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414 Publikationen

2019 | Zeitschriftenaufsatz | Im Druck | PUB-ID: 2937712
D. Rubert, et al., “Analysis of local genome rearrangement improves resolution of ancestral genomic maps in plants”, BMC Genomics, In Press.
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2019 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2937148
J. Alanko, et al., “Finding All Maximal Perfect Haplotype Blocks in Linear Time”, Proceedings of WABI 2019, Leibniz International Proceedings in Informatics. LIPIcs, vol. 143, Dagstuhl: Schloss Dagstuhl, Leibniz-Zentrum für Informatik , 2019, pp.8:1-8:9.
PUB | DOI
 
2019 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2936900
R. Wittler, “Alignment- and reference-free phylogenomics with colored de Bruijn graphs”, Proceedings of WABI 2019, K. Huber and D. Gusfield, eds., LIPIcs, vol. 143, Dagstuhl, Germany: Schloss Dagstuhl--Leibniz-Zentrum fuer Informatik, 2019.
PUB | DOI | Download (ext.)
 
2019 | Datenpublikation | PUB-ID: 2936848
D. Dörr and D. Rubert, Supplementary Data for "Analysis of local genome rearrangement improves resolution of ancestral genomic maps in plants", Bielefeld University, 2019.
PUB | Dateien verfügbar | DOI
 
2019 | Herausgeber*in Sammelwerk | Veröffentlicht | PUB-ID: 2935998
J.C. Setubal, J. Stoye, and B.E. Dutilh, eds., Computational Methods for Microbiome Analysis, Frontiers Research Topics, Lausanne: Frontiers Media, 2019.
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2019 | Preprint | PUB-ID: 2935604
R. Wittler, “Alignment- and reference-free phylogenomics with colored de-Bruijn graphs”, arXiv:1905.04165, 2019.
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2019 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2932883
D. Dörr and J. Stoye, “A Perspective on Comparative and Functional Genomics”, Bioinformatics and Phylogenetics, T. Warnow, ed., Computational Biology, vol. 29, Cham: Springer , 2019, pp.361-372.
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933161
H. Hassan and S. Shanak, “GOTrapper. A tool to navigate through branches of gene ontology hierarchy”, BMC Bioinformatics, vol. 20, 2019, : 20.
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932884
H. Oey, et al., “Whole-genome sequence of the bovine blood fluke Schistosoma bovis supports interspecific hybridization with S. haematobium”, PLOS Pathogens, vol. 15, 2019, : e1007513.
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919005
T. Schulz, J. Stoye, and D. Dörr, “GraphTeams. A method for discovering spatial gene clusters in Hi-C sequencing data”, BMC Genomics, vol. 19, 2018, : 308.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919006
D. Rubert, et al., “Computing the family-free DCJ similarity”, BMC Bioinformatics, vol. 19, 2018, : 152.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918481
N. Luhmann, et al., “Scaffolding of Ancient Contigs and Ancestral Reconstruction in a Phylogenetic Framework”, IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol. 15, 2018, pp. 2094-2100.
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932754
S. Bhatia, P. Feijão, and A.R. Francis, “Position and Content Paradigms in Genome Rearrangements. The Wild and Crazy World of Permutations in Genomics”, BULLETIN OF MATHEMATICAL BIOLOGY, vol. 80, 2018, pp. 3227-3246.
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919346
D. Hagenfeld, et al., “Do we treat our patients or rather periodontal microbes with adjunctive antibiotics in periodontal therapy? A 16S rDNA microbial community analysis”, PLOS ONE, vol. 13, 2018, : e0195534.
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Bielefelder E-Dissertation | PUB-ID: 2919356
E. Willing, On Distance and Sorting of the Double Cut-and-Join and the Inversion-*indel* Model, Bielefeld: Universität Bielefeld, 2018.
