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484 Publikationen

2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932884
H. Oey, et al., “Whole-genome sequence of the bovine blood fluke Schistosoma bovis supports interspecific hybridization with S. haematobium”, PLOS Pathogens, vol. 15, 2019, pp. e1007513, : e1007513.
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2908574
N. Luhmann, et al., “The SCJ Small Parsimony Problem for Weighted Gene Adjacencies”, IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol. 16, 2019, pp. 1364-1373.
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2019 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2936900 OA
R. Wittler, “Alignment- and reference-free phylogenomics with colored de Bruijn graphs”, Proceedings of WABI 2019, K. Huber and D. Gusfield, eds., LIPIcs, vol. 143, Dagstuhl, Germany: Schloss Dagstuhl--Leibniz-Zentrum fuer Informatik, 2019.
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2019 | Preprint | PUB-ID: 2935604 OA
R. Wittler, “Alignment- and reference-free phylogenomics with colored de-Bruijn graphs”, arXiv:1905.04165, 2019.
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2019 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2932883
D. Dörr and J. Stoye, “A Perspective on Comparative and Functional Genomics”, Bioinformatics and Phylogenetics, T. Warnow, ed., Computational Biology, vol. 29, Cham: Springer , 2019, pp.361-372.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919005 OA
T. Schulz, J. Stoye, and D. Dörr, “GraphTeams. A method for discovering spatial gene clusters in Hi-C sequencing data”, BMC Genomics, vol. 19, 2018, pp. 308, : 308.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919006 OA
D. Rubert, et al., “Computing the family-free DCJ similarity”, BMC Bioinformatics, vol. 19, 2018, pp. 152, : 152.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919012
S. Jaenicke, et al., “Flexible metagenome analysis using the MGX framework”, Microbiome, vol. 6, 2018, pp. 76, : 76.
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2018 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2913924
Y. Anselmetti, et al., “Comparative Methods for Reconstructing Ancient Genome Organization”, Comparative Genomics: Methods and Protocols, J.C. Setubal, J. Stoye, and P. Stadler, eds., Methods in Molecular Biology, vol. 1704, New York, NY: Humana Press, 2018, pp.343-362.
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2018 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2913921
T. Zekic, G. Holley, and J. Stoye, “Pan-genome Storage and Analysis Techniques”, Comparative Genomics. Methods and Protocols, J.C. Setubal, P. Stadler, and J. Stoye, eds., Methods in Molecular Biology, vol. 1704, New York: Springer Verlag, 2018, pp.29-53.
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2018 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2913922
D. Dörr, P. Feijão, and J. Stoye, “Family-Free Genome Comparison”, Comparative Genomics: Methods and Protocols, J.C. Setubal, P. Stadler, and J. Stoye, eds., Methods in Molecular Biology, vol. 1704, New York: Springer Verlag, 2018, pp.331-342.
PUB | DOI
 
2018 | Herausgeber*in Sammelwerk | Veröffentlicht | PUB-ID: 2913920
J.C. Setubal, P. Stadler, and J. Stoye, eds., Comparative Genomics: Methods and Protocols, Methods in Molecular Biology, vol. 1704, New York: Springer Verlag, 2018.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918481
N. Luhmann, et al., “Scaffolding of Ancient Contigs and Ancestral Reconstruction in a Phylogenetic Framework”, IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol. 15, 2018, pp. 2094-2100.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2912492
N. Luhmann, D. Dörr, and C. Chauve, “Comparative scaffolding and gap filling of ancient bacterial genomes applied to two ancient Yersinia pestis genomes”, Microbial Genomics, vol. 3, 2017, pp. e000123.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909057 OA
D. Rubert, et al., “Approximating the DCJ distance of balanced genomes in linear time”, Algorithms for Molecular Biology, vol. 12, 2017, pp. 3, : 3.
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2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2909409
L. Cunha, et al., “Fast and Simple Jumbled Indexing for Binary Run-Length Encoded Strings”, Proceedings of CPM 2017, LIPIcs, vol. 78, 2017, pp.19:1-19:9.
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2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2907587
G. Holley, et al., “Dynamic Alignment-Free and Reference-Free Read Compression”, Proceedings of RECOMB 2017, Lecture Notes in Bioinformatics, vol. 10229, 2017, pp.50-65.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909967
D. Dörr, et al., “New Genome Similarity Measures based on Conserved Gene Adjacencies”, Journal of Computational Biology, vol. 24, 2017, pp. 616-634.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900129 OA
G. Holley, R. Wittler, and J. Stoye, “Bloom Filter Trie: an alignment-free and reference-free data structure for pan-genome storage”, Algorithms for Molecular Biology, vol. 11, 2016, pp. 3, : 3.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901413 OA
K. Gorzolka, et al., “Spatio-Temporal Metabolite Profiling of the Barley Germination Process by MALDI MS Imaging”, PLOS ONE, vol. 11, 2016, pp. e0150208, : 0150208.
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