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412 Publikationen

2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2912492
N. Luhmann, D. Dörr, and C. Chauve, “Comparative scaffolding and gap filling of ancient bacterial genomes applied to two ancient Yersinia pestis genomes”, Microbial Genomics, 2017, 3.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913556
S. Jünemann, N. Kleinbölting, S. Jaenicke, C. Henke, J. Hassa, J. Nelkner, Y. Stolze, S. Albaum, A. Schlüter, A. Goesmann, et al., “Bioinformatics for NGS-based metagenomics and the application to biogas research”, Journal of Biotechnology, 2017, 261, 10-23.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2913015
D. Rubert, G. L. Medeiros, E. A. Hoshino, M. Dias Vieira Braga, J. Stoye, and F. H. V. Martinez, in Comparative Genomics. RECOMB-CG 2017 (Eds.: J. Meidanis, L. Nakhleh), Springer Verlag, Cham, 2017, p. 76-100.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909057
D. Rubert, P. Feijão, M. Dias Vieira Braga, J. Stoye, and F. H. V. Martinez, “Approximating the DCJ distance of balanced genomes in linear time”, Algorithms for Molecular Biology, 2017, 12, : 3.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2017 | Bielefelder E-Dissertation | PUB-ID: 2909213
N. Luhmann, Phylogenetic assembly of paleogenomes integrating ancient DNA data, Universität Bielefeld, Bielefeld, 2017.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916552
P. H. da Silva, R. Machado, S. Dantas, and M. Dias Vieira Braga, “Genomic Distance with High Indel Costs”, IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2017, 14, 728-732.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2909409
L. Cunha, S. Dantas, T. Gagie, R. Wittler, L. Kowada, and J. Stoye, in Proceedings of CPM 2017, 2017, p. 19:1-19:9.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911814
D. Dörr, M. Balaban, P. Feijão, and C. Chauve, “The gene family-free median of three”, Algorithms for Molecular Biology, 2017, 12, : 14.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Preprint | Veröffentlicht | PUB-ID: 2908521
L. Cunha, S. Dantas, T. Gagie, R. Wittler, L. Kowada, and J. Stoye, “Faster Jumbled Indexing for Binary Run-Length Encoded Strings”, arXiv: 1702.01280, 2017.
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2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2907587
G. Holley, R. Wittler, J. Stoye, and F. Hach, in Proceedings of RECOMB 2017, 2017, p. 50-65.
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2017 | Sammelwerksbeitrag | Im Druck | PUB-ID: 2913924
Y. Anselmetti, N. Luhmann, S. Bérard, E. Tannier, and C. Chauve, in Comparative Genomics (Eds.: J.C. Setubal, P. Stadler, J. Stoye), Springer Verlag, In Press.
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2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2913016
T. Schulz, J. Stoye, and D. Dörr, in Proceedings of RECOMB-CG 2017, Springer Verlag, Berlin, 2017, p. 197-212.
PUB | DOI
 
2017 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2908574
N. Luhmann, M. Lafond, A. Thévenin, A. Ouangraoua, R. Wittler, and C. Chauve, “The SCJ Small Parsimony Problem for Weighted Gene Adjacencies”, IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2017, 14.
PUB | DOI | PubMed | Europe PMC
 
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909967
D. Dörr, L. A. B. Kowada, F. E. Soares de Araujo, S. Deshpande, S. Dantas, B. M. E. Moret, and J. Stoye, “New Genome Similarity Measures based on Conserved Gene Adjacencies”, Journal of Computational Biology, 2017, 24, 616-634.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901477
S. E. Ahmed Raza, D. Langenkämper, K. Sirinukunwattana, D. Epstein, T. W. Nattkemper, and N. M. Rajpoot, “Robust normalization protocols for multiplexed fluorescence bioimage analysis”, BioData Mining, 2016, 9, : 11.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905930
S. Winter, K. Jahn, S. Wehner, L. Kuchenbecker, M. Marz, J. Stoye, and S. Böcker, “Finding approximate gene clusters with GECKO 3”, Nucleic Acids Research, 2016, 44, 9600-9610.
