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415 Publikationen

2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2512642 OA
D. Dörr, A. Thévenin, and J. Stoye, “Gene family assignment-free comparative genomics”, BMC Bioinformatics, vol. 13, 2012, pp. S3.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2498160 OA
J. Schröder, et al., “Complete genome sequence, lifestyle, and multi-drug resistance of the human pathogen Corynebacterium resistens DSM 45100 isolated from blood samples of a leukemia patient”, BMC Genomics, vol. 13, 2012, : 141.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2517239 OA
N. Hoffmann, et al., “Combining peak- and chromatogram-based retention time alignment algorithms for multiple chromatography-mass spectrometry datasets”, BMC Bioinformatics, vol. 13, 2012, pp. 21.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2512644 OA
K. Jahn, H. Sudek, and J. Stoye, “Multiple genome comparison based on overlap regions of pairwise local alignments”, BMC Bioinformatics, vol. 13, 2012, pp. S7.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2513347
E. Trost, et al., “Pangenomic Study of Corynebacterium diphtheriae That Provides Insights into the Genomic Diversity of Pathogenic Isolates from Cases of Classical Diphtheria, Endocarditis, and Pneumonia”, Journal of bacteriology, vol. 194, 2012, pp. 3199-3215.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2490949
A. Zschuttig, et al., “Identification and Characterization of Microcin S, a New Antibacterial Peptide Produced by Probiotic Escherichia coli G3/10”, PLoS ONE, vol. 7, 2012, pp. e33351.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2709879
D. Doerr, et al., “Accelerating investigation of food-borne disease outbreaks using pro-active geospatial modeling of food supply chains”, HealthGIS '12: Proceedings of the First ACM SIGSPATIAL International Workshop on Use of GIS in Public Health, 2012, pp. 44-47.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2527519
J.M. Ruijter, et al., “Evaluation of qPCR curve analysis methods for reliable biomarker discovery: Bias, resolution, precision, and implications”, Methods. A companion to methods in enzymology (San Diego, Calif.), vol. 59, 2012, pp. 32-46.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2553484
T. Marschall, et al., “Probabilistic Arithmetic Automata and Their Applications”, Ieee/Acm Transactions On Computational Biology And Bioinformatics, vol. 9, 2012, pp. 1737-1750.
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2012 | Bielefelder E-Dissertation | PUB-ID: 2468026 OA
W. Gerlach, Taxonomic classification of metagenomic sequences, Bielefeld: Universität, 2012.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2553300
J. Manuch, et al., “Linearization of ancestral multichromosomal genomes”, BMC Bioinformatics, vol. 13, 2012.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2659289
F.C. Canavez, et al., “Genome Sequence and Assembly of Bos indicus”, Journal of Heredity, vol. 103, 2012, pp. 342-348.
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2012 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2659385
C. Mira, et al., “A GRASP-based Heuristic for the Project Portfolio Selection Problem”, 2012 IEEE 15th International Conference on Computational Science and Engineering, 2012, pp.36-41.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2553455
P. De Maayer, et al., “The large universal Pantoea plasmid LPP-1 plays a major role in biological and ecological diversification”, Bmc Genomics, vol. 13, 2012, pp. 625.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2486060 OA
P. Schwientek, et al., “The complete genome sequence of the acarbose producer Actinoplanes sp. SE50/110”, BMC Genomics, vol. 13, 2012, : 112.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2659280
P. Biller, P. Feijão, and J. Meidanis, “Rearrangement-Based Phylogeny Using the Single-Cut-or-Join Operation.”, IEEE/ACM transactions on computational biology and bioinformatics, vol. 10, 2012, pp. 122-134.
