86-94.
PUB
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2308924
Cicalese F, Milanic M (2009)
Competitive evaluation of threshold functions in the priced information model.
Annals of Operations Research 188(1): 111-132.
PUB | DOI | WoS
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2426437
Bunkowski A, Bödeker B, Bader S, Westhoff M, Litterst P, Baumbach JI (2009)
MCC/IMS signals in human breath related to sarcoidosis-results of a feasibility study using an automated peak finding procedure.
Journal of Breath Research 3(4): 046001.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2426487
Böcker S, Lipták Z, Pervukhin A, Letzel MC (2009)
SIRIUS: decomposing isotope patterns for metabolite identification.
Bioinformatics 25(2): 218-224.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Preprint | Veröffentlicht | PUB-ID: 2426653
Cicalese F, Jacobs T, Laber ES, Molinaro M (2009)
On the Complexity of Searching in Trees: Average-case Minimization.
PUB | arXiv
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2426660
Cicalese F, Manne F, Xin Q (2009)
Faster Deterministic Communication in Radio Networks.
Algorithmica 54(2): 226-242.
PUB | DOI | WoS
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2427118
Engelmann JA, Rahmann S, Wolf M, Schultz J, Fritzilas E, Kneitz S, Dandekar T, Müller T (2009)
Modeling cross-hybridization on phylogenetic DNA microarrays increases the detection power of closely related species.
Molecular Ecology Resources 9(1): 83-93.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Bielefelder E-Dissertation | PUB-ID: 2305073 OA
Oehm S (2009)
Comparing organisms on the level of metabolism.
Bielefeld (Germany): Bielefeld University.
PUB | PDF
 
2009 | Bielefelder E-Dissertation | PUB-ID: 2301318 OA
Neuweger H (2009)
MeltDB : a software platform for the analysis and integration of metabolomics experiment data.
Bielefeld (Germany): Bielefeld University.
PUB | PDF
 
2009 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2659405
Feijão P, Meidanis J (2009)
SCJ: A Variant of Breakpoint Distance for Which Sorting, Genome Median and Genome Halving Problems Are Easy.
In: Algorithms in Bioinformatics. Salzberg SL, Warnow T (Eds); Lecture Notes in Computer Science, 5724. 85-96.
PUB | DOI
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2427161
Kamiński M, Lozin VV, Milanič M (2009)
Recent developments on graphs of bounded clique-width.
Discrete Appl. Math. 157(12): 2747-2761.
PUB | DOI | WoS
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2427173
Kamiński M, Medvedev P, Milanič M (2009)
On the plane-width of graphs.
Electronic Notes in Discrete Mathematics 34: 633-637.
PUB | DOI
 
2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919206
Dias Vieira Braga M, Stoye J (2009)
Counting All DCJ Sorting Scenarios.
In: Proc. of Recomb-CG 2009. LNBI, 5817. 36-47.
PUB | DOI
 
2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2426605
Cicalese F, Fici G, Lipták Z (2009)
Searching for Jumbled Patterns in Strings.
In: Proc. of the Prague Stringology Conference 2009. 105-117.
PUB
 
2009 | Bielefelder E-Dissertation | PUB-ID: 2303240 OA
Gagie T (2009)
New algorithms and lower bounds for sequential-access data compression.
Bielefeld (Germany): Bielefeld University.
PUB | PDF
 
2009 | Bielefelder E-Dissertation | PUB-ID: 2302608 OA
Herms I (2009)
Probabilistic arithmetic automata : applications of a stochastic computational framework in biological sequence analysis.
Bielefeld (Germany): Bielefeld University.
PUB | PDF
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2406118
Välimäki N, Mäkinen V, Gerlach W, Dixit K (2009)
Engineering a compressed suffix tree implementation.
Journal of Experimental Algorithmics (JEA) 14: 4.2-2:4.23.
PUB | DOI
 
2009 | Bielefelder E-Dissertation | PUB-ID: 2304745 OA
Fritzilas E (2009)
Combinatorial aspects of low-rank matrix factorization and two applications in bioinformatics.
Bielefeld (Germany): Bielefeld University.
PUB | PDF
 