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2016 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2903708
D. Rubert, P. Feijão, M. Dias Vieira Braga, J. Stoye, and F. H. V. Martinez, in Algorithms in Bioinformatics. WABI 2016 (Eds.: M. Frith, C.N. Storm Pedersen), Springer, Cham, 2016, p. 293-306.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900129
G. Holley, R. Wittler, and J. Stoye, “Bloom Filter Trie: an alignment-free and reference-free data structure for pan-genome storage”, Algorithms for Molecular Biology, 2016, 11, : 3.
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2016 | Bielefelder E-Dissertation | PUB-ID: 2902049
D. Dörr, Gene family-free genome comparison, Universität Bielefeld, Bielefeld, 2016.
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2016 | Bielefelder E-Dissertation | PUB-ID: 2906743
A. Bremges, Assembling the microbial dark matter, Universität Bielefeld, Bielefeld, 2016.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900943
D. Langenkämper, T. Jakobi, D. Feld, L. Jelonek, A. Goesmann, and T. W. Nattkemper, “Comparison of Acceleration Techniques for Selected Low-Level Bioinformatics Operations”, Frontiers in Genetics, 2016, 7, : 5.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900421
L. Krause, K. Nones, K. A. Loffler, D. Nancarrow, H. Oey, Y. H. Tang, N. J. Wayte, A. M. Patch, K. Patel, S. Brosda, et al., “Identification of the CIMP-like subtype and aberrant methylation of members of the chromosomal segregation and spindle assembly pathways in esophageal adenocarcinoma”, Carcinogenesis, 2016, 37, 356-365.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2900111
L. A. B. Kowada, D. Doerr, S. Dantas, and J. Stoye, in Research in Computational Molecular Biology. RECOMB 2016 (Ed.: M. Singh), Springer, 2016, p. 204-224.
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2016 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2901740
N. Luhmann, A. Thévenin, A. Ouangraoua, R. Wittler, and C. Chauve, in Proceedings 12th International Symposium, ISBRA 2016, Springer International Publishing, 2016, p. 200-210.
PUB | DOI | Download (ext.) | arXiv
 
2016 | Konferenzband | Veröffentlicht | PUB-ID: 2912258
“Genfamilienfreier Genomvergleich”, LNI, 2016, D-16, 91-100.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911748
T. Krahn, D. Wibberg, I. Maus, A. Winkler, A. Pühler, L. Poirel, and A. Schlüter, “Complete Genome Sequence ofAcinetobacter baumanniiCIP 70.10, a Susceptible Reference Strain for Comparative Genome Analyses”, Genome Announcements, 2015, 3, e00850-15.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2677844
M. Dias Vieira Braga, and J. Stoye, “Sorting linear genomes with rearrangements and indels”, IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2015, 12, 500-506.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2726366
F. H. Viduani Martinez, P. Feijão, M. Dias Vieira Braga, and J. Stoye, “On the family-free DCJ distance and similarity”, Algorithms for Molecular Biology, 2015, 10, : 13.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2715682
P. Henning, J. L. Kuich, N. Hoffmann, and K. Stefan, “Maui-VIA: a user-friendly software for visual identification, alignment, correction, and quantification of gas chromatography–mass spectrometry data”, Frontiers in Bioengineering and Biotechnology, 2015, 2.
PUB | DOI | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2766708
C. Chen, C. Bartenhagen, M. Gombert, V. Okpanyi, V. Binder, S. Röttgers, J. Bradtke, A. Teigler-Schlegel, J. Harbott, S. Ginzel, et al., “Next-generation-sequencing of recurrent childhood high hyperdiploid acute lymphoblastic leukemia reveals mutations typically associated with high risk patients”, Leukemia research, 2015.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764612
R. Wittler, T. Marschall, A. Schönhuth, and V. Makinen, “Repeat- and error-aware comparison of deletions”, Bioinformatics, 2015, 31, 2947-2954.
