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413 Publikationen

2019 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2937148
J. Alanko, H. Bannai, B. Cazaux, P. Peterlongo, and J. Stoye, in Proceedings of WABI 2019, Schloss Dagstuhl, Leibniz-Zentrum Für Informatik , Dagstuhl, 2019, p. 8:1-8:9.
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2019 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2936900
R. Wittler, in Proceedings of WABI 2019 (Eds.: K. Huber, D. Gusfield), Schloss Dagstuhl--Leibniz-Zentrum Fuer Informatik, Dagstuhl, Germany, 2019.
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2019 | Datenpublikation | PUB-ID: 2936848
D. Dörr, and D. Rubert, Supplementary Data for "Analysis of local genome rearrangement improves resolution of ancestral genomic maps in plants", Bielefeld University, 2019.
PUB | Dateien verfügbar | DOI
 
2019 | Herausgeber*in Sammelwerk | Veröffentlicht | PUB-ID: 2935998
Computational Methods for Microbiome Analysis, Frontiers Media, Lausanne, 2019.
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2019 | Preprint | PUB-ID: 2935604
R. Wittler, “Alignment- and reference-free phylogenomics with colored de-Bruijn graphs”, arXiv:1905.04165, 2019.
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2019 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2932883
D. Dörr, and J. Stoye, in Bioinformatics and Phylogenetics (Ed.: T. Warnow), Springer , Cham, 2019, p. 361-372.
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933161
H. Hassan, and S. Shanak, “GOTrapper. A tool to navigate through branches of gene ontology hierarchy”, BMC Bioinformatics, 2019, 20, : 20.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932884
H. Oey, M. Zakrzewski, K. Gravermann, N. D. Young, P. K. Korhonen, G. N. Gobert, S. Nawaratna, S. Hasan, D. M. Martínez, H. You, et al., “Whole-genome sequence of the bovine blood fluke Schistosoma bovis supports interspecific hybridization with S. haematobium”, PLOS Pathogens, 2019, 15, : e1007513.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919005
T. Schulz, J. Stoye, and D. Dörr, “GraphTeams. A method for discovering spatial gene clusters in Hi-C sequencing data”, BMC Genomics, 2018, 19, : 308.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919006
D. Rubert, E. A. Hoshino, M. Dias Vieira Braga, J. Stoye, and F. H. V. Martinez, “Computing the family-free DCJ similarity”, BMC Bioinformatics, 2018, 19, : 152.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918481
N. Luhmann, C. Chauve, J. Stoye, and R. Wittler, “Scaffolding of Ancient Contigs and Ancestral Reconstruction in a Phylogenetic Framework”, IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2018, 15, 2094-2100.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932754
S. Bhatia, P. Feijão, and A. R. Francis, “Position and Content Paradigms in Genome Rearrangements. The Wild and Crazy World of Permutations in Genomics”, BULLETIN OF MATHEMATICAL BIOLOGY, 2018, 80, 3227-3246.
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919346
D. Hagenfeld, R. Koch, S. Jünemann, K. Prior, I. Harks, P. Eickholz, T. Hoffmann, T. - S. Kim, T. Kocher, J. Meyle, et al., “Do we treat our patients or rather periodontal microbes with adjunctive antibiotics in periodontal therapy? A 16S rDNA microbial community analysis”, PLOS ONE, 2018, 13, : e0195534.
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2018 | Bielefelder E-Dissertation | PUB-ID: 2918485
G. Holley, Pan-genome Search and Storage, Universität Bielefeld, Bielefeld, 2018.
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2018 | Bielefelder E-Dissertation | PUB-ID: 2919356
E. Willing, On Distance and Sorting of the Double Cut-and-Join and the Inversion-*indel* Model, Universität Bielefeld, Bielefeld, 2018.
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2018 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2930445
L. Cunha, Y. Diekmann, L. Kowada, and J. Stoye, in Proceedings of BSB 2018, Springer Verlag, 2018, p. 26-37.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930268
G. Holley, R. Wittler, J. Stoye, and F. Hach, “Dynamic Alignment-Free and Reference-Free Read Compression”, JOURNAL OF COMPUTATIONAL BIOLOGY, 2018, 25, 825-836.
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2913921
T. Zekic, G. Holley, and J. Stoye, in Comparative Genomics. Methods and Protocols (Eds.: J.C. Setubal, P. Stadler, J. Stoye), Springer Verlag, New York, 2018, p. 29-53.
