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769 Publikationen

2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900055
Plassmeier, Jens, Li, Youyuan, Rückert, Christian, and Sinskey, Anthony J. “Metabolic Engineering Corynebacterium glutamicum to Produce Triacylglycerols.”. Metab Eng 33 (2016): 86-97.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2787257
Schwichtenberg, Katrin, Wenke, Torsten, Zakrzewski, Falk, Seibt, Kathrin, Minoche, Andre, Dohm, Juliane, Weisshaar, Bernd, Himmelbauer, Heinz, and Schmidt, Thomas. “Diversification, Evolution and Methylation of Short Interspersed Nuclear Element families in sugar beet and related Amaranthaceae species”. The Plant Journal 85.2 (2016): 229-244.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2775257
Rückert, Christian, Eimer, Janine, Winkler, Anika, and Tauch, Andreas. “Complete Genome Sequence of the Type Strain Corynebacterium mustelae DSM 45274, Isolated from Various Tissues of a Male Ferret with Lethal Sepsis”. Genome announcements 3.5 (2015).
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2753051
Rückert, Christian, Albersmeier, Andreas, Winkler, Anika, and Tauch, Andreas. “Complete Genome Sequence of Corynebacterium kutscheri DSM 20755, a Corynebacterial Type Strain with Remarkably Low G+C Content of Chromosomal DNA”. Genome announcements 3.3 (2015).
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2765190
Rückert, Christian, Kriete, Martin, Jaenicke, Sebastian, Winkler, Anika, and Tauch, Andreas. “Virulence Factor Genes Detected in the Complete Genome Sequence of Corynebacterium uterequi DSM 45634, Isolated from the Uterus of a Maiden Mare”. Genome announcements 3.4 (2015).
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2761035
Arnold, Martin, Wibberg, Daniel, Blom, Jochen, Schatschneider, Sarah, Winkler, Anika, Kutter, Yvonne, Rückert, Christian, Albersmeier, Andreas, Albaum, Stefan, Goesmann, Alexander, Zange, Sabine, Heesemann, Jürgen, Pühler, Alfred, Hogardt, Michael, and Vorhölter, Frank-Jörg. “Draft Genome Sequence of Pseudomonas aeruginosa Strain WS136, a Highly Cytotoxic ExoS-Positive Wound Isolate Recovered from Pyoderma Gangrenosum”. Genome announcements 3.4 (2015).
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2765197
Rückert, Christian, Kriete, Martin, Jaenicke, Sebastian, Winkler, Anika, and Tauch, Andreas. “Complete Genome Sequence of the Type Strain Corynebacterium testudinoris DSM 44614, Recovered from Necrotic Lesions in the Mouth of a Tortoise”. Genome announcements 3.4 (2015).
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2728042
Merten, Madlen, Brinkrolf, Karina, Albersmeier, Andreas, Kutter, Yvonne, Rückert, Christian, and Tauch, Andreas. “Complete Genome Sequence and Annotation of Corynebacterium singulare DSM 44357, Isolated from a Human Semen Specimen”. Genome Announcements 3.2 (2015).
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2769395
Rückert, Christian, Eimer, Janine, Winkler, Anika, and Tauch, Andreas. “Complete Genome Sequence of the Type Strain Corynebacterium epidermidicanis DSM 45586, Isolated from the Skin of a Dog Suffering from Pruritus”. Genome announcements 3.4 (2015).
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2753057
Rückert, Christian, Albersmeier, Andreas, Winkler, Anika, and Tauch, Andreas. “Complete Genome Sequence of Corynebacterium camporealensis DSM 44610, Isolated from the Milk of a Manchega Sheep with Subclinical Mastitis”. Genome announcements 3.3 (2015).