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2015 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2757497
G. Holley, R. Wittler, and J. Stoye, in Proceedings of WABI 2015, 2015, p. 217-230.
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2015 | Bielefelder E-Dissertation | PUB-ID: 2786037
R. Hilker, Development of a read mapping analysis software and computational pan genome analysis of 20 Pseudomonas aeruginosa strains, Bielefeld University, Bielefeld, 2015.
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2015 | Konferenzband | Veröffentlicht | PUB-ID: 2780229
“Proceedings of the 13th Annual Research in Computational Molecular Biology (RECOMB) Satellite Workshop on Comparative Genomics: Bioinformatics”, BMC Bioinformatics, 2015, 16.
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2015 | Konferenzband | Veröffentlicht | PUB-ID: 2780232
“Proceedings of the 13th Annual Research in Computational Molecular Biology (RECOMB) Satellite Workshop on Comparative Genomics: Genomics”, BMC Genomics, 2015, 16.
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2014 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2684241
F. H. Viduani Martinez, P. Feijão, M. Dias Vieira Braga, and J. Stoye, in Algorithms in Bioinformatics. WABI 2014 (Eds.: D. Brown, B. Morgenstern), Springer Verlag, Berlin ; Heidelberg, 2014, p. 174-186.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2687033
D. Dörr, J. Stoye, S. Böcker, and K. Jahn, “Identifying Gene Clusters by Discovering Common Intervals in Indeterminate Strings”, BMC Genomics, 2014, 15, S2.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2685362
M. Lechner, M. Hernandez-Rosales, D. Dörr, N. Wieseke, A. Thévenin, J. Stoye, R. K. Hartmann, S. J. Prohaska, and P. F. Stadler, “Orthology Detection Combining Clustering and Synteny for Very Large Datasets”, PLoS ONE, 2014, 9, e105015.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2689773
S. Jünemann, K. Prior, A. Albersmeier, S. Albaum, J. Kalinowski, A. Goesmann, J. Stoye, and D. Harmsen, “GABenchToB: A Genome Assembly Benchmark Tuned on Bacteria and Benchtop Sequencers”, PLOS ONE, 2014, 9, e107014.
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2014 | Bielefelder E-Dissertation | PUB-ID: 2723541
C. Ander, Bioinformatic methods for the analysis and comparison of metagenomes and metatranscriptomes, Universitätsbibliothek Bielefeld, Bielefeld, 2014.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2674387
R. Hilker, K. B. Stadermann, D. Doppmeier, J. Kalinowski, J. Stoye, J. Straube, J. Winnebald, and A. Goesmann, “ReadXplorer - Visualization and Analysis of Mapped Sequences”, Bioinformatics, 2014, 30, 2247-2254.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2665038
P. Schwientek, A. Neshat, J. Kalinowski, A. Klein, C. Rückert, S. Schneiker-Bekel, S. Wendler, J. Stoye, and A. Pühler, “Improving the genome annotation of the acarbose producer Actinoplanes sp. SE50/110 by sequencing enriched 5'-ends of primary transcripts”, Journal of Biotechnology, 2014, 190, 85-95.
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2014 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2690122
N. Luhmann, C. Chauve, J. Stoye, and R. Wittler, in Proc. of BSB 2014 (Ed.: C. Sérgio), Springer Verlag, 2014, p. 135-143.
