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414 Publikationen

2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1929860
Schwientek P, Ellinghaus P, Steppan S, et al. Global gene expression analysis in nonfailing and failing myocardium pre- and postpulsatile and nonpulsatile ventricular assist device support. PHYSIOLOGICAL GENOMICS. 2010;42(3):397-405.
PUB | DOI | WoS | PubMed | Europe PMC
 
2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1930110
Joseph B, Schneiker-Bekel S, Schramm-Glueck A, et al. Comparative Genome Biology of a Serogroup B Carriage and Disease Strain Supports a Polygenic Nature of Meningococcal Virulence. JOURNAL OF BACTERIOLOGY. 2010;192(20):5363-5377.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589663
Bergeron A, Mixtacki J, Stoye J. A New Linear Time Algorithm to Compute the Genomic Distance via the Double Cut and Join Distance. Theoretical Computer Science. 2009;410(51):5300-5316.
PUB | DOI | WoS
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2427059
Escoffier B, Milanič M, Paschos VT. Simple and fast reoptimizations for the Steiner tree problem. Algorithmic Operations Research. 2009;4(2):86-94.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2308924
Cicalese F, Milanic M. Competitive evaluation of threshold functions in the priced information model. Annals of Operations Research. 2009;188(1):111-132.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2426437
Bunkowski A, Bödeker B, Bader S, Westhoff M, Litterst P, Baumbach JI. MCC/IMS signals in human breath related to sarcoidosis-results of a feasibility study using an automated peak finding procedure. Journal of Breath Research. 2009;3(4):046001.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2426487
Böcker S, Lipták Z, Pervukhin A, Letzel MC. SIRIUS: decomposing isotope patterns for metabolite identification. Bioinformatics. 2009;25(2):218-224.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Preprint | Veröffentlicht | PUB-ID: 2426653
Cicalese F, Jacobs T, Laber ES, Molinaro M. On the Complexity of Searching in Trees: Average-case Minimization. 2009.
PUB | arXiv
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2426660
Cicalese F, Manne F, Xin Q. Faster Deterministic Communication in Radio Networks. Algorithmica. 2009;54(2):226-242.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2427118
Engelmann JA, Rahmann S, Wolf M, et al. Modeling cross-hybridization on phylogenetic DNA microarrays increases the detection power of closely related species. Molecular Ecology Resources. 2009;9(1):83-93.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Bielefelder E-Dissertation | PUB-ID: 2305073
Oehm S. Comparing organisms on the level of metabolism. Bielefeld (Germany): Bielefeld University; 2009.
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2009 | Bielefelder E-Dissertation | PUB-ID: 2301318
Neuweger H. MeltDB : a software platform for the analysis and integration of metabolomics experiment data. Bielefeld (Germany): Bielefeld University; 2009.
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2009 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2659405
Feijão P, Meidanis J. SCJ: A Variant of Breakpoint Distance for Which Sorting, Genome Median and Genome Halving Problems Are Easy. In: Salzberg SL, Warnow T, eds. Algorithms in Bioinformatics. Lecture Notes in Computer Science. Vol 5724. 2009: 85-96.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2427161
Kamiński M, Lozin VV, Milanič M. Recent developments on graphs of bounded clique-width. Discrete Appl. Math. 2009;157(12):2747-2761.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2427173
Kamiński M, Medvedev P, Milanič M. On the plane-width of graphs. Electronic Notes in Discrete Mathematics. 2009;34:633-637.
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2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919206
Dias Vieira Braga M, Stoye J. Counting All DCJ Sorting Scenarios. In: Proc. of Recomb-CG 2009. LNBI. Vol 5817. 2009: 36-47.
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2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2426605
Cicalese F, Fici G, Lipták Z. Searching for Jumbled Patterns in Strings. In: Proc. of the Prague Stringology Conference 2009. 2009: 105-117.
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2009 | Bielefelder E-Dissertation | PUB-ID: 2303240
Gagie T. New algorithms and lower bounds for sequential-access data compression. Bielefeld (Germany): Bielefeld University; 2009.
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2009 | Bielefelder E-Dissertation | PUB-ID: 2302608
Herms I. Probabilistic arithmetic automata : applications of a stochastic computational framework in biological sequence analysis. Bielefeld (Germany): Bielefeld University; 2009.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2406118
Välimäki N, Mäkinen V, Gerlach W, Dixit K. Engineering a compressed suffix tree implementation. Journal of Experimental Algorithmics (JEA). 2009;14:4.2-2:4.23.
PUB | DOI
 