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2012 | Konferenzband | Veröffentlicht | PUB-ID: 2510416
J. Kärkkäinen and J. Stoye, eds., “Combinatorial Pattern Matching”, Lecture Notes in Computer Science, vol. 7354, 2012.
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2012 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2468382 OA
N. Hoffmann and J. Stoye, “Generic Software Frameworks for GC-MS Based Metabolomics”, Metabolomics, U. Roessner, ed., InTech, 2012, pp.73-98.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2510984
R. Hilker, et al., “UniMoG - A unifying framework for genomic distance calculation and sorting based on DCJ”, Bioinformatics, vol. 28, 2012, pp. 2509-2511.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2542210
V.R. Parreira, et al., “Sequence of Two Plasmids from Clostridium perfringens Chicken Necrotic Enteritis Isolates and Comparison with C. perfringens Conjugative Plasmids”, PLoS ONE, vol. 7, 2012, pp. e49753.
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2012 | Bielefelder E-Dissertation | PUB-ID: 2533144 OA
M. Zakrzewski, Development of computational methods for the analysis of metagenome and metatranscriptome data, Bielefeld: Universität Bielefeld, 2012.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2493233
P. Burcsi, et al., “ALGORITHMS FOR JUMBLED PATTERN MATCHING IN STRINGS”, International Journal of Foundations of Computer Science, vol. 23, 2012, pp. 357-374.
PUB | DOI | WoS | arXiv
 
2012 | Bielefelder E-Dissertation | PUB-ID: 2484427 OA
P. Schwientek, Genomics and transcriptomics of the industrial acarbose producer Actinoplanes sp. SE50/110, Bielefeld: Universität Bielefeld, 2012.
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2012 | Bielefelder E-Dissertation | PUB-ID: 2517237 OA
A. Bunkowski, MCC-IMS data analysis using automated spectra processing and explorative visualisation methods, Bielefeld: Bielefeld University, 2012.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526281
M. Zischka, et al., “Complete Genome Sequence of the Porcine Isolate Enterococcus faecalis D32”, Journal of Bacteriology, vol. 194, 2012, pp. 5490-5491.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526298
I. Maus, et al., “Complete Genome Sequence of the Hydrogenotrophic, Methanogenic Archaeon Methanoculleus bourgensis Strain MS2T, Isolated from a Sewage Sludge Digester”, Journal of Bacteriology, vol. 194, 2012, pp. 5487-5488.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2526933
A.B. Dohrmann, et al., “Importance of rare taxa for bacterial diversity in the rhizosphere of Bt- and conventional maize varieties”, The ISME journal, vol. 7, 2012, pp. 37-49.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2517230
S. Jünemann, et al., “Bacterial Community Shift in Treated Periodontitis Patients Revealed by Ion Torrent 16S rRNA Gene Amplicon Sequencing”, PLoS ONE, vol. 7, 2012, pp. e41606.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2501312
K. Gorzolka, et al., “Metabolite fingerprinting of barley whole seeds, endosperms, and embryos during industrial malting”, Journal of Biotechnology, vol. 159, 2012, pp. 177-187.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2490286
U. Vogel, et al., “Ion Torrent PGM sequencing for genomic typing of Neisseria meningitidis for rapid determination of multiple layers of typing information”, Journal of clinical microbiology, vol. 50, 2012, pp. 1889-1894.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1897974
P.L. Erdős, L. Soukup, and J. Stoye, “Balanced Vertices in Trees and a Simpler Algorithm to Compute the Genomic Distance”, Applied Mathematics Letters, vol. 24, 2011, pp. 82-86.
