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414 Publikationen

2019 | Zeitschriftenaufsatz | Im Druck | PUB-ID: 2937712
Rubert D, Martinez FHV, Stoye J, Dörr D. Analysis of local genome rearrangement improves resolution of ancestral genomic maps in plants. BMC Genomics. In Press.
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2019 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2937148
Alanko J, Bannai H, Cazaux B, Peterlongo P, Stoye J. Finding All Maximal Perfect Haplotype Blocks in Linear Time. In: Proceedings of WABI 2019. Leibniz International Proceedings in Informatics. LIPIcs. Vol 143. Dagstuhl: Schloss Dagstuhl, Leibniz-Zentrum für Informatik ; 2019: 8:1-8:9.
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2019 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2936900
Wittler R. Alignment- and reference-free phylogenomics with colored de Bruijn graphs. In: Huber K, Gusfield D, eds. Proceedings of WABI 2019. LIPIcs. Vol 143. Dagstuhl, Germany: Schloss Dagstuhl--Leibniz-Zentrum fuer Informatik; 2019.
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2019 | Datenpublikation | PUB-ID: 2936848
Dörr D, Rubert D. Supplementary Data for "Analysis of local genome rearrangement improves resolution of ancestral genomic maps in plants". Bielefeld University; 2019.
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2019 | Herausgeber*in Sammelwerk | Veröffentlicht | PUB-ID: 2935998
Setubal JC, Stoye J, Dutilh BE, eds. Computational Methods for Microbiome Analysis. Frontiers Research Topics. Lausanne: Frontiers Media; 2019.
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2019 | Preprint | PUB-ID: 2935604
Wittler R. Alignment- and reference-free phylogenomics with colored de-Bruijn graphs. arXiv:1905.04165. 2019.
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2019 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2932883
Dörr D, Stoye J. A Perspective on Comparative and Functional Genomics. In: Warnow T, ed. Bioinformatics and Phylogenetics. Computational Biology. Vol 29. Cham: Springer ; 2019: 361-372.
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2933161
Hassan H, Shanak S. GOTrapper. A tool to navigate through branches of gene ontology hierarchy. BMC Bioinformatics. 2019;20(1): 20.
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932884
Oey H, Zakrzewski M, Gravermann K, et al. Whole-genome sequence of the bovine blood fluke Schistosoma bovis supports interspecific hybridization with S. haematobium. PLOS Pathogens. 2019;15(1): e1007513.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919005
Schulz T, Stoye J, Dörr D. GraphTeams. A method for discovering spatial gene clusters in Hi-C sequencing data. BMC Genomics. 2018;19(Suppl. 5): 308.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919006
Rubert D, Hoshino EA, Dias Vieira Braga M, Stoye J, Martinez FHV. Computing the family-free DCJ similarity. BMC Bioinformatics. 2018;19(Suppl. 6): 152.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918481
Luhmann N, Chauve C, Stoye J, Wittler R. Scaffolding of Ancient Contigs and Ancestral Reconstruction in a Phylogenetic Framework. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 2018;15(6):2094-2100.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932754
Bhatia S, Feijão P, Francis AR. Position and Content Paradigms in Genome Rearrangements. The Wild and Crazy World of Permutations in Genomics. BULLETIN OF MATHEMATICAL BIOLOGY. 2018;80(12):3227-3246.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919346
Hagenfeld D, Koch R, Jünemann S, et al. Do we treat our patients or rather periodontal microbes with adjunctive antibiotics in periodontal therapy? A 16S rDNA microbial community analysis. PLOS ONE. 2018;13(4): e0195534.
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2018 | Bielefelder E-Dissertation | PUB-ID: 2918485
Holley G. Pan-genome Search and Storage. Bielefeld: Universität Bielefeld; 2018.
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2018 | Bielefelder E-Dissertation | PUB-ID: 2919356
Willing E. On Distance and Sorting of the Double Cut-and-Join and the Inversion-*indel* Model. Bielefeld: Universität Bielefeld; 2018.