2009 | Bielefelder E-Dissertation | PUB-ID: 2304745
Fritzilas E. Combinatorial aspects of low-rank matrix factorization and two applications in bioinformatics. Bielefeld (Germany): Bielefeld University; 2009.
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2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919207
Blin G, Stoye J. Finding Nested Common Intervals Efficiently. In: Proc. of Recomb-CG 2009. LNBI. Vol 5817. 2009: 59-69.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018390
Herold J, Abouna S, Zhou L, et al. A way towards analyzing high-content bioimage data by means of semantic annotation and visual data mining. In: SPIE Medical Imaging. 2009.
PUB | DOI
 
2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018422
Ontrup J, Ehnert N, Bergmann M, Nattkemper TW. BIIGLE - Web 2.0 enabled labelling and exploring of images from the Arctic deep-sea observatory HAUSGARTEN. In: OCEANS 2009 - Europe. Bremen; 2009.
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2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018427
Qureshi H, Rajpoot N, Nattkemper TW, Hans V. A Robust Adaptive Wavelet-based Method for Classification of Meningioma Histology Images. In: MICCAI«2009 Workshop on Optical Tissue Image Analysis in Microscopy, Histology, and Endoscopy. 2009.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783187
Blom J, Albaum S, Doppmeier D, et al. EDGAR: a software framework for the comparative analysis of prokaryotic genomes. BMC Bioinformatics. 2009;10(1): 154.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1636062
Ontrup J, Ritter H, Scholz S, Wagner R. Detecting, Assessing, and Monitoring Relevant Topics in Virtual Information Environments. IEEE Transactions on Knowledge and Data Engineering. 2009;21(3):415-427.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1898137
Jahn K, Stoye J. Approximative Gencluster und ihre Anwendung in der komparativen Genomik. Informatik-Spektrum. 2009;32(4):288-300.
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2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1893884
Husemann P, Stoye J. Phylogenetic Comparative Assembly. In: Proc. of WABI 2009. LNBI. Vol 5724. 2009: 145-156.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635314
Diaz NN, Krause L, Goesmann A, Niehaus K, Nattkemper TW. TACOA - Taxonomic classification of environmental genomic fragments using a kernelized nearest neighbor approach. BMC Bioinformatics. 2009;10(1):56.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1635321
Dondrup M, Albaum S, Griebel T, et al. EMMA 2-A MAGE-compliant system for the collaborative analysis and integration of microarray data. BMC Bioinformatics. 2009;10(1): 50.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1591507
Stoye J, Wittler R. A Unified Approach for Reconstructing Ancient Gene Clusters. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 2009;6(3):387-400.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589098
Gerlach W, Jünemann S, Tille F, Goesmann A, Stoye J. WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads. BMC Bioinformatics. 2009;10(1):430.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1589531
Albaum S, Neuweger H, Fraenzel B, et al. Qupe-a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments. Bioinformatics. 2009;25(23):3128-3134.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1590204
Brudno M, Medvedev P, Stoye J, De La Vega FM. A report on the 2009 SIG on short read sequencing and algorithms (Short-SIG). BIOINFORMATICS. 2009;25(21):2863-2864.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588783
Purser A, Bergmann M, Ontrup J, Nattkemper TW. Use of machine-learning algorithms for the automated detection of cold-water coral habitats: a pilot study. Marine Ecology Progress Series. 2009;397:241-251.
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2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1898105
Böcker S, Jahn K, Mixtacki J, Stoye J. Computation of Median Gene Clusters. Journal of Computational Biology. 2009;16(8):1085-1099.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1591319
Hoffmann N, Stoye J. ChromA: signal-based retention time alignment for chromatography-mass spectrometry data. Bioinformatics. 2009;25(16):2080-2081.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588760
Dias Vieira Braga M, Gautier C, Sagot M-F. An asymmetric approach to preserve common intervals while sorting by reversals. Algorithms for Molecular Biology. 2009;4(1):16.
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2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919209
Medvedev P, Stoye J. Rearrangement Models and Single-Cut Operations. In: Comparative Genomics : International Workshop, RECOMB-CG 2009, Budapest, Hungary, September 27-29, 2009. Proceedings. Lecture Notes in Computer Science. Vol 5817. Berlin, Heidelberg: Springer; 2009: 84-97.
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2009 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018440
Schoening T, Ehnert N, Ontrup J, Nattkemper TW. BIIGLE Tools - A Web 2.0 Approach for Visual Bioimage Database Mining. In: IV 09 - Intl. Conference on Information Visualization. 2009.
PUB | DOI
 