2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919207
Blin G, Stoye J (2009)
Finding Nested Common Intervals Efficiently.
In: Proc. of Recomb-CG 2009. LNBI, 5817. 59-69.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018390
Herold J, Abouna S, Zhou L, Pelengaris S, Epstein DBA, Khan M, Nattkemper TW (2009)
A way towards analyzing high-content bioimage data by means of semantic annotation and visual data mining.
In: SPIE Medical Imaging. .
PUB | DOI
 
2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018422
Ontrup J, Ehnert N, Bergmann M, Nattkemper TW (2009)
BIIGLE - Web 2.0 enabled labelling and exploring of images from the Arctic deep-sea observatory HAUSGARTEN.
In: OCEANS 2009 - Europe. Bremen.
PUB | DOI
 
2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018427
Qureshi H, Rajpoot N, Nattkemper TW, Hans V (2009)
A Robust Adaptive Wavelet-based Method for Classification of Meningioma Histology Images.
In: MICCAI«2009 Workshop on Optical Tissue Image Analysis in Microscopy, Histology, and Endoscopy. .
PUB
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783187 OA
Blom J, Albaum S, Doppmeier D, Pühler A, Vorhölter F-J, Zakrzewski M, Goesmann A (2009)
EDGAR: a software framework for the comparative analysis of prokaryotic genomes.
BMC Bioinformatics 10(1): 154.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1636062
Ontrup J, Ritter H, Scholz S, Wagner R (2009)
Detecting, Assessing, and Monitoring Relevant Topics in Virtual Information Environments.
IEEE Transactions on Knowledge and Data Engineering 21(3): 415-427.
PUB | DOI | WoS
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1898137
Jahn K, Stoye J (2009)
Approximative Gencluster und ihre Anwendung in der komparativen Genomik.
Informatik-Spektrum 32(4): 288-300.
PUB | DOI
 
2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1893884
Husemann P, Stoye J (2009)
Phylogenetic Comparative Assembly.
In: Proc. of WABI 2009. LNBI, 5724. 145-156.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635314 OA
Diaz NN, Krause L, Goesmann A, Niehaus K, Nattkemper TW (2009)
TACOA - Taxonomic classification of environmental genomic fragments using a kernelized nearest neighbor approach.
BMC Bioinformatics 10(1): 56.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635321 OA
Dondrup M, Albaum S, Griebel T, Henckel K, Jünemann S, Kahlke T, Kleindt CK, Kuester H, Linke B, Mertens D, Mittard-Runte V, Neuweger H, Runte KJ, Tauch A, Tille F, Pühler A, Goesmann A (2009)
EMMA 2-A MAGE-compliant system for the collaborative analysis and integration of microarray data.
BMC Bioinformatics 10(1): 50.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1591507
Stoye J, Wittler R (2009)
A Unified Approach for Reconstructing Ancient Gene Clusters.
IEEE/ACM Transactions on Computational Biology and Bioinformatics 6(3): 387-400.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589098 OA
Gerlach W, Jünemann S, Tille F, Goesmann A, Stoye J (2009)
WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads.
BMC Bioinformatics 10(1): 430.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589531
Albaum S, Neuweger H, Fraenzel B, Lange S, Mertens D, Troetschel C, Wolters D, Kalinowski J, Nattkemper TW, Goesmann A (2009)
Qupe-a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments.
Bioinformatics 25(23): 3128-3134.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1590204
Brudno M, Medvedev P, Stoye J, De La Vega FM (2009)
A report on the 2009 SIG on short read sequencing and algorithms (Short-SIG).
BIOINFORMATICS 25(21): 2863-2864.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588783
Purser A, Bergmann M, Ontrup J, Nattkemper TW (2009)
Use of machine-learning algorithms for the automated detection of cold-water coral habitats: a pilot study.
Marine Ecology Progress Series 397: 241-251.
PUB | DOI | WoS
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1898105
Böcker S, Jahn K, Mixtacki J, Stoye J (2009)
Computation of Median Gene Clusters.
Journal of Computational Biology 16(8): 1085-1099.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1591319
Hoffmann N, Stoye J (2009)
ChromA: signal-based retention time alignment for chromatography-mass spectrometry data.
Bioinformatics 25(16): 2080-2081.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588760 OA
Dias Vieira Braga M, Gautier C, Sagot M-F (2009)
An asymmetric approach to preserve common intervals while sorting by reversals.
Algorithms for Molecular Biology 4(1): 16.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919209
Medvedev P, Stoye J (2009)
Rearrangement Models and Single-Cut Operations.
In: Comparative Genomics : International Workshop, RECOMB-CG 2009, Budapest, Hungary, September 27-29, 2009. Proceedings. Lecture Notes in Computer Science, 5817. Berlin, Heidelberg: Springer: 84-97.
PUB | DOI
 