PUB | DOI | WoS | arXiv
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2396558 OA
M. Dias Vieira Braga, et al., “On the weight of indels in genomic distances”, BMC Bioinformatics, vol. 12, 2011, : S13.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2396509 OA
M. Dias Vieira Braga, et al., “Genomic distance under gene substitutions”, BMC Bioinformatics, vol. 12, 2011, : S8.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2091794
M. Dias Vieira Braga, E. Willing, and J. Stoye, “Double Cut and Join with Insertions and Deletions”, Journal of Computational Biology, vol. 18, 2011, pp. 1167-1184.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2091790
J. Kovac, et al., “Restricted DCJ Model. Rearrangement Problems with Chromosome Reincorporation”, Journal of Computational Biology, vol. 18, 2011, pp. 1231-1241.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2354746
P. Schwientek, et al., “Sequencing of high G + C microbial genomes using the ultrafast pyrosequencing technology”, Journal of Biotechnology, vol. 155, 2011, pp. 68-77.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2375634
J.F. Pothier, et al., “The ubiquitous plasmid pXap41 in the invasive phytopathogen Xanthomonas arboricola pv. pruni: complete sequence and comparative genomic analysis”, FEMS Microbiology Letters, vol. 323, 2011, pp. 52-60.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2404767
B. Niu, et al., “The Genome of the Plant Growth-Promoting Rhizobacterium Paenibacillus polymyxa M-1 Contains Nine Sites Dedicated to Nonribosomal Synthesis of Lipopeptides and Polyketides.”, Journal of Bacteriology, vol. 193, 2011, pp. 5862-5863.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2354731
D. Wibberg, et al., “Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid”, Journal of Biotechnology, vol. 155, 2011, pp. 50-62.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2659339
P. Feijão and J. Meidanis, “SCJ: A Breakpoint-Like Distance that Simplifies Several Rearrangement Problems”, IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol. 8, 2011, pp. 1318-1329.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326511
C. Rückert, et al., “Genome sequence of B. amyloliquefaciens type strain DSM7(T) reveals differences to plant-associated B. amyloliquefaciens FZB42”, Journal of Biotechnology, vol. 155, 2011, pp. 78-85.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2373808
J. Herold, C. Loyek, and T.W. Nattkemper, “Multivariate Image Mining”, Wiley Interdisciplinary Reviews: DATA MINING AND KNOWLEDGE DISCOVERY, vol. 1, 2011, pp. 2-13.
PUB | DOI | WoS
 
2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2659373
C. Mira, et al., “The SinBiota 2.0 Biodiversity Information System”, 2011 IEEE Seventh International Conference on eScience, 2011, pp.142-149.
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2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2401639
G. Fici and Z. Lipták, “On prefix normal words”, Development in Language Theory. 15th International Conference (DLT 2011). Proceedings, G. Mauri and A. Leporati, eds., Lecture Notes in Computer Science, vol. 6795, Berlin ; Heidelberg: Springer, 2011, pp.228-238.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2401665
S. Hazelhurst and Z. Lipták, “KABOOM! A new suffix-array based algorithm for clustering expression data”, Bioinformatics, vol. 27, 2011, pp. 3348-3355.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2375954
R. Borriss, et al., “Relationship of Bacillus amyloliquefaciens clades associated with strains DSM 7T and FZB42T: a proposal for Bacillus amyloliquefaciens subsp. amyloliquefaciens subsp. nov. and Bacillus amyloliquefaciens subsp. plantarum subsp. nov. based on complete genome sequence comparisons”, Int J Syst Evol Microbiol, vol. 61, 2011, pp. 1786-1801.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2472468
P. Llop, et al., “Erwinia amylovora novel plasmid pEI70: Complete sequence, biogeography, and role in aggressiveness in the fire blight phytopathogen”, PLoS one, vol. 6, 2011, pp. e28651.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2423955
F. Cicalese, P.L.P. Erdős, and Z. Lipták, “Efficient Reconstruction of RC-Equivalent Strings”, Proc. WOCA, vol. 6460, 2011, pp.349-362.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326445
J. Schneider, et al., “RAPYD - Rapid Annotation Platform for Yeast Data”, Journal of Biotechnology, vol. 155, 2011, pp. 118-126.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2307104
T.H.M. Smits, et al., “Metabolic Versatility and Antibacterial Metabolite Biosynthesis Are Distinguishing Genomic Features of the Fire Blight Antagonist Pantoea vagans C9-1”, PLoS ONE, vol. 6, 2011, pp. e22247.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2448409