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2018 | Bielefelder E-Dissertation | PUB-ID: 2918485
G. Holley, Pan-genome Search and Storage, Bielefeld: Universität Bielefeld, 2018.
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2018 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2930445
L. Cunha, et al., “Identifying Maximal Perfect Haplotype Blocks”, Proceedings of BSB 2018, LNBI, vol. 11228, Springer Verlag, 2018, pp.26-37.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930268
G. Holley, et al., “Dynamic Alignment-Free and Reference-Free Read Compression”, JOURNAL OF COMPUTATIONAL BIOLOGY, vol. 25, 2018, pp. 825-836.
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2913921
T. Zekic, G. Holley, and J. Stoye, “Pan-genome Storage and Analysis Techniques”, Comparative Genomics. Methods and Protocols, J.C. Setubal, P. Stadler, and J. Stoye, eds., Methods in Molecular Biology, vol. 1704, New York: Springer Verlag, 2018, pp.29-53.
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2018 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2913922
D. Dörr, P. Feijão, and J. Stoye, “Family-Free Genome Comparison”, Comparative Genomics: Methods and Protocols, J.C. Setubal, P. Stadler, and J. Stoye, eds., Methods in Molecular Biology, vol. 1704, New York: Springer Verlag, 2018, pp.331-342.
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2018 | Herausgeber*in Sammelwerk | Veröffentlicht | PUB-ID: 2913920
J.C. Setubal, P. Stadler, and J. Stoye, eds., Comparative Genomics: Methods and Protocols, Methods in Molecular Biology, vol. 1704, New York: Springer Verlag, 2018.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919012
S. Jaenicke, et al., “Flexible metagenome analysis using the MGX framework”, Microbiome, vol. 6, 2018, : 76.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2908574
N. Luhmann, et al., “The SCJ Small Parsimony Problem for Weighted Gene Adjacencies”, IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol. 14, 2017.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2912492
N. Luhmann, D. Dörr, and C. Chauve, “Comparative scaffolding and gap filling of ancient bacterial genomes applied to two ancient Yersinia pestis genomes”, Microbial Genomics, vol. 3, 2017.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913556
S. Jünemann, et al., “Bioinformatics for NGS-based metagenomics and the application to biogas research”, Journal of Biotechnology, vol. 261, 2017, pp. 10-23.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2913015
D. Rubert, et al., “Algorithms for Computing the Family-Free Genomic Similarity under DCJ”, Comparative Genomics. RECOMB-CG 2017, J. Meidanis and L. Nakhleh, eds., Lecture Notes in Bioinformatics, vol. 10562, Cham: Springer Verlag, 2017, pp.76-100.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909057
D. Rubert, et al., “Approximating the DCJ distance of balanced genomes in linear time”, Algorithms for Molecular Biology, vol. 12, 2017, : 3.
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2017 | Bielefelder E-Dissertation | PUB-ID: 2909213
N. Luhmann, Phylogenetic assembly of paleogenomes integrating ancient DNA data, Bielefeld: Universität Bielefeld, 2017.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916552
P.H. da Silva, et al., “Genomic Distance with High Indel Costs”, IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol. 14, 2017, pp. 728-732.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2909409
L. Cunha, et al., “Fast and Simple Jumbled Indexing for Binary Run-Length Encoded Strings”, Proceedings of CPM 2017, LIPIcs, vol. 78, 2017, pp.19:1-19:9.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911814
D. Dörr, et al., “The gene family-free median of three”, Algorithms for Molecular Biology, vol. 12, 2017, : 14.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Preprint | Veröffentlicht | PUB-ID: 2908521
L. Cunha, et al., “Faster Jumbled Indexing for Binary Run-Length Encoded Strings”, arXiv: 1702.01280, 2017.
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2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2907587
G. Holley, et al., “Dynamic Alignment-Free and Reference-Free Read Compression”, Proceedings of RECOMB 2017, Lecture Notes in Bioinformatics, vol. 10229, 2017, pp.50-65.