2009 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 1918945
Stoye J. Computational Short Read Metagenomics. Presented at the JOBIM 2009, Nantes, France.
PUB
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634447
Bekel T, Henckel K, Küster H, et al. The Sequence Analysis and Management System - SAMS-2.0: Data management and sequence analysis adapted to changing requirements from traditional sanger sequencing to ultrafast sequencing technologies. Journal of Biotechnology. 2009;140(1-2):3-12.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1634615
Zeschnigk M, Martin M, Betzl G, et al. Massive parallel bisulfite sequencing of CG-rich DNA fragments reveals that methylation of many X-chromosomal CpG islands in female blood DNA is incomplete. HUMAN MOLECULAR GENETICS. 2009;18(8):1439-1448.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2427252
Alekseev VE, Lozin VV, Malyshev D, Milanič M. The Maximum Independent Set Problem in Planar Graphs. In: Proc. MFCS 2008. 2008: 96-107.
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2008 | Bielefelder E-Dissertation | PUB-ID: 2306324
Baumbach J. CoryneRegNet : a reference database and analysis platform for corynebacterial gene regulatory networks. Bielefeld (Germany): Bielefeld University; 2008.
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2008 | Bielefelder E-Dissertation | PUB-ID: 2302950
Zakotnik J. The double cut and join operation and its applications to genome rearrangements. Bielefeld (Germany): Bielefeld University; 2008.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2659345
Oliveira MT, Barau JG, Junqueira ACM, et al. Structure and evolution of the mitochondrial genomes of Haematobia irritans and Stomoxys calcitrans: The Muscidae (Diptera: Calyptratae) perspective. Molecular Phylogenetics and Evolution. 2008;48(3):850-857.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2308903
Cicalese F, Laber ES. Function Evaluation Via Linear Programming in the Priced Information Model. In: Proc. ICALP 2008. 2008: 173-185.
PUB | DOI
 