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2018 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2913922
D. Dörr, P. Feijão, and J. Stoye, in Comparative Genomics: Methods and Protocols (Eds.: J.C. Setubal, P. Stadler, J. Stoye), Springer Verlag, New York, 2018, p. 331-342.
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2018 | Herausgeber*in Sammelwerk | Veröffentlicht | PUB-ID: 2913920
Comparative Genomics: Methods and Protocols, Springer Verlag, New York, 2018.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919012
S. Jaenicke, S. Albaum, P. Blumenkamp, B. Linke, J. Stoye, and A. Goesmann, “Flexible metagenome analysis using the MGX framework”, Microbiome, 2018, 6, : 76.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2908574
N. Luhmann, M. Lafond, A. Thévenin, A. Ouangraoua, R. Wittler, and C. Chauve, “The SCJ Small Parsimony Problem for Weighted Gene Adjacencies”, IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2017, 14.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2912492
N. Luhmann, D. Dörr, and C. Chauve, “Comparative scaffolding and gap filling of ancient bacterial genomes applied to two ancient Yersinia pestis genomes”, Microbial Genomics, 2017, 3.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913556
S. Jünemann, N. Kleinbölting, S. Jaenicke, C. Henke, J. Hassa, J. Nelkner, Y. Stolze, S. Albaum, A. Schlüter, A. Goesmann, et al., “Bioinformatics for NGS-based metagenomics and the application to biogas research”, Journal of Biotechnology, 2017, 261, 10-23.
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2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2913015
D. Rubert, G. L. Medeiros, E. A. Hoshino, M. Dias Vieira Braga, J. Stoye, and F. H. V. Martinez, in Comparative Genomics. RECOMB-CG 2017 (Eds.: J. Meidanis, L. Nakhleh), Springer Verlag, Cham, 2017, p. 76-100.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909057
D. Rubert, P. Feijão, M. Dias Vieira Braga, J. Stoye, and F. H. V. Martinez, “Approximating the DCJ distance of balanced genomes in linear time”, Algorithms for Molecular Biology, 2017, 12, : 3.
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2017 | Bielefelder E-Dissertation | PUB-ID: 2909213
N. Luhmann, Phylogenetic assembly of paleogenomes integrating ancient DNA data, Universität Bielefeld, Bielefeld, 2017.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916552
P. H. da Silva, R. Machado, S. Dantas, and M. Dias Vieira Braga, “Genomic Distance with High Indel Costs”, IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2017, 14, 728-732.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911814
D. Dörr, M. Balaban, P. Feijão, and C. Chauve, “The gene family-free median of three”, Algorithms for Molecular Biology, 2017, 12, : 14.
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2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2909409
L. Cunha, S. Dantas, T. Gagie, R. Wittler, L. Kowada, and J. Stoye, in Proceedings of CPM 2017, 2017, p. 19:1-19:9.
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2017 | Preprint | Veröffentlicht | PUB-ID: 2908521
L. Cunha, S. Dantas, T. Gagie, R. Wittler, L. Kowada, and J. Stoye, “Faster Jumbled Indexing for Binary Run-Length Encoded Strings”, arXiv: 1702.01280, 2017.
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2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2907587
G. Holley, R. Wittler, J. Stoye, and F. Hach, in Proceedings of RECOMB 2017, 2017, p. 50-65.
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2017 | Sammelwerksbeitrag | Im Druck | PUB-ID: 2913924
Y. Anselmetti, N. Luhmann, S. Bérard, E. Tannier, and C. Chauve, in Comparative Genomics (Eds.: J.C. Setubal, P. Stadler, J. Stoye), Springer Verlag, In Press.
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2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2913016
T. Schulz, J. Stoye, and D. Dörr, in Proceedings of RECOMB-CG 2017, Springer Verlag, Berlin, 2017, p. 197-212.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909967
D. Dörr, L. A. B. Kowada, F. E. Soares de Araujo, S. Deshpande, S. Dantas, B. M. E. Moret, and J. Stoye, “New Genome Similarity Measures based on Conserved Gene Adjacencies”, Journal of Computational Biology, 2017, 24, 616-634.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901477
S. E. Ahmed Raza, D. Langenkämper, K. Sirinukunwattana, D. Epstein, T. W. Nattkemper, and N. M. Rajpoot, “Robust normalization protocols for multiplexed fluorescence bioimage analysis”, BioData Mining, 2016, 9, : 11.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905930
S. Winter, K. Jahn, S. Wehner, L. Kuchenbecker, M. Marz, J. Stoye, and S. Böcker, “Finding approximate gene clusters with GECKO 3”, Nucleic Acids Research, 2016, 44, 9600-9610.