F. Imperi, et al., “The genomics of Acinetobacter baumannii: Insights into genome plasticity, antimicrobial resistance and pathogenicity”, IUBMB life, vol. 63, 2011, pp. 1068-1074.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326455
E. Krol, et al., “RhizoRegNet-A database of rhizobial transcription factors and regulatory networks”, Journal of Biotechnology, vol. 155, 2011, pp. 127-134.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2326518
R. Szczepanowski, et al., “Sequencing and comparative analysis of IncP-1 alpha antibiotic resistance plasmids reveal a highly conserved backbone and differences within accessory regions”, Journal of Biotechnology, vol. 155, 2011, pp. 95-103.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2329973
R. Wittler and C. Chauve, “Consistency-based detection of potential tumor-specific deletions in matched normal/tumor genomes”, BMC Bioinformatics, vol. 12, 2011, pp. S21.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2425344
F. Cicalese, P.L.P. Erdős, and Z. Lipták, “Efficient Reconstruction of RC-Equivalent Strings”, Combinatorial Algorithms : 21st International Workshop, IWOCA 2010, London, UK, July 26-28, 2010, Revised Selected Papers, Lecture Notes in Computer Science, vol. 6460, Berlin, Heidelberg: Springer, 2011, pp.349-362.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2290032
B. Joseph, et al., “Virulence Evolution of the Human Pathogen Neisseria meningitidis by Recombination in the Core and Accessory Genome”, PLoS ONE, vol. 6, 2011, pp. e18441.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093389
C. Schoen, et al., “Whole-Genome Sequence of the Transformable Neisseria meningitidis Serogroup A Strain WUE2594”, Journal of Bacteriology, vol. 193, 2011, pp. 2064-2065.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2289887
D. Hinse, et al., “Complete Genome Analysis of Streptococcus gallolyticus subsp gallolyticus, an Emerging Pathogen of Infective Endocarditis”, Clinical Chemistry and Laboratory Medicine, vol. 49, 2011, pp. S837.
PUB | WoS
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289952
J. Blom, et al., “Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming”, Bioinformatics, vol. 27, 2011, pp. 1351-1358.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Bielefelder E-Dissertation | PUB-ID: 2324501 OA
P. Husemann and A. Tauch, Bioinformatic approaches for genome finishing, Bielefeld: Universitätsbibliothek Bielefeld, 2011.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2425310
S. Wolfsheimer, et al., “Accurate statistics for local sequence alignment with position-dependent scoring by rare-event sampling”, BMC Bioinformatics, vol. 12, 2011, pp. 47-2105.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2310613
C. Chauve, et al., “Tractability results for the Consecutive-Ones Property with multiplicity”, Proceedings of CPM 2011, vol. 6661, 2011, pp.90-103.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2289928
R. Kant, et al., “Comparative genomics of Lactobacillus”, Microbial Biotechnology, vol. 4, 2011, pp. 323-332.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2492807
F.R. Schuster, et al., “Highly skewed T-cell receptor V-beta chain repertoire in the bone marrow is associated with response to immunosuppressive drug therapy in children with very severe aplastic anemia”, Blood Cancer Journal, vol. 1, 2011, pp. e8.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Im Druck | PUB-ID: 2017892
S. Schneiker-Bekel, et al., “The complete genome sequence of the dominant Sinorhizobium meliloti field isolate SM11 extends the S. meliloti pan-genome”, Journal of Biotechnology, vol. 155, In Press, pp. 20-33.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1918550
S. Heber, R. Mayr, and J. Stoye, “Common Intervals of Multiple Permutations”, Algorithmica, vol. 60, 2011, pp. 175-206.
PUB | DOI | WoS
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2087955
M. Hackl, et al., “Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering”, Journal of Biotechnology, vol. 153, 2011, pp. 62-75.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2036058
I. Margaret, et al., “Symbiotic properties and first analyses of the genomic sequence of the fast growing model strain Sinorhizobium fredii HH103 nodulating soybean”, Journal of Biotechnology, vol. 155, 2011, pp. 11-19.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2298170 OA
W. Gerlach and J. Stoye, “Taxonomic classification of metagenomic shotgun sequences with CARMA3.”, Nucleic Acids Res, vol. 39, 2011, pp. e91.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2003418
R. Powney, et al., “Genome Sequence of an Erwinia amylovora Strain with Pathogenicity Restricted to Rubus Plants”, Journal of Bacteriology, vol. 193, 2011, pp. 785-786.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2091787
R. Wittler, et al., “Consistency of Sequence-Based Gene Clusters”, Journal of Computational Biology, vol. 18, 2011, pp. 1023-1039.