2008 | Report | Veröffentlicht | PUB-ID: 2308927
Cicalese F, Milanivc M. On Parsimony Haplotyping. Forschungsberichte der Technischen Fakultät, Abteilung Informationstechnik / Universität Bielefeld. Bielefeld: Universität Bielefeld, Technische Fakultät; 2008.
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2308974
Fritzilas E, Rios-Solis YA, Rahmann S. Structural Identifiability in Low-Rank Matrix Factorization. In: Hu X, Wang J, eds. Computing and Combinatorics 14th Annual International Conference, COCOON 2008 Dalian, China, June 27-29, 2008 Proceedings. Lecture Notes in Computer Science, 5092. Berlin u.a.: Springer; 2008: 140-148.
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2008 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2499103
Milanivc M, Monnot J. The Complexity of the Exact Weighted Independent Set Problem. In: Combinatorial optimization and theoretical computer science: interfaces and perspectives : 30th anniversary of the LAMSADE. 2008: 393-432.
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2499108
Mixtacki J. Genome Halving under DCJ Revisited. In: Hu X, Wang J, eds. Computing and Combinatorics. 14th Annual International Conference, COCOON 2008 Dalian, China, June 27-29, 2008 Proceedings. Lecture Notes in Computer Science, 5092. 2008: 276-286.
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919198
Quitzau JAA, Stoye J. Detecting Repeat Families in Incompletely Sequenced Genomes. In: Proc. of WABI 2008. LNBI. Vol 5251. 2008: 342-353.
PUB | DOI
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2498846
Boyar J, Medvedev P. The relative worst order ratio applied to seat reservation. ACM Transactions on Algorithms. 2008;4(4):1-22.
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2008 | Report | Veröffentlicht | PUB-ID: 2499065
Cicalese F, Milanic M. Computing with Priced Information: game trees and the value dependent cost model. Technische Fakultät, Universität Bielefeld; 2008.
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2499072
Herms I, Rahmann S. Computing Alignment Seed Sensitivity with Probabilistic Arithmetic Automata. In: Crandall KA, Lagergren J, eds. Algorithms in Bioinformatics: 8th International Workshop, WABI 2008, Karlsruhe, Germany, September 15-19, 2008. Proceedings. Lecture Notes in Computer Science, 5251. Berlin u.a.: Springer; 2008: 318-329.
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2008 | Report | Veröffentlicht | PUB-ID: 2308930
Cicalese F, Milanivc M. Computing with Priced Information: game trees and the value dependent cost model. Forschungsberichte der Technischen Fakultät, Abteilung Informationstechnik / Universität Bielefeld. Bielefeld: Universität Bielefeld, Technische Fakultät; 2008.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2499098
Lozin VV, Milanic M. A polynomial algorithm to find an independent set of maximum weight in a fork-free graph. J. Discr. Alg. 2008;6(4):595-604.
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2008 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2499120
Rahmann S, Klau GW. Integer Linear Programming Techniques for Discovering Approximate Gene Clusters. In: Mǎndoiu II, Zelikovsky A, eds. Bioinformatics Algorithms: Techniques and Applications. Wiley Interscience; 2008: 203-222.
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2008 | Report | PUB-ID: 1970459
Quitzau JAA, Stoye J. A space efficient representation for sparse de Bruijn subgraphs. Forschungsberichte der Technischen Fakultät, Abteilung Informationstechnik / Universität Bielefeld. Bielefeld: Technische Fakultät der Universität Bielefeld; 2008.
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2008 | Report | PUB-ID: 1970461
Ejaz T, Rahmann S, Stoye J. Online Abelian Pattern Matching. Forschungsberichte der Technischen Fakultät, Abteilung Informationstechnik / Universität Bielefeld. Bielefeld: Technische Fakultät der Universität Bielefeld; 2008.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1636699
Neuweger H, Albaum S, Dondrup M, et al. MeltDB: a software platform for the analysis and integration of metabolomics experiment data. Bioinformatics. 2008;24(23):2726-2732.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Bielefelder E-Dissertation | PUB-ID: 2305571
Bannert C. Flexible protein annotation with sequence- and secondary structure information. Bielefeld (Germany): Bielefeld University; 2008.
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919192
Böcker S, Jahn K, Mixtacki J, Stoye J. Computation of Median Gene Clusters. In: Proc. of RECOMB 2008. LNBI. Vol 4955. 2008: 331-345.
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919200
Bergeron A, Mixtacki J, Stoye J. On Computing the Breakpoint Reuse Rate in Rearrangement Scenarios. In: Proc. of Recomb-CG 2008. LNBI. Vol 5267. 2008: 226-240.
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2008 | Lexikoneintrag | Veröffentlicht | PUB-ID: 1918834
Stoye J. Suffix Tree Construction in RAM (1997; Farach-Colton). In: Kao M-Y, ed. Encyclopedia of Algorithms. Springer Verlag; 2008: 925-928.
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018405
Loyek C, Woermann FG, Nattkemper TW. Detection of Focal Cortical Dysplasia in MRI Using Textural Features. In: Proceedings of BVM 2008. Berlin, Heidelberg: Springer Verlag; 2008: 432-436.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1636280
Timm W, Scherbart A, Boecker S, Kohlbacher O, Nattkemper TW. Peak intensity prediction in MALDI-TOF mass spectrometry: A machine learning study to support quantitative proteomics. BMC Bioinformatics. 2008;9(1):443.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592257