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2016 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2903708
D. Rubert, P. Feijão, M. Dias Vieira Braga, J. Stoye, and F. H. V. Martinez, in Algorithms in Bioinformatics. WABI 2016 (Eds.: M. Frith, C.N. Storm Pedersen), Springer, Cham, 2016, p. 293-306.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900129
G. Holley, R. Wittler, and J. Stoye, “Bloom Filter Trie: an alignment-free and reference-free data structure for pan-genome storage”, Algorithms for Molecular Biology, 2016, 11, : 3.
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2016 | Bielefelder E-Dissertation | PUB-ID: 2902049
D. Dörr, Gene family-free genome comparison, Universität Bielefeld, Bielefeld, 2016.
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2016 | Bielefelder E-Dissertation | PUB-ID: 2906743
A. Bremges, Assembling the microbial dark matter, Universität Bielefeld, Bielefeld, 2016.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900943
D. Langenkämper, T. Jakobi, D. Feld, L. Jelonek, A. Goesmann, and T. W. Nattkemper, “Comparison of Acceleration Techniques for Selected Low-Level Bioinformatics Operations”, Frontiers in Genetics, 2016, 7, : 5.
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2016 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2901740
N. Luhmann, A. Thévenin, A. Ouangraoua, R. Wittler, and C. Chauve, in Proceedings 12th International Symposium, ISBRA 2016, Springer International Publishing, 2016, p. 200-210.
PUB | DOI | Download (ext.) | arXiv
 
2016 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2900111
L. A. B. Kowada, D. Doerr, S. Dantas, and J. Stoye, in Research in Computational Molecular Biology. RECOMB 2016 (Ed.: M. Singh), Springer, 2016, p. 204-224.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900421
L. Krause, K. Nones, K. A. Loffler, D. Nancarrow, H. Oey, Y. H. Tang, N. J. Wayte, A. M. Patch, K. Patel, S. Brosda, et al., “Identification of the CIMP-like subtype and aberrant methylation of members of the chromosomal segregation and spindle assembly pathways in esophageal adenocarcinoma”, Carcinogenesis, 2016, 37, 356-365.
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2016 | Konferenzband | Veröffentlicht | PUB-ID: 2912258
“Genfamilienfreier Genomvergleich”, LNI, 2016, D-16, 91-100.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911748
T. Krahn, D. Wibberg, I. Maus, A. Winkler, A. Pühler, L. Poirel, and A. Schlüter, “Complete Genome Sequence ofAcinetobacter baumanniiCIP 70.10, a Susceptible Reference Strain for Comparative Genome Analyses”, Genome Announcements, 2015, 3, e00850-15.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2677844
M. Dias Vieira Braga, and J. Stoye, “Sorting linear genomes with rearrangements and indels”, IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2015, 12, 500-506.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2726366
F. H. Viduani Martinez, P. Feijão, M. Dias Vieira Braga, and J. Stoye, “On the family-free DCJ distance and similarity”, Algorithms for Molecular Biology, 2015, 10, : 13.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2715682
P. Henning, J. L. Kuich, N. Hoffmann, and K. Stefan, “Maui-VIA: a user-friendly software for visual identification, alignment, correction, and quantification of gas chromatography–mass spectrometry data”, Frontiers in Bioengineering and Biotechnology, 2015, 2.
PUB | DOI | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2766708
C. Chen, C. Bartenhagen, M. Gombert, V. Okpanyi, V. Binder, S. Röttgers, J. Bradtke, A. Teigler-Schlegel, J. Harbott, S. Ginzel, et al., “Next-generation-sequencing of recurrent childhood high hyperdiploid acute lymphoblastic leukemia reveals mutations typically associated with high risk patients”, Leukemia research, 2015.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764612
R. Wittler, T. Marschall, A. Schönhuth, and V. Makinen, “Repeat- and error-aware comparison of deletions”, Bioinformatics, 2015, 31, 2947-2954.
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2015 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2757497
G. Holley, R. Wittler, and J. Stoye, in Proceedings of WABI 2015, 2015, p. 217-230.
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2015 | Bielefelder E-Dissertation | PUB-ID: 2786037
R. Hilker, Development of a read mapping analysis software and computational pan genome analysis of 20 Pseudomonas aeruginosa strains, Bielefeld University, Bielefeld, 2015.