2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018440
Schoening T, Ehnert N, Ontrup J, Nattkemper TW (2009)
BIIGLE Tools - A Web 2.0 Approach for Visual Bioimage Database Mining.
In: IV 09 - Intl. Conference on Information Visualization. .
PUB | DOI
 
2009 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 1918945
Stoye J (2009)
Computational Short Read Metagenomics.
Presented at the JOBIM 2009, Nantes, France.
PUB
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634447
Bekel T, Henckel K, Küster H, Meyer F, Mittard-Runte V, Neuweger H, Paarmann D, Rupp O, Zakrzewski M, Pühler A, Stoye J, Goesmann A (2009)
The Sequence Analysis and Management System - SAMS-2.0: Data management and sequence analysis adapted to changing requirements from traditional sanger sequencing to ultrafast sequencing technologies.
Journal of Biotechnology 140(1-2): 3-12.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634615
Zeschnigk M, Martin M, Betzl G, Kalbe A, Sirsch C, Buiting K, Gross S, Fritzilas E, Frey B, Rahmann S, Horsthemke B (2009)
Massive parallel bisulfite sequencing of CG-rich DNA fragments reveals that methylation of many X-chromosomal CpG islands in female blood DNA is incomplete.
HUMAN MOLECULAR GENETICS 18(8): 1439-1448.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2427252
Alekseev VE, Lozin VV, Malyshev D, Milanič M (2008)
The Maximum Independent Set Problem in Planar Graphs.
In: Proc. MFCS 2008. 96-107.
PUB | DOI
 
2008 | Bielefelder E-Dissertation | PUB-ID: 2306324 OA
Baumbach J (2008)
CoryneRegNet : a reference database and analysis platform for corynebacterial gene regulatory networks.
Bielefeld (Germany): Bielefeld University.
PUB | PDF
 
2008 | Bielefelder E-Dissertation | PUB-ID: 2302950 OA
Zakotnik J (2008)
The double cut and join operation and its applications to genome rearrangements.
Bielefeld (Germany): Bielefeld University.
PUB | PDF
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2659345
Oliveira MT, Barau JG, Junqueira ACM, Feijão P, Rosa AC da, Abreu CF, Azeredo-Espin AML, Lessinger AC (2008)
Structure and evolution of the mitochondrial genomes of Haematobia irritans and Stomoxys calcitrans: The Muscidae (Diptera: Calyptratae) perspective.
Molecular Phylogenetics and Evolution 48(3): 850-857.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2308903
Cicalese F, Laber ES (2008)
Function Evaluation Via Linear Programming in the Priced Information Model.
In: Proc. ICALP 2008. 173-185.
PUB | DOI
 
2008 | Report | Veröffentlicht | PUB-ID: 2308927 OA
Cicalese F, Milanivc M (2008)
On Parsimony Haplotyping. Forschungsberichte der Technischen Fakultät, Abteilung Informationstechnik / Universität Bielefeld.
Bielefeld: Universität Bielefeld, Technische Fakultät.
PUB | PDF
 
2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2308974
Fritzilas E, Rios-Solis YA, Rahmann S (2008)
Structural Identifiability in Low-Rank Matrix Factorization.
In: Computing and Combinatorics 14th Annual International Conference, COCOON 2008 Dalian, China, June 27-29, 2008 Proceedings. Hu X, Wang J (Eds); Lecture Notes in Computer Science, 5092, Berlin u.a.: Springer: 140-148.
PUB | DOI
 
2008 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2499103
Milanivc M, Monnot J (2008)
The Complexity of the Exact Weighted Independent Set Problem.
In: Combinatorial optimization and theoretical computer science: interfaces and perspectives : 30th anniversary of the LAMSADE. 393-432.
PUB | DOI
 