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2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2093398
K. Brankatschk, et al., “Genome of a European Fresh-Vegetable Food Safety Outbreak Strain of Salmonella enterica subsp enterica Serovar Weltevreden”, Journal of Bacteriology, vol. 193, 2011, pp. 2066.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2091779
F. Hufsky, et al., “Swiftly Computing Center Strings”, BMC Bioinformatics, vol. 12, 2011, pp. 106.
PUB | DOI | WoS | PubMed | Europe PMC
 
2010 | Bielefelder E-Dissertation | PUB-ID: 2301939 OA
R. Wittler, Phylogeny-based analysis of gene clusters, Bielefeld (Germany): Bielefeld University, 2010.
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2010 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2907492
A. Bergeron, J. Mixtacki, and J. Stoye, “A New Linear Time Algorithm to Compute the Genomic Distance Via the Double Cut and Join Distance”, Structure Discovery in Biology: Motifs, Networks & Phylogenies, A. Apostolico, A. Dress, and L. Parida, eds., Dagstuhl Seminar Proceedings, vol. 10231, Dagstuhl, Germany: Schloss Dagstuhl - Leibniz-Zentrum fuer Informatik, Germany, 2010.
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2010 | Bielefelder E-Dissertation | PUB-ID: 2303705 OA
K. Jahn, Approximate common intervals based gene cluster models, Bielefeld (Germany): Bielefeld University, 2010.
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2010 | Bielefelder E-Dissertation | PUB-ID: 2301975 OA
T. Wittkop, Clustering biological data by unraveling hidden transitive substructures, Bielefeld (Germany): Bielefeld University, 2010.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2308298
A. Bunkowski, et al., “One-year time series of investigations of analytes within human breath using ion mobility spectrometry”, Int. J. Ion Mobility Spectrometry, vol. 13, 2010, pp. 141-148.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2425329
A. Bunkowski, “Software tool for coupling chromatographic total ion current dependencies of GC/MSD and MCC/IMS”, Int. J. Ion Mobil. Spectrom., vol. 13, 2010, pp. 169-175.
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2010 | Kurzbeitrag Konferenz / Poster | Veröffentlicht | PUB-ID: 2445157
A. Bergeron, J. Mixtacki, and J. Stoye, “Computing the Genomic Distance in Linear Time”, Dagstuhl Seminar Proceedings: 10231 Abstracts Collection : Structure Discovery in Biology: Motifs, Networks & Phylogenies, A. Apostolico, A. Dress, and L. Parida, eds., vol. 10231, Dagstuhl: Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2010, pp.18.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1929692
J. Schneider, et al., “CARMEN - Comparative Analysis and in silico Reconstruction of organism-specific MEtabolic Networks”, Genetics and Molecular Research, vol. 9, 2010, pp. 1660-1672.
PUB | DOI | WoS | PubMed | Europe PMC
 
2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2425332
P. Burcsi, et al., “On Table Arrangements, Scrabble Freaks, and Jumbled Pattern Matching”, Fun with Algorithms: 5th International Conference, FUN 2010, Ischia, Italy, June 2-4, 2010. Proceedings, P. Boldi, ed., Lecture Notes in Computer Science, vol. 6099, Berlin, Heidelberg: Springer, 2010, pp.89-101.
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2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2425351
K. Jahn, “Efficient Computation of Approximate Gene Clusters Based on Reference Occurrences”, Proc. RECOMB-CG, vol. 6398, 2010, pp.264-277.