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2018 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2930445
Cunha L, Diekmann Y, Kowada L, Stoye J. Identifying Maximal Perfect Haplotype Blocks. In: Proceedings of BSB 2018. LNBI. Vol 11228. Springer Verlag; 2018: 26-37.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2930268
Holley G, Wittler R, Stoye J, Hach F. Dynamic Alignment-Free and Reference-Free Read Compression. JOURNAL OF COMPUTATIONAL BIOLOGY. 2018;25(7):825-836.
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2018 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2913921
Zekic T, Holley G, Stoye J. Pan-genome Storage and Analysis Techniques. In: Setubal JC, Stadler P, Stoye J, eds. Comparative Genomics. Methods and Protocols. Methods in Molecular Biology. Vol 1704. New York: Springer Verlag; 2018: 29-53.
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2018 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2913922
Dörr D, Feijão P, Stoye J. Family-Free Genome Comparison. In: Setubal JC, Stadler P, Stoye J, eds. Comparative Genomics: Methods and Protocols. Methods in Molecular Biology. Vol 1704. New York: Springer Verlag; 2018: 331-342.
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2018 | Herausgeber*in Sammelwerk | Veröffentlicht | PUB-ID: 2913920
Setubal JC, Stadler P, Stoye J, eds. Comparative Genomics: Methods and Protocols. Methods in Molecular Biology. Vol 1704. New York: Springer Verlag; 2018.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919012
Jaenicke S, Albaum S, Blumenkamp P, Linke B, Stoye J, Goesmann A. Flexible metagenome analysis using the MGX framework. Microbiome. 2018;6: 76.
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2017 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2908574
Luhmann N, Lafond M, Thévenin A, Ouangraoua A, Wittler R, Chauve C. The SCJ Small Parsimony Problem for Weighted Gene Adjacencies. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 2017;14.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2912492
Luhmann N, Dörr D, Chauve C. Comparative scaffolding and gap filling of ancient bacterial genomes applied to two ancient Yersinia pestis genomes. Microbial Genomics. 2017;3(9).
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2913556
Jünemann S, Kleinbölting N, Jaenicke S, et al. Bioinformatics for NGS-based metagenomics and the application to biogas research. Journal of Biotechnology. 2017;261(SI):10-23.
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2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2913015
Rubert D, Medeiros GL, Hoshino EA, Dias Vieira Braga M, Stoye J, Martinez FHV. Algorithms for Computing the Family-Free Genomic Similarity under DCJ. In: Meidanis J, Nakhleh L, eds. Comparative Genomics. RECOMB-CG 2017. Lecture Notes in Bioinformatics. Vol 10562. Cham: Springer Verlag; 2017: 76-100.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909057
Rubert D, Feijão P, Dias Vieira Braga M, Stoye J, Martinez FHV. Approximating the DCJ distance of balanced genomes in linear time. Algorithms for Molecular Biology. 2017;12: 3.
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2017 | Bielefelder E-Dissertation | PUB-ID: 2909213
Luhmann N. Phylogenetic assembly of paleogenomes integrating ancient DNA data. Bielefeld: Universität Bielefeld; 2017.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2916552
da Silva PH, Machado R, Dantas S, Dias Vieira Braga M. Genomic Distance with High Indel Costs. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 2017;14(3):728-732.
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2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2909409
Cunha L, Dantas S, Gagie T, Wittler R, Kowada L, Stoye J. Fast and Simple Jumbled Indexing for Binary Run-Length Encoded Strings. In: Proceedings of CPM 2017. LIPIcs. Vol 78. 2017: 19:1-19:9.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911814
Dörr D, Balaban M, Feijão P, Chauve C. The gene family-free median of three. Algorithms for Molecular Biology. 2017;12: 14.
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2017 | Preprint | Veröffentlicht | PUB-ID: 2908521
Cunha L, Dantas S, Gagie T, Wittler R, Kowada L, Stoye J. Faster Jumbled Indexing for Binary Run-Length Encoded Strings. arXiv: 1702.01280. 2017.
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2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2907587
Holley G, Wittler R, Stoye J, Hach F. Dynamic Alignment-Free and Reference-Free Read Compression. In: Proceedings of RECOMB 2017. Lecture Notes in Bioinformatics. Vol 10229. 2017: 50-65.