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2782605
Rupp, Oliver, Brinkrolf, Karina, Buerth, Christoph, Kunigo, Maya, Schneider, Jessica, Jaenicke, Sebastian, Goesmann, Alexander, Pühler, Alfred, Jaeger, Karl-Erich, and Ernst, Joachim F. “The structure of the Cyberlindnera jadinii genome and its relation to Candida utilis analyzed by the occurrence of single nucleotide polymorphisms”. Journal of Biotechnology 211 (2015): 20-30.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2758144
Wibberg, Daniel, Rupp, Oliver, Jelonek, Lukas, Kröber, Magdalena, Verwaaijen, Bart, Blom, Jochen, Winkler, Anika, Goesmann, Alexander, Grosch, Rita, Pühler, Alfred, and Schlüter, Andreas. “Improved genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB 7/3/14 as established by deep mate-pair sequencing on the MiSeq (Illumina) system”. Journal of Biotechnology 203 (2015): 19-21.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2768627
Eikmeyer, Felix Gregor, Heinl, Stefan, Marx, Hans, Pühler, Alfred, Grabherr, Reingard, and Schlüter, Andreas. “Identification of Oxygen-Responsive Transcripts in the Silage Inoculant Lactobacillus buchneri CD034 by RNA Sequencing”. PLoS ONE 10.7 (2015): e0134149.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2775617
Stadermann, Kai Bernd, Weisshaar, Bernd, and Holtgräwe, Daniela. “SMRT sequencing only de novo assembly of the sugar beet (Beta vulgaris) chloroplast genome”. BMC Bioinformatics 16 (2015): 295.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2721868
Persicke, Marcus, Albersmeier, Andreas, Bednarz, Hanna, Niehaus, Karsten, Kalinowski, Jörn, and Rückert, Christian. “Genome sequence of the soil bacterium Corynebacterium callunae type strain DSM 20147T”. Standards in Genomic Sciences 10 (2015): 5.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2717880
Schierenbeck, Lisa, Ries, David, Rogge, Kristin, Grewe, Sabrina, Weisshaar, Bernd, and Kruse, Olaf. “Fast forward genetics to identify mutations causing a high light tolerant phenotype in Chlamydomonas reinhardtii by whole-genome-sequencing”. BMC Genomics 16 (2015): 57.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2722382
Stolze, Yvonne, Zakrzewski, Martha, Maus, Irena, Eikmeyer, Felix Gregor, Jaenicke, Sebastian, Rottmann, Nils, Siebner, Clemens, Pühler, Alfred, and Schlüter, Andreas. “Comparative metagenomics of biogas-producing microbial communities from production-scale biogas plants operating under wet or dry fermentation conditions”. Biotechnology for Biofuels 8 (2015): 14.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2771746
Rückert, Christian, Leipoldt, Franziska, Zeyhle, Philipp, Fenical, William, Jensen, Paul R, Kalinowski, Jörn, Heide, Lutz, and Kaysser, Leonard. “Complete Genome Sequence of Streptomyces sp. CNQ-509, a Prolific Producer of Meroterpenoid Chemistry”. Journal of Biotechnology 216 (2015): 140-141.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764063
Minoche, Andre E, Dohm, Juliane C, Schneider, Jessica, Holtgräwe, Daniela, Viehöver, Prisca, Montfort, Magda, Rosleff Sörensen, Thomas, Weisshaar, Bernd, and Himmelbauer, Heinz. “Exploiting single-molecule transcript sequencing for eukaryotic gene prediction”. Genome Biology 16 (2015): 184.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2771555
Müller, Christine, Birmes, Franziska S., Rückert, Christian, Kalinowski, Jörn, and Fetzner, Susanne. “Rhodococcus erythropolis BG43 genes mediating Pseudomonas aeruginosa quinolone signal degradation and virulence factor attenuation”. Applied and Environmental Microbiology 81.22 (2015): 7720-7729.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2770216