PUB | DOI
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2685988
T. Jakobi, K. Brinkrolf, A. Tauch, T. Noll, J. Stoye, A. Pühler, and A. Goesmann, “Discovery of transcription start sites in the Chinese hamster genome by next-generation RNA sequencing”, Journal of Biotechnology, 2014, 190, 64-75.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Bielefelder E-Dissertation | PUB-ID: 2677466
N. Hoffmann, Computational methods for high-throughput metabolomics, Universität Bielefeld, Bielefeld, 2014.
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2014 | Lexikoneintrag | Veröffentlicht | PUB-ID: 2693552
J. Stoye, in Encyclopedia of Algorithms (Ed.: M.-Y. Kao), Springer Verlag, 2014.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2691246
E. Fueller, D. Schaefer, U. Fischer, P. Krell, M. Stanulla, A. Borkhardt, and R. K. Slany, “Genomic Inverse PCR for Exploration of Ligated Breakpoints (GIPFEL), a New Method to Detect Translocations in Leukemia”, PloS one, 2014, 9, 104419.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2643941
N. Hoffmann, M. Wilhelm, A. Doebbe, K. Niehaus, and J. Stoye, “BiPACE 2D – Graph-based multiple alignment for comprehensive two-dimensional gas chromatography–mass spectrometry”, Bioinformatics, 2014, 30, 988-995.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2693409
E. Fredrich, C. Ander, J. Stoye, I. Brune, and A. Tauch, “Metatranskriptomik der Mikrobiota aus der menschlichen Achselhöhle”, BIOspektrum, 2014, 20, 294-296.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2691732
B. Klippel, K. Sahm, A. Basner, S. Wiebusch, P. John, U. Lorenz, A. Peters, F. Abe, K. Takahashi, O. Kaiser, et al., “Carbohydrate-active enzymes identified by metagenomic analysis of deep-sea sediment bacteria”, Extremophiles, 2014, 18, 853-863.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2691279
V. Binder, C. Bartenhagen, V. Okpanyi, M. Gombert, B. Moehlendick, B. Behrens, H. - U. Klein, H. Rieder, P. Krell, M. Dugas, et al., “A New Workflow for Whole-Genome Sequencing of Single Human Cells”, Human mutation, 2014.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Bielefelder E-Dissertation | PUB-ID: 2673418
M. Mascher, POPSEQ Anchoring and ordering contig assemblies from next generation sequencing data by population sequencing, Universität Bielefeld, Bielefeld, 2014.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2665333
B. Henrich, M. Rumming, A. Sczyrba, E. Velleuer, R. Dietrich, W. Gerlach, M. Gombert, S. Rahn, J. Stoye, A. Borkhardt, et al., “Mycoplasma salivarium as a Dominant Coloniser of Fanconi Anaemia Associated Oral Carcinoma”, PLoS ONE, 2014, 9, e92297.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2611641
M. Dias Vieira Braga, and J. Stoye, in Advances in Bioinformatics and Computational Biology. BSB 2013 (Eds.: J.C. Setubal, N.F. Almeida), Springer Verlag, Cham, 2013, p. 36-46.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2611630
E. Willing, S. Zaccaria, M. Dias Vieira Braga, and J. Stoye, “On the Inversion-Indel Distance”, BMC Bioinformatics, 2013, 14, : S3.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2013 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2611648
M. Dias Vieira Braga, C. Chauve, D. Dörr, K. Jahn, J. Stoye, A. Thévenin, and R. Wittler, in Models and Algorithms for Genome Evolution (Eds.: C. Chauve, N. El-Mabrouk, E. Tannier), Springer Verlag, 2013, p. 287-307.