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2017 | Sammelwerksbeitrag | Im Druck | PUB-ID: 2913924
Anselmetti Y, Luhmann N, Bérard S, Tannier E, Chauve C. Comparative Methods for Reconstructing Ancient Genome Organization. In: Setubal JC, Stadler P, Stoye J, eds. Comparative Genomics. Methods in Molecular Biology. Springer Verlag; In Press.
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2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2913016
Schulz T, Stoye J, Dörr D. Finding Teams in Graphs and its Application to Spatial Gene Cluster Discovery. In: Proceedings of RECOMB-CG 2017. Lecture Notes in Bioinformatics. Vol 1704. Berlin: Springer Verlag; 2017: 197-212.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909967
Dörr D, Kowada LAB, Soares de Araujo FE, et al. New Genome Similarity Measures based on Conserved Gene Adjacencies. Journal of Computational Biology. 2017;24(6):616-634.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901477
Ahmed Raza SE, Langenkämper D, Sirinukunwattana K, Epstein D, Nattkemper TW, Rajpoot NM. Robust normalization protocols for multiplexed fluorescence bioimage analysis. BioData Mining. 2016;9(1): 11.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905930
Winter S, Jahn K, Wehner S, et al. Finding approximate gene clusters with GECKO 3. Nucleic Acids Research. 2016;44(20):9600-9610.
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2016 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2903708
Rubert D, Feijão P, Dias Vieira Braga M, Stoye J, Martinez FHV. A Linear Time Approximation Algorithm for the DCJ Distance for Genomes with Bounded Number of Duplicates. In: Frith M, Storm Pedersen CN, eds. Algorithms in Bioinformatics. WABI 2016. Lecture Notes in Bioinformatics. Vol 9838. Cham: Springer; 2016: 293-306.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900129
Holley G, Wittler R, Stoye J. Bloom Filter Trie: an alignment-free and reference-free data structure for pan-genome storage. Algorithms for Molecular Biology. 2016;11: 3.
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2016 | Bielefelder E-Dissertation | PUB-ID: 2906743
Bremges A. Assembling the microbial dark matter. Bielefeld: Universität Bielefeld; 2016.
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2016 | Bielefelder E-Dissertation | PUB-ID: 2902049
Dörr D. Gene family-free genome comparison. Bielefeld: Universität Bielefeld; 2016.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900943
Langenkämper D, Jakobi T, Feld D, Jelonek L, Goesmann A, Nattkemper TW. Comparison of Acceleration Techniques for Selected Low-Level Bioinformatics Operations. Frontiers in Genetics. 2016;7: 5.
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2016 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2900111
Kowada LAB, Doerr D, Dantas S, Stoye J. New Genome Similarity Measures based on Conserved Gene Adjacencies. In: Singh M, ed. Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Bioinformatics (LNBI). Vol 9649. Springer; 2016: 204-224.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900421
Krause L, Nones K, Loffler KA, et al. Identification of the CIMP-like subtype and aberrant methylation of members of the chromosomal segregation and spindle assembly pathways in esophageal adenocarcinoma. Carcinogenesis. 2016;37(4):356-365.
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2016 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2901740
Luhmann N, Thévenin A, Ouangraoua A, Wittler R, Chauve C. The SCJ small parsimony problem for weighted gene adjacencies. In: Proceedings 12th International Symposium, ISBRA 2016. Lecture Notes in Computer Science. Vol 9683. Springer International Publishing; 2016: 200-210.
PUB | DOI | Download (ext.) | arXiv
 
2016 | Konferenzband | Veröffentlicht | PUB-ID: 2912258
Hölldobler S, ed. Genfamilienfreier Genomvergleich. LNI. 2016;D-16:91-100.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2911748
Krahn T, Wibberg D, Maus I, et al. Complete Genome Sequence ofAcinetobacter baumanniiCIP 70.10, a Susceptible Reference Strain for Comparative Genome Analyses. Genome Announcements. 2015;3(4):e00850-15.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2677844
Dias Vieira Braga M, Stoye J. Sorting linear genomes with rearrangements and indels. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 2015;12(3):500-506.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2726366
Viduani Martinez FH, Feijão P, Dias Vieira Braga M, Stoye J. On the family-free DCJ distance and similarity. Algorithms for Molecular Biology. 2015;10: 13.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2715682
Henning P, Kuich JL, Hoffmann N, Stefan K. Maui-VIA: a user-friendly software for visual identification, alignment, correction, and quantification of gas chromatography–mass spectrometry data. Frontiers in Bioengineering and Biotechnology. 2015;2(84).