Kleinbölting, Nils, Huep, Gunnar, Appelhagen, Ingo, Viehöver, Prisca, Li, Yong, and Weisshaar, Bernd. “The structural features of thousands of T-DNA insertion sites are consistent with a double-strand break repair based insertion mechanism”. Molecular Plant 8.11 (2015): 1651-1664.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764512
Rückert, Christian, Birmes, Franziska S, Müller, Christine, Niewerth, Heiko, Winkler, Anika, Fetzner, Susanne, and Kalinowski, Jörn. “Complete genome sequence of Rhodococcus erythropolis BG43 (DSM 46869), a degrader of Pseudomonas aeruginosa quorum sensing signal molecules”. Journal of biotechnology 211 (2015): 99-100.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2756434
Oelschlägel, Michel, Rückert, Christian, Kalinowski, Jörn, Schmidt, Gert, Schlömann, Michael, and Tischler, Dirk. “Sphingopyxis fribergensis sp. nov., a soil bacterium with the ability to degrade styrene and phenylacetic acid”. International journal of systematic and evolutionary microbiology 65.Part 9 (2015): 3008-3015.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2735160
Kurosawa, Kazuhiko, Plassmeier, Jens, Kalinowski, Jörn, Rückert, Christian, and Sinskey, Anthony J. “Engineering L-arabinose metabolism in triacylglycerol-producing Rhodococcus opacus for lignocellulosic fuel production”. Metabolic engineering 30 (2015): 89-95.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2689771
Unthan, Simon, Baumgart, Meike, Radek, Andreas, Herbst, Marius, Siebert, Daniel, Brühl, Natalie, Bartsch, Anna, Bott, Michael, Wiechert, Wolfgang, Marin, Kay, Hans, Stephan, Krämer, Reinhard, Seibold, Gerd, Frunzke, Julia, Kalinowski, Jörn, Rückert, Christian, Wendisch, Volker F., and Noack, Stephan. “Chassis organism from Corynebacterium glutamicum – a top-down approach to identify and delete irrelevant gene clusters”. Biotechnology Journal 10.2 (2015): 290-301.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2709783
Ortseifen, Vera, Winkler, Anika, Albersmeier, Andreas, Wendler, Sergej, Pühler, Alfred, Kalinowski, Jörn, and Rückert, Christian. “Complete Genome Sequence of the Actinobacterium Streptomyces glaucescens GLA.O (DSM 40922) consisting of a linear chromosome and one linear plasmid”. Journal of Biotechnology 194 (2015): 81-83.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2719877
Rückert, Christian, Albersmeier, Andreas, Busche, Tobias, Jaenicke, Sebastian, Winkler, Anika, Friðjónsson, Ólafur H, Hreggviðsson, Guðmundur Óli, Lambert, Christophe, Badcock, Daniel, Bernaerts, Kristel, Anne, Jozef, Economou, Anastassios, and Kalinowski, Jörn. “Complete genome sequence of Streptomyces lividans TK24”. Journal of Biotechnology 199 (2015): 21-22.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2719679
Vinardell, JM, Acosta-Jurado, S, Göttfert, M, Zehner, S, Becker, A, Baena-Ropero, I, Blom, J, Crespo-Rivas, JC, Goesmann, A, Jaenicke, Sebastian, Krol, E, McIntosh, M, Margaret, I, Pérez-Montaño, F, Schneiker-Bekel, Susanne, Serrania, J, Szczepanowski, R, Buendia-Claveria, AM, Lloret, J, Bonilla, I, Pühler, Alfred, Ruiz-Sainz, JE, and Weidner, Stefan. “The Sinorhizobium fredii HH103 genome: a comparative analysis with S. fredii strains differing in their symbiotic behaviour with soybean”. Molecular Plant-Microbe Interactions 28.7 (2015): 811-824.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2764185
Schafhauser, Thomas, Wibberg, Daniel, Rückert, Christian, Winkler, Anika, Flor, Liane, van Pée, Karl-Heinz, Fewer, David P., Sivonen, Kaarina, Jahn, Linda, Ludwig-Müller, Jutta, Caradec, Thibault, Jacques, Philippe, Huijbers, Mieke M. E., van Berkel, Willem J. H., Weber, Tilmann, Wohlleben, Wolfgang, and Kalinowski, Jörn. “Draft genome sequence of Talaromyces islandicus ("Penicillium islandicum") WF-38-12, a neglected mold with significant biotechnological potential”. Journal of Biotechnology 211 (2015): 101-102.