PUB
 
2010 | Bielefelder E-Dissertation | PUB-ID: 2302499 OA
J.A.A. Quitzau, Biological applications for de Bruijn subgraphs and interval group testing, Bielefeld (Germany): Bielefeld University, 2010.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1893893 OA
P. Husemann and J. Stoye, “Phylogenetic Comparative Assembly”, Algorithms for Molecular Biology, vol. 5, 2010, pp. 3.
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2010 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 1918836
S. Besenbacher, B. Schwikowski, and J. Stoye, “Indexing and Searching a Mass Spectrometry Database”, Algorithms and Applications: Essays Dedicated to Esko Ukkonen on the Occasion of His 60th Birthday, T. Elomaa, H. Mannila, and P. Orponen, eds., LNCS, vol. 6060, 2010, pp.62-76.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1966439
E. Trost, et al., “The complete genome sequence of Corynebacterium pseudotuberculosis FRC41 isolated from a 12-year-old girl with necrotizing lymphadenitis reveals insights into gene-regulatory networks contributing to virulence”, BMC Genomics, vol. 11, 2010, : 728.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1785275 OA
E. Trost, et al., “Complete genome sequence and lifestyle of black-pigmented Corynebacterium aurimucosum ATCC 700975 (formerly C. nigricans CN-1) isolated from a vaginal swab of a woman with spontaneous abortion”, BMC Genomics, vol. 11, 2010, : 91.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1795670
T. Wittkop, et al., “Partitioning Biological Data with Transitivity Clustering”, Nature Methods, vol. 7, 2010, pp. 419-420.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1796445
T.H.M. Smits, et al., “Complete Genome Sequence of the Fire Blight Pathogen Erwinia amylovora CFBP 1430 and Comparison to Other Erwinia spp.”, MOLECULAR PLANT-MICROBE INTERACTIONS, vol. 23, 2010, pp. 384-393.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1898012
G. Blin, D. Faye, and J. Stoye, “Finding Nested Common Intervals Efficiently”, Journal of Computational Biology, vol. 17, 2010, pp. 1183-1194.
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2010 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 1894907
V. Mittard-Runte, et al., “Practical Guide: Genomic Techniques and How to Apply Them to Marine Questions”, Introduction to Marine Genomics (Advances in Marine Genomics), J.M. Cock, et al., eds., vol. 1, Netherlands: Springer Netherlands, 2010, pp.315-396.
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2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919217
R. Wittler and J. Stoye, “Consistency of Sequence-based Gene Clusters”, Proc. of Recomb-CG 2010, LNBI, vol. 6398, Springer Verlag, 2010, pp.252-263.
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2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1893890
P. Husemann and J. Stoye, “Repeat-aware Comparative Genome Assembly”, Proc. of GCB 2010, LNI, vol. P-173, 2010, pp.61-70.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1588556
P. Husemann and J. Stoye, “r2cat: Synteny Plots and Comparative Assembly”, Bioinformatics, vol. 26, 2010, pp. 570-571.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1897997
A. Bergeron, P. Medvedev, and J. Stoye, “Rearrangement Models and Single-Cut Operations”, Journal of Computational Biology, vol. 17, 2010, pp. 1213-1225.
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2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919211
F. Hufsky, et al., “Swiftly Computing Center Strings”, Proc. of WABI 2010, LNBI, vol. 6293, 2010, pp.325-336.
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2010 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 1919216
J. Kovac, M. Dias Vieira Braga, and J. Stoye, “The Problem of Chromosome Reincorporation in DCJ Sorting and Halving”, Proc. of Recomb-CG 2010, LNBI, vol. 6398, 2010, pp.13-24.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1794419
J. Herold, et al., “Integrating semantic annotation and information visualization for the analysis of multichannel fluorescence micrographs from pancreatic tissue”, Computerized Medical Imaging and Graphics, vol. 34, 2010, pp. 446-452.
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2010 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 1898025
M. Dias Vieira Braga and J. Stoye, “The Solution Space of Sorting by DCJ”, Journal of Computational Biology, vol. 17, 2010, pp. 1145-1165.
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