PUB | DOI | PubMed | Europe PMC
 
2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2766708
Chen C, Bartenhagen C, Gombert M, et al. Next-generation-sequencing of recurrent childhood high hyperdiploid acute lymphoblastic leukemia reveals mutations typically associated with high risk patients. Leukemia research. 2015.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764612
Wittler R, Marschall T, Schönhuth A, Makinen V. Repeat- and error-aware comparison of deletions. Bioinformatics. 2015;31(18):2947-2954.
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2015 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2757497
Holley G, Wittler R, Stoye J. Bloom Filter Trie - a data structure for pan-genome storage. In: Proceedings of WABI 2015. LNBI. Vol 9289. 2015: 217-230.
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2015 | Bielefelder E-Dissertation | PUB-ID: 2786037
Hilker R. Development of a read mapping analysis software and computational pan genome analysis of 20 Pseudomonas aeruginosa strains. Bielefeld: Bielefeld University; 2015.
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2015 | Konferenzband | Veröffentlicht | PUB-ID: 2780229
Meidanis J, Stoye J, eds. Proceedings of the 13th Annual Research in Computational Molecular Biology (RECOMB) Satellite Workshop on Comparative Genomics: Bioinformatics. BMC Bioinformatics. 2015;16(Supplement 14).
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2015 | Konferenzband | Veröffentlicht | PUB-ID: 2780232
Meidanis J, Stoye J, eds. Proceedings of the 13th Annual Research in Computational Molecular Biology (RECOMB) Satellite Workshop on Comparative Genomics: Genomics. BMC Genomics. 2015;16(Supplement 10).
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2014 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2684241
Viduani Martinez FH, Feijão P, Dias Vieira Braga M, Stoye J. On the family-free DCJ distance. In: Brown D, Morgenstern B, eds. Algorithms in Bioinformatics. WABI 2014. Lecture Notes in Bioinformatics. Vol 8701. Berlin ; Heidelberg: Springer Verlag; 2014: 174-186.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2687033
Dörr D, Stoye J, Böcker S, Jahn K. Identifying Gene Clusters by Discovering Common Intervals in Indeterminate Strings. BMC Genomics. 2014;15(Suppl. 6: Proc. of RECOMB-CG 2014):S2.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2685362
Lechner M, Hernandez-Rosales M, Dörr D, et al. Orthology Detection Combining Clustering and Synteny for Very Large Datasets. PLoS ONE. 2014;9(8):e105015.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2689773
Jünemann S, Prior K, Albersmeier A, et al. GABenchToB: A Genome Assembly Benchmark Tuned on Bacteria and Benchtop Sequencers. PLOS ONE. 2014;9(9):e107014.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Bielefelder E-Dissertation | PUB-ID: 2723541
Ander C. Bioinformatic methods for the analysis and comparison of metagenomes and metatranscriptomes. Bielefeld: Universitätsbibliothek Bielefeld; 2014.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2674387
Hilker R, Stadermann KB, Doppmeier D, et al. ReadXplorer - Visualization and Analysis of Mapped Sequences. Bioinformatics. 2014;30(16):2247-2254.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2665038
Schwientek P, Neshat A, Kalinowski J, et al. Improving the genome annotation of the acarbose producer Actinoplanes sp. SE50/110 by sequencing enriched 5'-ends of primary transcripts. Journal of Biotechnology. 2014;190:85-95.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2685988
Jakobi T, Brinkrolf K, Tauch A, et al. Discovery of transcription start sites in the Chinese hamster genome by next-generation RNA sequencing. Journal of Biotechnology. 2014;190:64-75.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2690122
Luhmann N, Chauve C, Stoye J, Wittler R. Scaffolding of Ancient Contigs and Ancestral Reconstruction in a Phylogenetic Framework. In: Sérgio C, ed. Proc. of BSB 2014. LNBI. Vol 8826. Springer Verlag; 2014: 135-143.