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2015 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2732031
Appelhagen, Ingo, Nordholt, Niclas, Seidel, Thorsten, Spelt, Kees, Koes, Ronald, Quattrochio, Francesca, Sagasser, Martin, and Weisshaar, Bernd. “Transparent Testa 13 is a tonoplast P3A-ATPase required for vacuolar deposition of proanthocyanidins in Arabidopsis thaliana seeds”. The Plant Journal 82.5 (2015): 840-849.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2696778
Stracke, Ralf, Holtgräwe, Daniela, Schneider, Jessica, Pucker, Boas, Rosleff Sörensen, Thomas, and Weisshaar, Bernd. “Genome-wide identification and characterisation of R2R3-MYB genes in sugar beet ( Beta vulgaris )”. BMC Plant Biology 14.1 (2014): 249.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2699085
Holtgräwe, Daniela, Rosleff Sörensen, Thomas, Viehöver, Prisca, Schneider, Jessica, Schulz, Britta, Borchardt, Dietrich, Kraft, Thomas, Himmelbauer, Heinz, and Weisshaar, Bernd. “Reliable In Silico Identification of Sequence Polymorphisms and Their Application for Extending the Genetic Map of Sugar Beet (Beta vulgaris)”. PLoS ONE 9.10 (2014): e110113.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2700166
Huep, Gunnar, Kleinbölting, Nils, and Weisshaar, Bernd. “An easy-to-use primer design tool to address paralogous loci and T-DNA insertion sites in the genome of Arabidopsis thaliana”. Plant Methods 10 (2014): 28.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2699107
Rebets, Yuriy, Tokovenko, Bogdan, Lushchyk, Igor, Rückert, Christian, Zaburannyi, Nestor, Bechthold, Andreas, Kalinowski, Jörn, and Luzhetskyy, Andriy. “Complete genome sequence of producer of the glycopeptide antibiotic Aculeximycin Kutzneria albida DSM 43870T, a representative of minor genus of Pseudonocardiaceae”. BMC genomics 15.1 (2014): 885.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2692360
Tippelt, Anna, Möllmann, Sabrina, Albersmeier, Andreas, Jaenicke, Sebastian, Rückert, Christian, and Tauch, Andreas. “Mycolic Acid Biosynthesis Genes in the Genome Sequence of Corynebacterium atypicum DSM 44849”. Genome announcements 2.4 (2014).
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2682811
Lübke, Nils-Christian, Wolf, Timo, Braun, Robert, Rückert, Christian, and Kalinowski, Jörn. “Vom Schärfesensor zur mikrobiellen Brennstoffzelle”. BIOspektrum 20.4 (2014): 468-469.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2679399
Neshat, Armin, Mentz, Almut, Rückert, Christian, and Kalinowski, Jörn. “Transcriptome sequencing revealed the transcriptional organization at ribosome-mediated attenuation sites in Corynebacterium glutamicum and identified a novel attenuator involved in aromatic amino acid biosynthesis”. Journal of biotechnology 190 (2014): 55-63.