2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2499108
Mixtacki J (2008)
Genome Halving under DCJ Revisited.
In: Computing and Combinatorics. 14th Annual International Conference, COCOON 2008 Dalian, China, June 27-29, 2008 Proceedings. Hu X, Wang J (Eds); Lecture Notes in Computer Science, 5092, 276-286.
PUB
 
2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919198
Quitzau JAA, Stoye J (2008)
Detecting Repeat Families in Incompletely Sequenced Genomes.
In: Proc. of WABI 2008. LNBI, 5251. 342-353.
PUB | DOI
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2498846
Boyar J, Medvedev P (2008)
The relative worst order ratio applied to seat reservation.
ACM Transactions on Algorithms 4(4): 1-22.
PUB | DOI | WoS
 
2008 | Report | Veröffentlicht | PUB-ID: 2499065
Cicalese F, Milanic M (2008)
Computing with Priced Information: game trees and the value dependent cost model.
Technische Fakultät, Universität Bielefeld.
PUB
 
2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2499072
Herms I, Rahmann S (2008)
Computing Alignment Seed Sensitivity with Probabilistic Arithmetic Automata.
In: Algorithms in Bioinformatics: 8th International Workshop, WABI 2008, Karlsruhe, Germany, September 15-19, 2008. Proceedings. Crandall KA, Lagergren J (Eds); Lecture Notes in Computer Science, 5251, Berlin u.a.: Springer: 318-329.
PUB | DOI
 
2008 | Report | Veröffentlicht | PUB-ID: 2308930 OA
Cicalese F, Milanivc M (2008)
Computing with Priced Information: game trees and the value dependent cost model. Forschungsberichte der Technischen Fakultät, Abteilung Informationstechnik / Universität Bielefeld.
Bielefeld: Universität Bielefeld, Technische Fakultät.
PUB | PDF
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2499098
Lozin VV, Milanic M (2008)
A polynomial algorithm to find an independent set of maximum weight in a fork-free graph.
J. Discr. Alg. 6(4): 595-604.
PUB | DOI
 
2008 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2499120
Rahmann S, Klau GW (2008)
Integer Linear Programming Techniques for Discovering Approximate Gene Clusters.
In: Bioinformatics Algorithms: Techniques and Applications. Mǎndoiu II, Zelikovsky A (Eds); Wiley Interscience: 203-222.
PUB | DOI
 
2008 | Report | PUB-ID: 1970459 OA
Quitzau JAA, Stoye J (2008)
A space efficient representation for sparse de Bruijn subgraphs. Forschungsberichte der Technischen Fakultät, Abteilung Informationstechnik / Universität Bielefeld.
Bielefeld: Technische Fakultät der Universität Bielefeld.
PUB | PDF
 
2008 | Report | PUB-ID: 1970461 OA
Ejaz T, Rahmann S, Stoye J (2008)
Online Abelian Pattern Matching. Forschungsberichte der Technischen Fakultät, Abteilung Informationstechnik / Universität Bielefeld.
Bielefeld: Technische Fakultät der Universität Bielefeld.
PUB | PDF
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1636699
Neuweger H, Albaum S, Dondrup M, Persicke M, Watt T, Niehaus K, Stoye J, Goesmann A (2008)
MeltDB: a software platform for the analysis and integration of metabolomics experiment data.
Bioinformatics 24(23): 2726-2732.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Bielefelder E-Dissertation | PUB-ID: 2305571 OA
Bannert C (2008)
Flexible protein annotation with sequence- and secondary structure information.
Bielefeld (Germany): Bielefeld University.
PUB | PDF
 
2008 | Lexikoneintrag | Veröffentlicht | PUB-ID: 1918834
Stoye J (2008)
Suffix Tree Construction in RAM (1997; Farach-Colton).
In: Encyclopedia of Algorithms. Kao M-Y (Ed); Springer Verlag: 925-928.
PUB | DOI
 
2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919192
Böcker S, Jahn K, Mixtacki J, Stoye J (2008)
Computation of Median Gene Clusters.
In: Proc. of RECOMB 2008. LNBI, 4955. 331-345.
PUB | DOI
 
2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919200
Bergeron A, Mixtacki J, Stoye J (2008)
On Computing the Breakpoint Reuse Rate in Rearrangement Scenarios.
In: Proc. of Recomb-CG 2008. LNBI, 5267. 226-240.
PUB | DOI
 