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2015 | Konferenzband | Veröffentlicht | PUB-ID: 2780229
“Proceedings of the 13th Annual Research in Computational Molecular Biology (RECOMB) Satellite Workshop on Comparative Genomics: Bioinformatics”, BMC Bioinformatics, 2015, 16.
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2015 | Konferenzband | Veröffentlicht | PUB-ID: 2780232
“Proceedings of the 13th Annual Research in Computational Molecular Biology (RECOMB) Satellite Workshop on Comparative Genomics: Genomics”, BMC Genomics, 2015, 16.
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2014 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2684241
F. H. Viduani Martinez, P. Feijão, M. Dias Vieira Braga, and J. Stoye, in Algorithms in Bioinformatics. WABI 2014 (Eds.: D. Brown, B. Morgenstern), Springer Verlag, Berlin ; Heidelberg, 2014, p. 174-186.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2687033
D. Dörr, J. Stoye, S. Böcker, and K. Jahn, “Identifying Gene Clusters by Discovering Common Intervals in Indeterminate Strings”, BMC Genomics, 2014, 15, S2.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2685362
M. Lechner, M. Hernandez-Rosales, D. Dörr, N. Wieseke, A. Thévenin, J. Stoye, R. K. Hartmann, S. J. Prohaska, and P. F. Stadler, “Orthology Detection Combining Clustering and Synteny for Very Large Datasets”, PLoS ONE, 2014, 9, e105015.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2689773
S. Jünemann, K. Prior, A. Albersmeier, S. Albaum, J. Kalinowski, A. Goesmann, J. Stoye, and D. Harmsen, “GABenchToB: A Genome Assembly Benchmark Tuned on Bacteria and Benchtop Sequencers”, PLOS ONE, 2014, 9, e107014.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Bielefelder E-Dissertation | PUB-ID: 2723541
C. Ander, Bioinformatic methods for the analysis and comparison of metagenomes and metatranscriptomes, Universitätsbibliothek Bielefeld, Bielefeld, 2014.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2674387
R. Hilker, K. B. Stadermann, D. Doppmeier, J. Kalinowski, J. Stoye, J. Straube, J. Winnebald, and A. Goesmann, “ReadXplorer - Visualization and Analysis of Mapped Sequences”, Bioinformatics, 2014, 30, 2247-2254.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2665038
P. Schwientek, A. Neshat, J. Kalinowski, A. Klein, C. Rückert, S. Schneiker-Bekel, S. Wendler, J. Stoye, and A. Pühler, “Improving the genome annotation of the acarbose producer Actinoplanes sp. SE50/110 by sequencing enriched 5'-ends of primary transcripts”, Journal of Biotechnology, 2014, 190, 85-95.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2685988
T. Jakobi, K. Brinkrolf, A. Tauch, T. Noll, J. Stoye, A. Pühler, and A. Goesmann, “Discovery of transcription start sites in the Chinese hamster genome by next-generation RNA sequencing”, Journal of Biotechnology, 2014, 190, 64-75.
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2014 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2690122
N. Luhmann, C. Chauve, J. Stoye, and R. Wittler, in Proc. of BSB 2014 (Ed.: C. Sérgio), Springer Verlag, 2014, p. 135-143.
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2014 | Bielefelder E-Dissertation | PUB-ID: 2677466