Schoen C, Blom J, Claus H, et al. Whole-genome comparison of disease and carriage strains provides insights into virulence evolution in Neisseria meningitidis. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2008;105(9):3473-3478.
PUB | DOI | WoS | PubMed | Europe PMC | GenBank
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1587304
Hazelhurst S, Hide W, Lipták Z, Nogueira R, Starfield R. An overview of the wcd EST clustering tool. BIOINFORMATICS. 2008;24(13):1542-1546.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1592737
Boecker S, Lipták Z, Martin M, Pervukhin A, Sudek H. DECOMP - from interpreting mass spectrometry peaks to solving the money changing problem. BIOINFORMATICS. 2008;24(4):591-593.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1587078
Schürmann K-B, Stoye J. Counting suffix arrays and strings. THEORETICAL COMPUTER SCIENCE. 2008;395(2-3):220-234.
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2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1587052
Martin C, Diaz NN, Ontrup J, Nattkemper TW. Hyperbolic SOM-based clustering of DNA fragment features for taxonomic visualization and classification. Bioinformatics. 2008;24(14):1568-1574.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1586009
Krause L, Diaz NN, Edwards RA, et al. Taxonomic composition and gene content of a methane-producing microbial community isolated from a biogas reactor. JOURNAL OF BIOTECHNOLOGY. 2008;136(1-2):91-101.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1586785
Oehm S, Gilbert D, Tauch A, Stoye J, Goesmann A. Comparative Pathway Analyzer - a web server for comparative analysis, clustering and visualization of metabolic networks in multiple organisms. NUCLEIC ACIDS RESEARCH. 2008;36(Web Server):W433-W437.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1585939
Tauch A, Schneider J, Szczepanowski R, et al. Ultrafast pyrosequencing of Corynebacterium kroppenstedtii DSM44385 revealed insights into the physiology of a lipophilic corynebacterium that lacks mycolic acids. Journal of Biotechnology. 2008;136(1-2):22-30.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1783364
Krause L, Diaz NN, Goesmann A, et al. Phylogenetic classification of short environmental DNA fragments. Nucleic Acids Research. 2008;36(7):2230-2239.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919195
Bergeron A, Mixtacki J, Stoye J. HP Distance via Double Cut and Join Distance. In: Combinatorial Pattern Matching. 19th Annual Symposium, CPM 2008, Pisa, Italy, June 18-20, 2008 Proceedings. Lecture Notes in Computer Science, 5029. 2008: 56-68.
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018409
Martin C, Nattkemper TW. A Tree Index to Support Clustering Based Exploratory Data Analysis. In: Bioinformatics Research and Development : Second International Conference, BIRD 2008 Vienna, Austria, July 7-9, 2008 Proceedings. Communications in Computer and Information Science. Vol 13. Berlin, Heidelberg: Springer; 2008: 1-15.
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018435
Scherbart A, Timm W, Böcker S, Nattkemper TW. Improved Mass Spectrometry Peak Intensity Prediction by Adaptive Feature Weighting. In: International Conference on Neural Information Processing. Auckland, New Zealand; 2008.
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018381
Albaum S, Neuweger H, Lange S, et al. ProSE - "Software as a Service" for Quantitative Proteomics (Poster abstract). In: HUPO 7th Annual World Congress. 2008.
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018398
Herold J, Friedenberger M, Bode M, Rajpoot N, Schubert W, Nattkemper TW. Flexible Synapse Detection in Fluorescence Micrographs by Modeling Human Expert Grading. In: Proc. of 2008 IEEE International Symposium on Biomedical Imaging. 2008.
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2008 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018432
Scherbart A, Nattkemper TW. The Diversity of Regression Ensembles Combining Bagging and Random Subspace Method. In: International Conference on Neural Information Processing. 2008.
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2007 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2018412
Martin C, Díaz Solórzano NN, Ontrup J, Nattkemper TW. Genome feature exploration using hyperbolic Self-Organizing Maps. In: Proceedings of the 6th International Workshop on Self-Organizing Maps (WSOM 2007). Bielefeld: Bielefeld University; 2007.
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2007 | Report | Veröffentlicht | PUB-ID: 2499308
Escoffier B, Milanič M, Paschos VT. Simple and fast reoptimizations for the Steiner tree problem. DIMACS, Center for Discrete Mathematics and Theoretical Computer Science, NJ; 2007.
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2007 | Report | Veröffentlicht | PUB-ID: 2308810
Böcker S, Letzel M, Lipták Z, Pervukhin A. Identifying metabolites with integer decomposition techniques, using only their mass spectrometric isotope patterns. Forschungsberichte der Technischen Fakultät, Abteilung Informationstechnik / Universität Bielefeld. Bielefeld: Technical Faculty, Bielefeld University; 2007.
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2007 | Bielefelder E-Dissertation | PUB-ID: 2302005
Krause L. From single genomes to natural microbial communities : novel methods for the high-throughput analysis of genomic sequences. Bielefeld (Germany): Bielefeld University; 2007.
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2007 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2499472
Lozin VV, Milanic M. Tree-width and Optimization in Bounded Degree Graphs. In: Proc. 33rd International Workshop on Graph-Theoretic Concepts in Computer Science (WG 2007). Vol 4769. 2007: 45-54.
PUB | DOI
 