2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018405
Loyek C, Woermann FG, Nattkemper TW (2008)
Detection of Focal Cortical Dysplasia in MRI Using Textural Features.
In: Proceedings of BVM 2008. Berlin, Heidelberg: Springer Verlag: 432-436.
PUB | DOI
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1636280 OA
Timm W, Scherbart A, Boecker S, Kohlbacher O, Nattkemper TW (2008)
Peak intensity prediction in MALDI-TOF mass spectrometry: A machine learning study to support quantitative proteomics.
BMC Bioinformatics 9(1): 443.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592257
Schoen C, Blom J, Claus H, Schramm-Glueck A, Brandt P, Mueller T, Goesmann A, Joseph B, Konietzny S, Kurzai O, Schmitt C, Friedrich T, Linke B, Vogel U, Frosch M (2008)
Whole-genome comparison of disease and carriage strains provides insights into virulence evolution in Neisseria meningitidis.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 105(9): 3473-3478.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1587304
Hazelhurst S, Hide W, Lipták Z, Nogueira R, Starfield R (2008)
An overview of the wcd EST clustering tool.
BIOINFORMATICS 24(13): 1542-1546.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592737
Boecker S, Lipták Z, Martin M, Pervukhin A, Sudek H (2008)
DECOMP - from interpreting mass spectrometry peaks to solving the money changing problem.
BIOINFORMATICS 24(4): 591-593.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1587078
Schürmann K-B, Stoye J (2008)
Counting suffix arrays and strings.
THEORETICAL COMPUTER SCIENCE 395(2-3): 220-234.
PUB | DOI | WoS
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1586009
Krause L, Diaz NN, Edwards RA, Gartemann K-H, Krömeke H, Neuweger H, Pühler A, Runte KJ, Schlüter A, Stoye J, Szczepanowski R, Tauch A, Goesmann A (2008)
Taxonomic composition and gene content of a methane-producing microbial community isolated from a biogas reactor.
JOURNAL OF BIOTECHNOLOGY 136(1-2): 91-101.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1587052
Martin C, Diaz NN, Ontrup J, Nattkemper TW (2008)
Hyperbolic SOM-based clustering of DNA fragment features for taxonomic visualization and classification.
Bioinformatics 24(14): 1568-1574.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1586785 OA
Oehm S, Gilbert D, Tauch A, Stoye J, Goesmann A (2008)
Comparative Pathway Analyzer - a web server for comparative analysis, clustering and visualization of metabolic networks in multiple organisms.
NUCLEIC ACIDS RESEARCH 36(Web Server): W433-W437.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585939
Tauch A, Schneider J, Szczepanowski R, Tilker A, Viehöver P, Gartemann K-H, Arnold W, Blom J, Brinkrolf K, Brune I, Goetker S, Weisshaar B, Goesmann A, Droege M, Pühler A (2008)
Ultrafast pyrosequencing of Corynebacterium kroppenstedtii DSM44385 revealed insights into the physiology of a lipophilic corynebacterium that lacks mycolic acids.
Journal of Biotechnology 136(1-2): 22-30.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783364 OA
Krause L, Diaz NN, Goesmann A, Kelley S, Nattkemper TW, Rohwer F, Edwards RA, Stoye J (2008)
Phylogenetic classification of short environmental DNA fragments.
Nucleic Acids Research 36(7): 2230-2239.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919195
Bergeron A, Mixtacki J, Stoye J (2008)
HP Distance via Double Cut and Join Distance.
In: Combinatorial Pattern Matching. 19th Annual Symposium, CPM 2008, Pisa, Italy, June 18-20, 2008 Proceedings. Lecture Notes in Computer Science, 5029, 56-68.
PUB | DOI
 
2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018409
Martin C, Nattkemper TW (2008)
A Tree Index to Support Clustering Based Exploratory Data Analysis.
In: Bioinformatics Research and Development : Second International Conference, BIRD 2008 Vienna, Austria, July 7-9, 2008 Proceedings. Communications in Computer and Information Science, 13. Berlin, Heidelberg: Springer: 1-15.
PUB | DOI
 
2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018435
Scherbart A, Timm W, Böcker S, Nattkemper TW (2008)
Improved Mass Spectrometry Peak Intensity Prediction by Adaptive Feature Weighting.
In: International Conference on Neural Information Processing. Auckland, New Zealand.
PUB | DOI
 