N. Hoffmann, Computational methods for high-throughput metabolomics, Universität Bielefeld, Bielefeld, 2014.
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2014 | Lexikoneintrag | Veröffentlicht | PUB-ID: 2693552
J. Stoye, in Encyclopedia of Algorithms (Ed.: M.-Y. Kao), Springer Verlag, 2014.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2691246
E. Fueller, D. Schaefer, U. Fischer, P. Krell, M. Stanulla, A. Borkhardt, and R. K. Slany, “Genomic Inverse PCR for Exploration of Ligated Breakpoints (GIPFEL), a New Method to Detect Translocations in Leukemia”, PloS one, 2014, 9, 104419.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2693409
E. Fredrich, C. Ander, J. Stoye, I. Brune, and A. Tauch, “Metatranskriptomik der Mikrobiota aus der menschlichen Achselhöhle”, BIOspektrum, 2014, 20, 294-296.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2643941
N. Hoffmann, M. Wilhelm, A. Doebbe, K. Niehaus, and J. Stoye, “BiPACE 2D – Graph-based multiple alignment for comprehensive two-dimensional gas chromatography–mass spectrometry”, Bioinformatics, 2014, 30, 988-995.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2691732
B. Klippel, K. Sahm, A. Basner, S. Wiebusch, P. John, U. Lorenz, A. Peters, F. Abe, K. Takahashi, O. Kaiser, et al., “Carbohydrate-active enzymes identified by metagenomic analysis of deep-sea sediment bacteria”, Extremophiles, 2014, 18, 853-863.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2691279
V. Binder, C. Bartenhagen, V. Okpanyi, M. Gombert, B. Moehlendick, B. Behrens, H. - U. Klein, H. Rieder, P. Krell, M. Dugas, et al., “A New Workflow for Whole-Genome Sequencing of Single Human Cells”, Human mutation, 2014.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Bielefelder E-Dissertation | PUB-ID: 2673418
M. Mascher, POPSEQ Anchoring and ordering contig assemblies from next generation sequencing data by population sequencing, Universität Bielefeld, Bielefeld, 2014.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2665333
B. Henrich, M. Rumming, A. Sczyrba, E. Velleuer, R. Dietrich, W. Gerlach, M. Gombert, S. Rahn, J. Stoye, A. Borkhardt, et al., “Mycoplasma salivarium as a Dominant Coloniser of Fanconi Anaemia Associated Oral Carcinoma”, PLoS ONE, 2014, 9, e92297.
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2013 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2611641
M. Dias Vieira Braga, and J. Stoye, in Advances in Bioinformatics and Computational Biology. BSB 2013 (Eds.: J.C. Setubal, N.F. Almeida), Springer Verlag, Cham, 2013, p. 36-46.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2611630
E. Willing, S. Zaccaria, M. Dias Vieira Braga, and J. Stoye, “On the Inversion-Indel Distance”, BMC Bioinformatics, 2013, 14, : S3.
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2013 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2611648
M. Dias Vieira Braga, C. Chauve, D. Dörr, K. Jahn, J. Stoye, A. Thévenin, and R. Wittler, in Models and Algorithms for Genome Evolution (Eds.: C. Chauve, N. El-Mabrouk, E. Tannier), Springer Verlag, 2013, p. 287-307.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2575011
C. Ander, O. B. Schulz-Trieglaff, J. Stoye, and A. J. Cox, “metaBEETL: high-throughput analysis of heterogeneous microbial populations from shotgun DNA sequences”, BMC Bioinformatics, 2013, 14, S2.
PUB | DOI | Download (ext.) | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2555342
P. He, K. Hao, J. Blom, C. Rückert, J. Vater, Z. Mao, Y. Wu, M. Hou, P. He, Y. He, et al., “Genome sequence of the plant growth promoting strain Bacillus amyloliquefaciens subsp. plantarum B9601-Y2 and expression of mersacidin and other secondary metabolites”, Journal of biotechnology, 2013, 164, 281-291.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2641228
S. Jünemann, F. J. Sedlazeck, K. Prior, A. Albersmeier, U. John, J. Kalinowski, A. Mellmann, A. Goesmann, A. von Haeseler, J. Stoye, et al., “Corrigendum: Updating benchtop sequencing performance comparison”, Nature biotechnology, 2013, 31, 1148.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2492825
S. Reuther, H. Schmetzer, F. R. Schuster, P. Krell, C. Grabrucker, A. Liepert, T. Kroell, H. - J. Kolb, A. Borkhardt, and R. Buhmann, “In vitro-induced response patterns of antileukemic T cells: characterization by spectratyping and immunophenotyping”, Clinical and Experimental Medicine, 2013, 13, 29-48.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2611643
A. Bergeron, and J. Stoye, in Models and Algorithms for Genome Evolution (Eds.: C. Chauve, N. El-Mabrouk, E. Tannier), Springer Verlag, 2013, p. 63-81.
PUB | DOI
 
2013 | Bielefelder E-Dissertation | PUB-ID: 2604883
J. Blom, Comparative genomics on gene and single nucleotide level, Universitätsbibliothek, Bielefeld, 2013.
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2013 | Bielefelder E-Dissertation | PUB-ID: 2594322
S. J. Janowski, VANESA - A bioinformatics software application for the modeling, visualization, analysis, and simulation of biological networks in systems biology applications, Bielefeld University, Bielefeld, 2013.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2575361
P. Krell, S. Reuther, U. Fischer, T. Keller, S. Weber, M. Gombert, F. R. Schuster, C. Asang, P. Stepensky, B. Strahm, et al., “Next-generation-sequencing-spectratyping reveals public T-cell receptor repertoires in pediatric very severe aplastic anemia and identifies a beta chain CDR3 sequence associated with hepatitis-induced pathogenesis”, Haematologica, 2013, 98, 1388-1396.