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2014 | Bielefelder E-Dissertation | PUB-ID: 2677466
Hoffmann N. Computational methods for high-throughput metabolomics. Bielefeld: Universität Bielefeld; 2014.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2691246
Fueller E, Schaefer D, Fischer U, et al. Genomic Inverse PCR for Exploration of Ligated Breakpoints (GIPFEL), a New Method to Detect Translocations in Leukemia. PloS one. 2014;9(8):104419.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Lexikoneintrag | Veröffentlicht | PUB-ID: 2693552
Stoye J. Suffix Tree Construction. In: Kao M-Y, ed. Encyclopedia of Algorithms. Springer Verlag; 2014.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2693409
Fredrich E, Ander C, Stoye J, Brune I, Tauch A. Metatranskriptomik der Mikrobiota aus der menschlichen Achselhöhle. BIOspektrum. 2014;20(5):294-296.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2643941
Hoffmann N, Wilhelm M, Doebbe A, Niehaus K, Stoye J. BiPACE 2D – Graph-based multiple alignment for comprehensive two-dimensional gas chromatography–mass spectrometry. Bioinformatics. 2014;30(7):988-995.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2691732
Klippel B, Sahm K, Basner A, et al. Carbohydrate-active enzymes identified by metagenomic analysis of deep-sea sediment bacteria. Extremophiles. 2014;18(5):853-863.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2691279
Binder V, Bartenhagen C, Okpanyi V, et al. A New Workflow for Whole-Genome Sequencing of Single Human Cells. Human mutation. 2014.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2665333
Henrich B, Rumming M, Sczyrba A, et al. Mycoplasma salivarium as a Dominant Coloniser of Fanconi Anaemia Associated Oral Carcinoma. PLoS ONE. 2014;9(3):e92297.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Bielefelder E-Dissertation | PUB-ID: 2673418
Mascher M. POPSEQ Anchoring and ordering contig assemblies from next generation sequencing data by population sequencing. Bielefeld: Universität Bielefeld; 2014.
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2013 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2611641
Dias Vieira Braga M, Stoye J. Restricted DCJ-Indel Model Revisited. In: Setubal JC, Almeida NF, eds. Advances in Bioinformatics and Computational Biology. BSB 2013. Lecture Notes in Bioinformatics. Vol 8213. Cham: Springer Verlag; 2013: 36-46.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2611630
Willing E, Zaccaria S, Dias Vieira Braga M, Stoye J. On the Inversion-Indel Distance. BMC Bioinformatics. 2013;14(Suppl 15: Proc. of RECOMB-CG 2013): S3.
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2013 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2611648
Dias Vieira Braga M, Chauve C, Dörr D, et al. The Potential of Family-Free Genome Comparison. In: Chauve C, El-Mabrouk N, Tannier E, eds. Models and Algorithms for Genome Evolution. Computational Biology Series. Vol 19. Springer Verlag; 2013: 287-307.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2575011
Ander C, Schulz-Trieglaff OB, Stoye J, Cox AJ. metaBEETL: high-throughput analysis of heterogeneous microbial populations from shotgun DNA sequences. BMC Bioinformatics. 2013;14(Suppl 5: Proc. of RECOMB-Seq 2013):S2.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2555342
He P, Hao K, Blom J, et al. Genome sequence of the plant growth promoting strain Bacillus amyloliquefaciens subsp. plantarum B9601-Y2 and expression of mersacidin and other secondary metabolites. Journal of biotechnology. 2013;164(2):281-291.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2641228
Jünemann S, Sedlazeck FJ, Prior K, et al. Corrigendum: Updating benchtop sequencing performance comparison. Nature biotechnology. 2013;31(12):1148.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2492825
Reuther S, Schmetzer H, Schuster FR, et al. In vitro-induced response patterns of antileukemic T cells: characterization by spectratyping and immunophenotyping. Clinical and Experimental Medicine. 2013;13(1):29-48.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2611643
Bergeron A, Stoye J. The Genesis of the DCJ Formula. In: Chauve C, El-Mabrouk N, Tannier E, eds. Models and Algorithms for Genome Evolution. Computational Biology Series. Vol 19. Springer Verlag; 2013: 63-81.