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2014 | Bielefelder E-Dissertation | PUB-ID: 2770185
Nolla Ardevol, Vimac. Anaerobic digestion of the microalga Spirulina at alkaline conditions (pH~10; 2.0 M Na+): biogas production and metagenome analysis. Bielefeld: Bielefeld University, 2014.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2674387
Hilker, Rolf, Stadermann, Kai Bernd, Doppmeier, Daniel, Kalinowski, Jörn, Stoye, Jens, Straube, Jasmin, Winnebald, Jörn, and Goesmann, Alexander. “ReadXplorer - Visualization and Analysis of Mapped Sequences”. Bioinformatics 30.16 (2014): 2247-2254.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2678005
Heitkam, Tony, Holtgräwe, Daniela, Dohm, Juliane C., Minoche, André E., Himmelbauer, Heinz, Weisshaar, Bernd, and Schmidt, Thomas. “Profiling of extensively diversified plant LINEs reveals distinct plant-specific subclades”. The Plant Journal 79.3 (2014): 385-397.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2665038
Schwientek, Patrick, Neshat, Armin, Kalinowski, Jörn, Klein, Andreas, Rückert, Christian, Schneiker-Bekel, Susanne, Wendler, Sergej, Stoye, Jens, and Pühler, Alfred. “Improving the genome annotation of the acarbose producer Actinoplanes sp. SE50/110 by sequencing enriched 5'-ends of primary transcripts”. Journal of Biotechnology 190 (2014): 85-95.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2647992
Flinspach, Katrin, Rückert, Christian, Kalinowski, Jörn, Heide, Lutz, and Apel, Alexander Kristian. “Draft Genome Sequence of Streptomyces niveus NCIMB 11891, Producer of the Aminocoumarin Antibiotic Novobiocin”. Genome announcements 2.1 (2014): e01146-13.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2653196
Wilson, Micheal C, Mori, Tetsushi, Rückert, Christian, Uria, Agustinus R, Helf, Maximilian J, Takada, Kentaro, Gernert, Christine, Steffens, Ursula A E, Heycke, Nina, Schmitt, Susanne, Rinke, Christian, Helfrich, Eric J N, Brachmann, Alexander O, Gurgui, Cristian, Wakimoto, Toshiyuki, Kracht, Matthias, Crüsemann, Max, Hentschel, Ute, Abe, Ikuro, Matsunaga, Shigeki, Kalinowski, Jörn, Takeyama, Haruko, and Piel, Jörn. “An environmental bacterial taxon with a large and distinct metabolic repertoire”. Nature 506.7486 (2014): 58-62.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2705365
Tippelt, Anna, Albersmeier, Andreas, Brinkrolf, Karina, Rückert, Christian, Fernández-Natal, Isabel, Soriano, Francisco, and Tauch, Andreas. “Complete Genome Sequence of Corynebacterium ureicelerivorans DSM 45051, a Lipophilic and Urea-Splitting Isolate from the Blood Culture of a Septicemia Patient”. Genome announcements 2.6 (2014).
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2643981
Bolger, Marie E, Weisshaar, Bernd, Scholz, Uwe, Stein, Nils, Usadel, Björn, and Mayer, Klaus FX. “Plant genome sequencing — applications for crop improvement”. Current Opinion in Biotechnology 26.4 (2014): 31-37.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2685988
Jakobi, Tobias, Brinkrolf, Karina, Tauch, Andreas, Noll, Thomas, Stoye, Jens, Pühler, Alfred, and Goesmann, Alexander. “Discovery of transcription start sites in the Chinese hamster genome by next-generation RNA sequencing”. Journal of Biotechnology 190 (2014): 64-75.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2693289
Al-Dilaimi, Arwa, Albersmeier, Andreas, Kalinowski, Jörn, and Rückert, Christian. “Complete Genome Sequence of Corynebacterium vitaeruminis DSM 20294T, isolated from the cow rumen as a vitamin B producer”. Journal of Biotechnology 189 (2014): 70-71.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2693296
Walter, Frederik, Albersmeier, Andreas, Kalinowski, Jörn, and Rückert, Christian. “Complete Genome Sequence of Corynebacterium casei LMG S-19264T (=DSM 44701T), isolated from a smear-ripened cheese”. Journal of Biotechnology 189 (2014): 76-77.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2674171
Dubos, Christian, Kelemen, Zsolt, Sebastian, Alvaro, Bülow, Lorenz, Huep, Gunnar, Xu, Wenjia, Grain, Damaris, Salsac, Fabien, Brousse, Cecile, Lepiniec, Loïc, Weisshaar, Bernd, Contreras-Moreira, Bruno, and Hehl, Reinhard. “Integrating bioinformatic resources to predict transcription factors interacting with cis-sequences conserved in co-regulated genes”. BMC genomics 15.1 (2014): 317.
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2014 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2631517
Hackmann, Christian, Korneli, Christin, Kutyniok, Magdalene, Köster, Tino, Wiedenlübbert, Matthias, Müller, Caroline, and Staiger, Dorothee. “Salicylic acid-dependent and -independent impact of an RNA-binding protein on plant immunity”. Plant, Cell & Environment 37.3 (2014): 696-706.
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