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2017 | Sammelwerksbeitrag | Im Druck | PUB-ID: 2913924
Y. Anselmetti, et al., “Comparative Methods for Reconstructing Ancient Genome Organization”, Comparative Genomics, J.C. Setubal, P. Stadler, and J. Stoye, eds., Methods in Molecular Biology, Springer Verlag, In Press.
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2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2913016
T. Schulz, J. Stoye, and D. Dörr, “Finding Teams in Graphs and its Application to Spatial Gene Cluster Discovery”, Proceedings of RECOMB-CG 2017, Lecture Notes in Bioinformatics, vol. 1704, Berlin: Springer Verlag, 2017, pp.197-212.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909967
D. Dörr, et al., “New Genome Similarity Measures based on Conserved Gene Adjacencies”, Journal of Computational Biology, vol. 24, 2017, pp. 616-634.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901477
S.E. Ahmed Raza, et al., “Robust normalization protocols for multiplexed fluorescence bioimage analysis”, BioData Mining, vol. 9, 2016, : 11.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905930
S. Winter, et al., “Finding approximate gene clusters with GECKO 3”, Nucleic Acids Research, vol. 44, 2016, pp. 9600-9610.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2903708
D. Rubert, et al., “A Linear Time Approximation Algorithm for the DCJ Distance for Genomes with Bounded Number of Duplicates”, Algorithms in Bioinformatics. WABI 2016, M. Frith and C.N. Storm Pedersen, eds., Lecture Notes in Bioinformatics, vol. 9838, Cham: Springer, 2016, pp.293-306.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900129
G. Holley, R. Wittler, and J. Stoye, “Bloom Filter Trie: an alignment-free and reference-free data structure for pan-genome storage”, Algorithms for Molecular Biology, vol. 11, 2016, : 3.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2016 | Bielefelder E-Dissertation | PUB-ID: 2906743
A. Bremges, Assembling the microbial dark matter, Bielefeld: Universität Bielefeld, 2016.
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2016 | Bielefelder E-Dissertation | PUB-ID: 2902049
D. Dörr, Gene family-free genome comparison, Bielefeld: Universität Bielefeld, 2016.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900943
D. Langenkämper, et al., “Comparison of Acceleration Techniques for Selected Low-Level Bioinformatics Operations”, Frontiers in Genetics, vol. 7, 2016, : 5.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2900111
L.A.B. Kowada, et al., “New Genome Similarity Measures based on Conserved Gene Adjacencies”, Research in Computational Molecular Biology. RECOMB 2016, M. Singh, ed., Lecture Notes in Bioinformatics (LNBI), vol. 9649, Springer, 2016, pp.204-224.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900421
L. Krause, et al., “Identification of the CIMP-like subtype and aberrant methylation of members of the chromosomal segregation and spindle assembly pathways in esophageal adenocarcinoma”, Carcinogenesis, vol. 37, 2016, pp. 356-365.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2901740
N. Luhmann, et al., “The SCJ small parsimony problem for weighted gene adjacencies”, Proceedings 12th International Symposium, ISBRA 2016, Lecture Notes in Computer Science, vol. 9683, Springer International Publishing, 2016, pp.200-210.
PUB | DOI | Download (ext.) | arXiv
 
2016 | Konferenzband | Veröffentlicht | PUB-ID: 2912258
S. Hölldobler, ed., “Genfamilienfreier Genomvergleich”, LNI, vol. D-16, 2016, pp. 91-100.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911748
T. Krahn, et al., “Complete Genome Sequence ofAcinetobacter baumanniiCIP 70.10, a Susceptible Reference Strain for Comparative Genome Analyses”, Genome Announcements, vol. 3, 2015, pp. e00850-15.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2677844
M. Dias Vieira Braga and J. Stoye, “Sorting linear genomes with rearrangements and indels”, IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol. 12, 2015, pp. 500-506.