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2013 | Bielefelder E-Dissertation | PUB-ID: 2604883
Blom J. Comparative genomics on gene and single nucleotide level. Bielefeld: Universitätsbibliothek; 2013.
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2013 | Bielefelder E-Dissertation | PUB-ID: 2594322
Janowski SJ. VANESA - A bioinformatics software application for the modeling, visualization, analysis, and simulation of biological networks in systems biology applications. Bielefeld: Bielefeld University; 2013.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2575361
Krell P, Reuther S, Fischer U, et al. Next-generation-sequencing-spectratyping reveals public T-cell receptor repertoires in pediatric very severe aplastic anemia and identifies a beta chain CDR3 sequence associated with hepatitis-induced pathogenesis. Haematologica. 2013;98(9):1388-1396.
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2013 | Lexikoneintrag | Veröffentlicht | PUB-ID: 2577323
Gerlach W, Stoye J. Taxonomic classification of metagenomic shotgun sequences with CARMA3. In: Nelson KE, ed. Encyclopedia of Metagenomics. Springer Verlag; 2013.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2625914
Bergmann T, Maeder U, Fiebich M, Dickob M, Nattkemper TW, Anselmetti D. Categorization of two-photon microscopy images of human cartilage into states of osteoarthritis. Osteoarthritis And Cartilage. 2013;21(8):1074-1082.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2566922
Jünemann S, Sedlazeck FJ, Prior K, et al. Updating benchtop sequencing performance comparison. Nature Biotechnology. 2013;31(4):294-296.
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2013 | Konferenzband | Veröffentlicht | PUB-ID: 2616537
Darling A, Stoye J, eds. Algorithms in Bioinformatics. Lecture Notes in Bioinformatics. 2013;8126.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2611633
Jahn K, Winter S, Stoye J, Böcker S. Statistics for approximate gene clusters. BMC Bioinformatics. 2013;14(Suppl 15: Proc. of RECOMB-CG 2013):S14.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548236
Schwientek P, Wendler S, Neshat A, et al. Comparative RNA-sequencing of the acarbose producer Actinoplanes sp. SE50/110 cultivated in different growth media. Journal of Biotechnology. 2013;167(2):166-177.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2548286
Luque-Almagro VM, Acera F, Igeño MI, et al. Draft whole genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344. Environmental Microbiology. 2013;15(1):253-270.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2552092
Wittler R. Unraveling overlapping deletions by agglomerative clustering. BMC Genomics. 2013;14(Suppl 1):S12.
PUB | Dateien verfügbar | DOI | WoS | PubMed | Europe PMC
 
2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529309
Bolzan de Campos S, Youn J-W, Farina R, et al. Changes in Root Bacterial Communities Associated to Two Different Development Stages of Canola (*Brassica napus* L. var oleifera) Evaluated through Next-Generation Sequencing. Microbial Ecology. 2013;65(3):593-601.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2659331
Feijão P, Meidanis J. Extending the Algebraic Formalism for Genome Rearrangements to Include Linear Chromosomes. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 2013;10(4):819-831.
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2013 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2529202
Zakrzewski M, Bekel T, Ander C, et al. MetaSAMS - A novel software platform for taxonomic classification, functional annotation and comparative analysis of metagenome datasets. Journal of Biotechnology. 2013;167(2):156-165.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2560353
Dörr D, Gronau I, Moran S, Yavneh I. Stochastic errors vs. modeling errors in distance based phylogenetic reconstructions. Algorithms for Molecular Biology. 2012;7(1):22.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2512642
Dörr D, Thévenin A, Stoye J. Gene family assignment-free comparative genomics. BMC Bioinformatics. 2012;13(Suppl 19: Proc. of RECOMB-CG 2012):S3.
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2012 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2498160
Schröder J, Maus I, Meyer K, et al. Complete genome sequence, lifestyle, and multi-drug resistance of the human pathogen Corynebacterium resistens DSM 45100 isolated from blood samples of a leukemia patient. BMC Genomics. 2012;13(1): 141.
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