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2013 | Lexikoneintrag | Veröffentlicht | PUB-ID: 2577323
W. Gerlach, and J. Stoye, in Encyclopedia of Metagenomics (Ed.: K.E. Nelson), Springer Verlag, 2013.
PUB | DOI
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2566922
S. Jünemann, F. J. Sedlazeck, K. Prior, A. Albersmeier, U. John, J. Kalinowski, A. Mellmann, A. Goesmann, A. von Haeseler, J. Stoye, et al., “Updating benchtop sequencing performance comparison”, Nature Biotechnology, 2013, 31, 294-296.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2625914
T. Bergmann, U. Maeder, M. Fiebich, M. Dickob, T. W. Nattkemper, and D. Anselmetti, “Categorization of two-photon microscopy images of human cartilage into states of osteoarthritis”, Osteoarthritis And Cartilage, 2013, 21, 1074-1082.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Konferenzband | Veröffentlicht | PUB-ID: 2616537
“Algorithms in Bioinformatics”, Lecture Notes in Bioinformatics, 2013, 8126.
PUB | DOI
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2611633
K. Jahn, S. Winter, J. Stoye, and S. Böcker, “Statistics for approximate gene clusters”, BMC Bioinformatics, 2013, 14, S14.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548236
P. Schwientek, S. Wendler, A. Neshat, C. Eirich, C. Rückert, A. Klein, U. F. Wehmeier, J. Kalinowski, J. Stoye, and A. Pühler, “Comparative RNA-sequencing of the acarbose producer Actinoplanes sp. SE50/110 cultivated in different growth media”, Journal of Biotechnology, 2013, 167, 166-177.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548286
V. M. Luque-Almagro, F. Acera, M. I. Igeño, D. Wibberg, M. D. Roldán, L. P. Sáez, M. Hennig, A. Quesada, M. J. Huertas, J. Blom, et al., “Draft whole genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344”, Environmental Microbiology, 2013, 15, 253-270.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2552092
R. Wittler, “Unraveling overlapping deletions by agglomerative clustering”, BMC Genomics, 2013, 14, S12.
PUB | Dateien verfügbar | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529309
S. Bolzan de Campos, J. - W. Youn, R. Farina, S. Jaenicke, S. Jünemann, R. Szczepanowski, A. Beneduzi, L. K. Vargas, V. F. Wendisch, and L. Passaglia, “Changes in Root Bacterial Communities Associated to Two Different Development Stages of Canola (*Brassica napus* L. var oleifera) Evaluated through Next-Generation Sequencing”, Microbial Ecology, 2013, 65, 593-601.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2659331
P. Feijão, and J. Meidanis, “Extending the Algebraic Formalism for Genome Rearrangements to Include Linear Chromosomes”, IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2013, 10, 819-831.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529202
M. Zakrzewski, T. Bekel, C. Ander, A. Pühler, O. Rupp, J. Stoye, A. Schlüter, and A. Goesmann, “MetaSAMS - A novel software platform for taxonomic classification, functional annotation and comparative analysis of metagenome datasets”, Journal of Biotechnology, 2013, 167, 156-165.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2560353
D. Dörr, I. Gronau, S. Moran, and I. Yavneh, “Stochastic errors vs. modeling errors in distance based phylogenetic reconstructions”, Algorithms for Molecular Biology, 2012, 7, 22.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2512642
D. Dörr, A. Thévenin, and J. Stoye, “Gene family assignment-free comparative genomics”, BMC Bioinformatics, 2012, 13, S3.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2498160
J. Schröder, I. Maus, K. Meyer, S. Wördemann, J. Blom, S. Jaenicke, J. Schneider, E. Trost, and A. Tauch, “Complete genome sequence, lifestyle, and multi-drug resistance of the human pathogen Corynebacterium resistens DSM 45100 isolated from blood samples of a leukemia patient”, BMC Genomics, 2012, 13, : 141.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2517239
N. Hoffmann, M. Keck, H. Neuweger, M. Wilhelm, P. Högy, K. Niehaus, and J. Stoye, “Combining peak- and chromatogram-based retention time alignment algorithms for multiple chromatography-mass spectrometry datasets”, BMC Bioinformatics, 2012, 13, 21.
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