PUB | DOI | WoS | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2726366
F.H. Viduani Martinez, et al., “On the family-free DCJ distance and similarity”, Algorithms for Molecular Biology, vol. 10, 2015, : 13.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2715682
P. Henning, et al., “Maui-VIA: a user-friendly software for visual identification, alignment, correction, and quantification of gas chromatography–mass spectrometry data”, Frontiers in Bioengineering and Biotechnology, vol. 2, 2015.
PUB | DOI | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2766708
C. Chen, et al., “Next-generation-sequencing of recurrent childhood high hyperdiploid acute lymphoblastic leukemia reveals mutations typically associated with high risk patients”, Leukemia research, 2015.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764612
R. Wittler, et al., “Repeat- and error-aware comparison of deletions”, Bioinformatics, vol. 31, 2015, pp. 2947-2954.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2015 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2757497
G. Holley, R. Wittler, and J. Stoye, “Bloom Filter Trie - a data structure for pan-genome storage”, Proceedings of WABI 2015, LNBI, vol. 9289, 2015, pp.217-230.
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2015 | Bielefelder E-Dissertation | PUB-ID: 2786037
R. Hilker, Development of a read mapping analysis software and computational pan genome analysis of 20 Pseudomonas aeruginosa strains, Bielefeld: Bielefeld University, 2015.
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2015 | Konferenzband | Veröffentlicht | PUB-ID: 2780229
J. Meidanis and J. Stoye, eds., “Proceedings of the 13th Annual Research in Computational Molecular Biology (RECOMB) Satellite Workshop on Comparative Genomics: Bioinformatics”, BMC Bioinformatics, vol. 16, 2015.
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2015 | Konferenzband | Veröffentlicht | PUB-ID: 2780232
J. Meidanis and J. Stoye, eds., “Proceedings of the 13th Annual Research in Computational Molecular Biology (RECOMB) Satellite Workshop on Comparative Genomics: Genomics”, BMC Genomics, vol. 16, 2015.
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2014 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2684241
F.H. Viduani Martinez, et al., “On the family-free DCJ distance”, Algorithms in Bioinformatics. WABI 2014, D. Brown and B. Morgenstern, eds., Lecture Notes in Bioinformatics, vol. 8701, Berlin ; Heidelberg: Springer Verlag, 2014, pp.174-186.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2687033
D. Dörr, et al., “Identifying Gene Clusters by Discovering Common Intervals in Indeterminate Strings”, BMC Genomics, vol. 15, 2014, pp. S2.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2685362
M. Lechner, et al., “Orthology Detection Combining Clustering and Synteny for Very Large Datasets”, PLoS ONE, vol. 9, 2014, pp. e105015.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2689773
S. Jünemann, et al., “GABenchToB: A Genome Assembly Benchmark Tuned on Bacteria and Benchtop Sequencers”, PLOS ONE, vol. 9, 2014, pp. e107014.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Bielefelder E-Dissertation | PUB-ID: 2723541
C. Ander, Bioinformatic methods for the analysis and comparison of metagenomes and metatranscriptomes, Bielefeld: Universitätsbibliothek Bielefeld, 2014.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2674387
R. Hilker, et al., “ReadXplorer - Visualization and Analysis of Mapped Sequences”, Bioinformatics, vol. 30, 2014, pp. 2247-2254.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2665038
P. Schwientek, et al., “Improving the genome annotation of the acarbose producer Actinoplanes sp. SE50/110 by sequencing enriched 5'-ends of primary transcripts”, Journal of Biotechnology, vol. 190, 2014, pp. 85-95.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2690122
N. Luhmann, et al., “Scaffolding of Ancient Contigs and Ancestral Reconstruction in a Phylogenetic Framework”, Proc. of BSB 2014, C. Sérgio, ed., LNBI, vol. 8826, Springer Verlag, 2014, pp.135-143.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2685988
T. Jakobi, et al., “Discovery of transcription start sites in the Chinese hamster genome by next-generation RNA sequencing”, Journal of Biotechnology, vol. 190, 2014, pp. 64-75.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Bielefelder E-Dissertation | PUB-ID: 2677466
N. Hoffmann, Computational methods for high-throughput metabolomics, Bielefeld: Universität Bielefeld, 2014.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2691246
E. Fueller, et al., “Genomic Inverse PCR for Exploration of Ligated Breakpoints (GIPFEL), a New Method to Detect Translocations in Leukemia”, PloS one, vol. 9, 2014, pp. 104419.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Lexikoneintrag | Veröffentlicht | PUB-ID: 2693552