2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018381
Albaum S, Neuweger H, Lange S, Mertens D, Runte K, Kalinowski J, Nattkemper TW, Goesmann A (2008)
ProSE - "Software as a Service" for Quantitative Proteomics (Poster abstract).
In: HUPO 7th Annual World Congress. .
PUB
 
2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018398
Herold J, Friedenberger M, Bode M, Rajpoot N, Schubert W, Nattkemper TW (2008)
Flexible Synapse Detection in Fluorescence Micrographs by Modeling Human Expert Grading.
In: Proc. of 2008 IEEE International Symposium on Biomedical Imaging. .
PUB | DOI
 
2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018432
Scherbart A, Nattkemper TW (2008)
The Diversity of Regression Ensembles Combining Bagging and Random Subspace Method.
In: International Conference on Neural Information Processing. .
PUB | DOI
 
2007 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018412
Martin C, Díaz Solórzano NN, Ontrup J, Nattkemper TW (2007)
Genome feature exploration using hyperbolic Self-Organizing Maps.
In: Proceedings of the 6th International Workshop on Self-Organizing Maps (WSOM 2007). Bielefeld: Bielefeld University.
PUB | DOI
 
2007 | Report | Veröffentlicht | PUB-ID: 2499308
Escoffier B, Milanič M, Paschos VT (2007)
Simple and fast reoptimizations for the Steiner tree problem.
DIMACS, Center for Discrete Mathematics and Theoretical Computer Science, NJ.
PUB
 
2007 | Report | Veröffentlicht | PUB-ID: 2308810 OA
Böcker S, Letzel M, Lipták Z, Pervukhin A (2007)
Identifying metabolites with integer decomposition techniques, using only their mass spectrometric isotope patterns. Forschungsberichte der Technischen Fakultät, Abteilung Informationstechnik / Universität Bielefeld.
Bielefeld: Technical Faculty, Bielefeld University.
PUB | PDF
 
2007 | Bielefelder E-Dissertation | PUB-ID: 2302005 OA
Krause L (2007)
From single genomes to natural microbial communities : novel methods for the high-throughput analysis of genomic sequences.
Bielefeld (Germany): Bielefeld University.
PUB | PDF
 
2007 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2499472
Lozin VV, Milanic M (2007)
Tree-width and Optimization in Bounded Degree Graphs.
In: Proc. 33rd International Workshop on Graph-Theoretic Concepts in Computer Science (WG 2007). 4769. 45-54.
PUB | DOI
 
2007 | Bielefelder E-Dissertation | PUB-ID: 2305131 OA
Carvalho Junior SA de (2007)
Algorithms for improving the design and production of oligonucleotide microarrays.
Bielefeld (Germany): Bielefeld University.
PUB | PDF
 
2007 | Report | Veröffentlicht | PUB-ID: 2308854 OA
Cicalese F, Quitzau JAA (2007)
2-Stage Fault Tolerant Interval Group Testing. Forschungsberichte der Technischen Fakultät, Abteilung Informationstechnik / Universität Bielefeld.
Bielefeld: Universität Bielefeld, Technische Fakultät.
PUB | PDF
 
2007 | Report | Veröffentlicht | PUB-ID: 2499449
Kaminski M, Lozin VV, Milanic M (2007)
Recent Developments on Graphs of Bounded Clique-width.
Rutgers Center for Operations Research, Rutgers University, NJ.
PUB
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2499456
Klau GW, Rahmann S, Schliep A, Vingron M, Reinert K (2007)
Integer linear programming approaches for non-unique probe selection.
Discrete Applied Mathematics 155(6-7): 840-856.
PUB | DOI | WoS
 
2007 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 1918828
Schmidt T, Stoye J (2007)
Chapter 12: Gecko and GhostFam - Rigorous and Efficient Gene Cluster Detection in Prokaryotic Genomes.
In: Comparative Genomics, Volume 2. Bergman NH (Ed); Methods in Molecular Biology, 396. Totowa, NJ: Humana Press Inc.: 165-182.
PUB | DOI | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2499284
Cicalese F, Damaschke P, Tansini L, Werth S (2007)
Overlaps help: Improved bounds for group testing with interval queries.
Discrete Applied Mathematics 155(3): 288-299.
PUB | DOI | WoS
 

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