2007 | Bielefelder E-Dissertation | PUB-ID: 2305131
Carvalho Junior SA de. Algorithms for improving the design and production of oligonucleotide microarrays. Bielefeld (Germany): Bielefeld University; 2007.
PUB | PDF
 
2007 | Report | Veröffentlicht | PUB-ID: 2308854
Cicalese F, Quitzau JAA. 2-Stage Fault Tolerant Interval Group Testing. Forschungsberichte der Technischen Fakultät, Abteilung Informationstechnik / Universität Bielefeld. Bielefeld: Universität Bielefeld, Technische Fakultät; 2007.
PUB | PDF
 
2007 | Report | Veröffentlicht | PUB-ID: 2499449
Kaminski M, Lozin VV, Milanic M. Recent Developments on Graphs of Bounded Clique-width. Rutgers Center for Operations Research, Rutgers University, NJ; 2007.
PUB
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2499456
Klau GW, Rahmann S, Schliep A, Vingron M, Reinert K. Integer linear programming approaches for non-unique probe selection. Discrete Applied Mathematics. 2007;155(6-7):840-856.
PUB | DOI | WoS
 
2007 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 1918828
Schmidt T, Stoye J. Chapter 12: Gecko and GhostFam - Rigorous and Efficient Gene Cluster Detection in Prokaryotic Genomes. In: Bergman NH, ed. Comparative Genomics, Volume 2. Methods in Molecular Biology. Vol 396. Totowa, NJ: Humana Press Inc.; 2007: 165-182.
PUB | DOI | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2499284
Cicalese F, Damaschke P, Tansini L, Werth S. Overlaps help: Improved bounds for group testing with interval queries. Discrete Applied Mathematics. 2007;155(3):288-299.
PUB | DOI | WoS
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2499429
Gerlach D, Wolf M, Dandekar T, Müller T, Pokorny A, Rahmann S. Deep Metazoan Phylogeny. In Silico Biology. 2007;7:Article 15.
PUB
 
2007 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2499467
Lozin VV, Milanic M. Maximum independent sets in graphs of low degree. In: Proc. 18th Annual ACM-SIAM Symposium on Discrete Algorithms (SODA 2007). 2007: 874-880.
PUB
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2499481
Rahmann S, Wittkop T, Baumbach J, Martin M, Truss A, Böcker S. Exact and Heuristic Algorithms for Weighted Cluster Editing. Comput Syst Bioinformatics Conf. 2007;6(1):391-401.
PUB | PubMed | Europe PMC
 
2007 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2499135
Baumbach J, Bunkowski A, Lange S, et al. IMS2- An integrated medical software system for early lung cancer detection using ion mobility spectrometry data of human breath. Journal of Integrative Bioinformatics. 2007;4(3):75.
PUB | DOI
 
2007 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2499279
Cicalese F, Amgarten Quitzau JA. 2-Stage Fault Tolerant Interval Group Testing. In: Tokuyama T, ed. Algorithms and Computation. 18th International Symposium, ISAAC 2007, Sendai, Japan, December 17-19, 2007. Proceedings. Lecture notes in computer science, 4835. 2007: 858-868.
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