J. Stoye, “Suffix Tree Construction”, Encyclopedia of Algorithms, M.-Y. Kao, ed., Springer Verlag, 2014.
PUB | DOI
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2643941
N. Hoffmann, et al., “BiPACE 2D – Graph-based multiple alignment for comprehensive two-dimensional gas chromatography–mass spectrometry”, Bioinformatics, vol. 30, 2014, pp. 988-995.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2693409
E. Fredrich, et al., “Metatranskriptomik der Mikrobiota aus der menschlichen Achselhöhle”, BIOspektrum, vol. 20, 2014, pp. 294-296.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2691732
B. Klippel, et al., “Carbohydrate-active enzymes identified by metagenomic analysis of deep-sea sediment bacteria”, Extremophiles, vol. 18, 2014, pp. 853-863.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2691279
V. Binder, et al., “A New Workflow for Whole-Genome Sequencing of Single Human Cells”, Human mutation, 2014.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Bielefelder E-Dissertation | PUB-ID: 2673418
M. Mascher, POPSEQ Anchoring and ordering contig assemblies from next generation sequencing data by population sequencing, Bielefeld: Universität Bielefeld, 2014.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2665333
B. Henrich, et al., “Mycoplasma salivarium as a Dominant Coloniser of Fanconi Anaemia Associated Oral Carcinoma”, PLoS ONE, vol. 9, 2014, pp. e92297.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2611641
M. Dias Vieira Braga and J. Stoye, “Restricted DCJ-Indel Model Revisited”, Advances in Bioinformatics and Computational Biology. BSB 2013, J.C. Setubal and N.F. Almeida, eds., Lecture Notes in Bioinformatics, vol. 8213, Cham: Springer Verlag, 2013, pp.36-46.
PUB | DOI
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2611630
E. Willing, et al., “On the Inversion-Indel Distance”, BMC Bioinformatics, vol. 14, 2013, : S3.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2013 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2611648
M. Dias Vieira Braga, et al., “The Potential of Family-Free Genome Comparison”, Models and Algorithms for Genome Evolution, C. Chauve, N. El-Mabrouk, and E. Tannier, eds., Computational Biology Series, vol. 19, Springer Verlag, 2013, pp.287-307.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2575011
C. Ander, et al., “metaBEETL: high-throughput analysis of heterogeneous microbial populations from shotgun DNA sequences”, BMC Bioinformatics, vol. 14, 2013, pp. S2.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2555342
P. He, et al., “Genome sequence of the plant growth promoting strain Bacillus amyloliquefaciens subsp. plantarum B9601-Y2 and expression of mersacidin and other secondary metabolites”, Journal of biotechnology, vol. 164, 2013, pp. 281-291.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2641228
S. Jünemann, et al., “Corrigendum: Updating benchtop sequencing performance comparison”, Nature biotechnology, vol. 31, 2013, pp. 1148.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2492825
S. Reuther, et al., “In vitro-induced response patterns of antileukemic T cells: characterization by spectratyping and immunophenotyping”, Clinical and Experimental Medicine, vol. 13, 2013, pp. 29-48.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2611643
A. Bergeron and J. Stoye, “The Genesis of the DCJ Formula”, Models and Algorithms for Genome Evolution, C. Chauve, N. El-Mabrouk, and E. Tannier, eds., Computational Biology Series, vol. 19, Springer Verlag, 2013, pp.63-81.
