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484 Publikationen

2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932884
Oey, H., et al., 2019. Whole-genome sequence of the bovine blood fluke Schistosoma bovis supports interspecific hybridization with S. haematobium. PLOS Pathogens, 15(1), p e1007513: e1007513.
PUB | DOI | WoS | PubMed | Europe PMC
 
2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2908574
Luhmann, N., et al., 2019. The SCJ Small Parsimony Problem for Weighted Gene Adjacencies. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 16(4), p 1364-1373.
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2019 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2936900 OA
Wittler, R., 2019. Alignment- and reference-free phylogenomics with colored de Bruijn graphs. In K. Huber & D. Gusfield, eds. Proceedings of WABI 2019. LIPIcs. no.143 Dagstuhl, Germany: Schloss Dagstuhl--Leibniz-Zentrum fuer Informatik.
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2019 | Preprint | PUB-ID: 2935604 OA
Wittler, R., 2019. Alignment- and reference-free phylogenomics with colored de-Bruijn graphs. arXiv:1905.04165.
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2019 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2932883
Dörr, D., & Stoye, J., 2019. A Perspective on Comparative and Functional Genomics. In T. Warnow, ed. Bioinformatics and Phylogenetics. Computational Biology. no.29 Cham: Springer , pp. 361-372.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919005 OA
Schulz, T., Stoye, J., & Dörr, D., 2018. GraphTeams. A method for discovering spatial gene clusters in Hi-C sequencing data. BMC Genomics, 19(Suppl. 5), p 308: 308.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919006 OA
Rubert, D., et al., 2018. Computing the family-free DCJ similarity. BMC Bioinformatics, 19(Suppl. 6), p 152: 152.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919012
Jaenicke, S., et al., 2018. Flexible metagenome analysis using the MGX framework. Microbiome, 6(1), p 76: 76.
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2018 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2913924
Anselmetti, Y., et al., 2018. Comparative Methods for Reconstructing Ancient Genome Organization. In J. C. Setubal, J. Stoye, & P. Stadler, eds. Comparative Genomics: Methods and Protocols. Methods in Molecular Biology. no.1704 New York, NY: Humana Press, pp. 343-362.
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2018 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2913921
Zekic, T., Holley, G., & Stoye, J., 2018. Pan-genome Storage and Analysis Techniques. In J. C. Setubal, P. Stadler, & J. Stoye, eds. Comparative Genomics. Methods and Protocols. Methods in Molecular Biology. no.1704 New York: Springer Verlag, pp. 29-53.
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2018 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2913922
Dörr, D., Feijão, P., & Stoye, J., 2018. Family-Free Genome Comparison. In J. C. Setubal, P. Stadler, & J. Stoye, eds. Comparative Genomics: Methods and Protocols. Methods in Molecular Biology. no.1704 New York: Springer Verlag, pp. 331-342.
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2018 | Herausgeber*in Sammelwerk | Veröffentlicht | PUB-ID: 2913920
J. C. Setubal, P. Stadler, & J. Stoye, eds., 2018. Comparative Genomics: Methods and Protocols, Methods in Molecular Biology, no.1704, New York: Springer Verlag.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918481
Luhmann, N., et al., 2018. Scaffolding of Ancient Contigs and Ancestral Reconstruction in a Phylogenetic Framework. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 15(6), p 2094-2100.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2912492
Luhmann, N., Dörr, D., & Chauve, C., 2017. Comparative scaffolding and gap filling of ancient bacterial genomes applied to two ancient Yersinia pestis genomes. Microbial Genomics, 3(9), p e000123.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909057 OA
Rubert, D., et al., 2017. Approximating the DCJ distance of balanced genomes in linear time. Algorithms for Molecular Biology, 12(1), p 3: 3.
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2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2909409
Cunha, L., et al., 2017. Fast and Simple Jumbled Indexing for Binary Run-Length Encoded Strings. In Proceedings of CPM 2017. LIPIcs. no.78 pp. 19:1-19:9.
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2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2907587
Holley, G., et al., 2017. Dynamic Alignment-Free and Reference-Free Read Compression. In Proceedings of RECOMB 2017. Lecture Notes in Bioinformatics. no.10229 pp. 50-65.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909967
Dörr, D., et al., 2017. New Genome Similarity Measures based on Conserved Gene Adjacencies. Journal of Computational Biology, 24(6), p 616-634.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2900129 OA
Holley, G., Wittler, R., & Stoye, J., 2016. Bloom Filter Trie: an alignment-free and reference-free data structure for pan-genome storage. Algorithms for Molecular Biology, 11(1), p 3: 3.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901413 OA
Gorzolka, K., et al., 2016. Spatio-Temporal Metabolite Profiling of the Barley Germination Process by MALDI MS Imaging. PLOS ONE, 11(3), p e0150208: 0150208.
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