PUB | DOI
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2575011
C. Ander, O. B. Schulz-Trieglaff, J. Stoye, and A. J. Cox, “metaBEETL: high-throughput analysis of heterogeneous microbial populations from shotgun DNA sequences”, BMC Bioinformatics, 2013, 14, S2.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2555342
P. He, K. Hao, J. Blom, C. Rückert, J. Vater, Z. Mao, Y. Wu, M. Hou, P. He, Y. He, et al., “Genome sequence of the plant growth promoting strain Bacillus amyloliquefaciens subsp. plantarum B9601-Y2 and expression of mersacidin and other secondary metabolites”, Journal of biotechnology, 2013, 164, 281-291.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2641228
S. Jünemann, F. J. Sedlazeck, K. Prior, A. Albersmeier, U. John, J. Kalinowski, A. Mellmann, A. Goesmann, A. von Haeseler, J. Stoye, et al., “Corrigendum: Updating benchtop sequencing performance comparison”, Nature biotechnology, 2013, 31, 1148.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2492825
S. Reuther, H. Schmetzer, F. R. Schuster, P. Krell, C. Grabrucker, A. Liepert, T. Kroell, H. - J. Kolb, A. Borkhardt, and R. Buhmann, “In vitro-induced response patterns of antileukemic T cells: characterization by spectratyping and immunophenotyping”, Clinical and Experimental Medicine, 2013, 13, 29-48.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2611643
A. Bergeron, and J. Stoye, in Models and Algorithms for Genome Evolution (Eds.: C. Chauve, N. El-Mabrouk, E. Tannier), Springer Verlag, 2013, p. 63-81.
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2013 | Bielefelder E-Dissertation | PUB-ID: 2604883
J. Blom, Comparative genomics on gene and single nucleotide level, Universitätsbibliothek, Bielefeld, 2013.
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2013 | Bielefelder E-Dissertation | PUB-ID: 2594322
S. J. Janowski, VANESA - A bioinformatics software application for the modeling, visualization, analysis, and simulation of biological networks in systems biology applications, Bielefeld University, Bielefeld, 2013.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2575361
P. Krell, S. Reuther, U. Fischer, T. Keller, S. Weber, M. Gombert, F. R. Schuster, C. Asang, P. Stepensky, B. Strahm, et al., “Next-generation-sequencing-spectratyping reveals public T-cell receptor repertoires in pediatric very severe aplastic anemia and identifies a beta chain CDR3 sequence associated with hepatitis-induced pathogenesis”, Haematologica, 2013, 98, 1388-1396.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Lexikoneintrag | Veröffentlicht | PUB-ID: 2577323
W. Gerlach, and J. Stoye, in Encyclopedia of Metagenomics (Ed.: K.E. Nelson), Springer Verlag, 2013.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2566922
S. Jünemann, F. J. Sedlazeck, K. Prior, A. Albersmeier, U. John, J. Kalinowski, A. Mellmann, A. Goesmann, A. von Haeseler, J. Stoye, et al., “Updating benchtop sequencing performance comparison”, Nature Biotechnology, 2013, 31, 294-296.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2625914
T. Bergmann, U. Maeder, M. Fiebich, M. Dickob, T. W. Nattkemper, and D. Anselmetti, “Categorization of two-photon microscopy images of human cartilage into states of osteoarthritis”, Osteoarthritis And Cartilage, 2013, 21, 1074-1082.
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2013 | Konferenzband | Veröffentlicht | PUB-ID: 2616537
“Algorithms in Bioinformatics”, Lecture Notes in Bioinformatics, 2013, 8126.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2611633
K. Jahn, S. Winter, J. Stoye, and S. Böcker, “Statistics for approximate gene clusters”, BMC Bioinformatics, 2013, 14, S14.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548236
P. Schwientek, S. Wendler, A. Neshat, C. Eirich, C. Rückert, A. Klein, U. F. Wehmeier, J. Kalinowski, J. Stoye, and A. Pühler, “Comparative RNA-sequencing of the acarbose producer Actinoplanes sp. SE50/110 cultivated in different growth media”, Journal of Biotechnology, 2013, 167, 166-177.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548286
V. M. Luque-Almagro, F. Acera, M. I. Igeño, D. Wibberg, M. D. Roldán, L. P. Sáez, M. Hennig, A. Quesada, M. J. Huertas, J. Blom, et al., “Draft whole genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344”, Environmental Microbiology, 2013, 15, 253-270.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2552092