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2013 | Bielefelder E-Dissertation | PUB-ID: 2604883
J. Blom, Comparative genomics on gene and single nucleotide level, Bielefeld: Universitätsbibliothek, 2013.
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2013 | Bielefelder E-Dissertation | PUB-ID: 2594322
S.J. Janowski, VANESA - A bioinformatics software application for the modeling, visualization, analysis, and simulation of biological networks in systems biology applications, Bielefeld: Bielefeld University, 2013.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2575361
P. Krell, et al., “Next-generation-sequencing-spectratyping reveals public T-cell receptor repertoires in pediatric very severe aplastic anemia and identifies a beta chain CDR3 sequence associated with hepatitis-induced pathogenesis”, Haematologica, vol. 98, 2013, pp. 1388-1396.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Lexikoneintrag | Veröffentlicht | PUB-ID: 2577323
W. Gerlach and J. Stoye, “Taxonomic classification of metagenomic shotgun sequences with CARMA3”, Encyclopedia of Metagenomics, K.E. Nelson, ed., Springer Verlag, 2013.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2625914
T. Bergmann, et al., “Categorization of two-photon microscopy images of human cartilage into states of osteoarthritis”, Osteoarthritis And Cartilage, vol. 21, 2013, pp. 1074-1082.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2566922
S. Jünemann, et al., “Updating benchtop sequencing performance comparison”, Nature Biotechnology, vol. 31, 2013, pp. 294-296.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Konferenzband | Veröffentlicht | PUB-ID: 2616537
A. Darling and J. Stoye, eds., “Algorithms in Bioinformatics”, Lecture Notes in Bioinformatics, vol. 8126, 2013.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2611633
K. Jahn, et al., “Statistics for approximate gene clusters”, BMC Bioinformatics, vol. 14, 2013, pp. S14.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548236
P. Schwientek, et al., “Comparative RNA-sequencing of the acarbose producer Actinoplanes sp. SE50/110 cultivated in different growth media”, Journal of Biotechnology, vol. 167, 2013, pp. 166-177.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548286
V.M. Luque-Almagro, et al., “Draft whole genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344”, Environmental Microbiology, vol. 15, 2013, pp. 253-270.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2552092
R. Wittler, “Unraveling overlapping deletions by agglomerative clustering”, BMC Genomics, vol. 14, 2013, pp. S12.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529309
S. Bolzan de Campos, et al., “Changes in Root Bacterial Communities Associated to Two Different Development Stages of Canola (*Brassica napus* L. var oleifera) Evaluated through Next-Generation Sequencing”, Microbial Ecology, vol. 65, 2013, pp. 593-601.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2659331
P. Feijão and J. Meidanis, “Extending the Algebraic Formalism for Genome Rearrangements to Include Linear Chromosomes”, IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol. 10, 2013, pp. 819-831.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529202
M. Zakrzewski, et al., “MetaSAMS - A novel software platform for taxonomic classification, functional annotation and comparative analysis of metagenome datasets”, Journal of Biotechnology, vol. 167, 2013, pp. 156-165.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2560353
D. Dörr, et al., “Stochastic errors vs. modeling errors in distance based phylogenetic reconstructions”, Algorithms for Molecular Biology, vol. 7, 2012, pp. 22.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2512642
D. Dörr, A. Thévenin, and J. Stoye, “Gene family assignment-free comparative genomics”, BMC Bioinformatics, vol. 13, 2012, pp. S3.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2498160
J. Schröder, et al., “Complete genome sequence, lifestyle, and multi-drug resistance of the human pathogen Corynebacterium resistens DSM 45100 isolated from blood samples of a leukemia patient”, BMC Genomics, vol. 13, 2012, : 141.
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