R. Wittler, “Unraveling overlapping deletions by agglomerative clustering”, BMC Genomics, 2013, 14, S12.
PUB | Dateien verfügbar | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529309
S. Bolzan de Campos, J. - W. Youn, R. Farina, S. Jaenicke, S. Jünemann, R. Szczepanowski, A. Beneduzi, L. K. Vargas, V. F. Wendisch, and L. Passaglia, “Changes in Root Bacterial Communities Associated to Two Different Development Stages of Canola (*Brassica napus* L. var oleifera) Evaluated through Next-Generation Sequencing”, Microbial Ecology, 2013, 65, 593-601.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2659331
P. Feijão, and J. Meidanis, “Extending the Algebraic Formalism for Genome Rearrangements to Include Linear Chromosomes”, IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2013, 10, 819-831.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529202
M. Zakrzewski, T. Bekel, C. Ander, A. Pühler, O. Rupp, J. Stoye, A. Schlüter, and A. Goesmann, “MetaSAMS - A novel software platform for taxonomic classification, functional annotation and comparative analysis of metagenome datasets”, Journal of Biotechnology, 2013, 167, 156-165.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2560353
D. Dörr, I. Gronau, S. Moran, and I. Yavneh, “Stochastic errors vs. modeling errors in distance based phylogenetic reconstructions”, Algorithms for Molecular Biology, 2012, 7, 22.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2512642
D. Dörr, A. Thévenin, and J. Stoye, “Gene family assignment-free comparative genomics”, BMC Bioinformatics, 2012, 13, S3.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2498160
J. Schröder, I. Maus, K. Meyer, S. Wördemann, J. Blom, S. Jaenicke, J. Schneider, E. Trost, and A. Tauch, “Complete genome sequence, lifestyle, and multi-drug resistance of the human pathogen Corynebacterium resistens DSM 45100 isolated from blood samples of a leukemia patient”, BMC Genomics, 2012, 13, : 141.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2517239
N. Hoffmann, M. Keck, H. Neuweger, M. Wilhelm, P. Högy, K. Niehaus, and J. Stoye, “Combining peak- and chromatogram-based retention time alignment algorithms for multiple chromatography-mass spectrometry datasets”, BMC Bioinformatics, 2012, 13, 21.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2512644
K. Jahn, H. Sudek, and J. Stoye, “Multiple genome comparison based on overlap regions of pairwise local alignments”, BMC Bioinformatics, 2012, 13, S7.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2513347
E. Trost, J. Blom, S. de Castro Soares, I. - H. Huang, A. Al-Dilaimi, J. Schröder, S. Jaenicke, F. A. Dorella, F. S. Rocha, A. Miyoshi, et al., “Pangenomic Study of Corynebacterium diphtheriae That Provides Insights into the Genomic Diversity of Pathogenic Isolates from Cases of Classical Diphtheria, Endocarditis, and Pneumonia”, Journal of bacteriology, 2012, 194, 3199-3215.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2490949
A. Zschuttig, K. Zimmermann, J. Blom, A. Goesmann, C. Pohlmann, and F. Gunzer, “Identification and Characterization of Microcin S, a New Antibacterial Peptide Produced by Probiotic Escherichia coli G3/10”, PLoS ONE, 2012, 7, e33351.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2709879
D. Doerr, K. Hu, S. Renly, S. Edlund, and M. Davis, “Accelerating investigation of food-borne disease outbreaks using pro-active geospatial modeling of food supply chains”, HealthGIS '12: Proceedings of the First ACM SIGSPATIAL International Workshop on Use of GIS in Public Health, 2012, 44-47.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2527519
J. M. Ruijter, M. W. Pfaffl, S. Zhao, A. N. Spiess, G. Boggy, J. Blom, R. G. Rutledge, D. Sisti, A. Lievens, K. De Preter, et al., “Evaluation of qPCR curve analysis methods for reliable biomarker discovery: Bias, resolution, precision, and implications”, Methods. A companion to methods in enzymology (San Diego, Calif.), 2012, 59, 32-46.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2553484
T. Marschall, I. Herms, H. - M. Kaltenbach, and S. Rahmann, “Probabilistic Arithmetic Automata and Their Applications”, Ieee/Acm Transactions On Computational Biology And Bioinformatics, 2012, 9, 1737-1750.
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2012 | Bielefelder E-Dissertation | PUB-ID: 2468026
W. Gerlach, Taxonomic classification of metagenomic sequences, Universität, Bielefeld, 2012.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2553300
J. Manuch, M. Patterson, R. Wittler, C. Chauve, and E. Tannier, “Linearization of ancestral multichromosomal genomes”, BMC Bioinformatics, 2012, 13.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2659289
F. C. Canavez, D. D. Luche, P. Stothard, K. R. M. Leite, J. M. Sousa-Canavez, G. Plastow, J. Meidanis, M. A. Souza, P. Feijão, S. S. Moore, et al., “Genome Sequence and Assembly of Bos indicus”, Journal of Heredity, 2012, 103, 342-348.
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2012 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2659385
C. Mira, P. Feijão, M. A. Souza, A. Moura, J. Meidanis, G. Lima, R. Schmitz, R. P. Bossolan, and I. T. Freitas, in 2012 IEEE 15th International Conference on Computational Science and Engineering, 2012, p. 36-41.
PUB | DOI | WoS
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2553455
P. De Maayer, W. - Y. Chan, J. Blom, S. N. Venter, B. Duffy, T. H. M. Smits, and T. A. Coutinho, “The large universal Pantoea plasmid LPP-1 plays a major role in biological and ecological diversification”, Bmc Genomics, 2012, 13, 625.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2486060
P. Schwientek, R. Szczepanowski, C. Rückert, J. Kalinowski, A. Klein, K. Selber, U. F. Wehmeier, J. Stoye, and A. Pühler, “The complete genome sequence of the acarbose producer Actinoplanes sp. SE50/110”, BMC Genomics, 2012, 13, : 112.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2659280
P. Biller, P. Feijão, and J. Meidanis, “Rearrangement-Based Phylogeny Using the Single-Cut-or-Join Operation.”, IEEE/ACM transactions on computational biology and bioinformatics, 2012, 10, 122-134.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Konferenzband | Veröffentlicht | PUB-ID: 2510416
“Combinatorial Pattern Matching”, Lecture Notes in Computer Science, 2012, 7354.
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2012 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2468382
N. Hoffmann, and J. Stoye, in Metabolomics (Ed.: U. Roessner), Intech, 2012, p. 73-98.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2510984
R. Hilker, C. Sickinger, C. N. S. Pedersen, and J. Stoye, “UniMoG - A unifying framework for genomic distance calculation and sorting based on DCJ”, Bioinformatics, 2012, 28, 2509-2511.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2542210
V. R. Parreira, M. Costa, F. G. Eikmeyer, J. Blom, and J. F. Prescott, “Sequence of Two Plasmids from Clostridium perfringens Chicken Necrotic Enteritis Isolates and Comparison with C. perfringens Conjugative Plasmids”, PLoS ONE, 2012, 7, e49753.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Bielefelder E-Dissertation | PUB-ID: 2533144
M. Zakrzewski, Development of computational methods for the analysis of metagenome and metatranscriptome data, Universität Bielefeld, Bielefeld, 2012.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2493233
P. Burcsi, F. Cicalese, G. Fici, and Z. Lipták, “ALGORITHMS FOR JUMBLED PATTERN MATCHING IN STRINGS”, International Journal of Foundations of Computer Science, 2012, 23, 357-374.
PUB | DOI | WoS | arXiv
 
2012 | Bielefelder E-Dissertation | PUB-ID: 2484427
P. Schwientek, Genomics and transcriptomics of the industrial acarbose producer Actinoplanes sp. SE50/110, Universität Bielefeld, Bielefeld, 2012.
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2012 | Bielefelder E-Dissertation | PUB-ID: 2517237
A. Bunkowski, MCC-IMS data analysis using automated spectra processing and explorative visualisation methods, Bielefeld University, Bielefeld, 2012.
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