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485 Publikationen

2019 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2936900 OA
Wittler, R. (2019). “Alignment- and reference-free phylogenomics with colored de Bruijn graphs” in Proceedings of WABI 2019, Huber, K., and Gusfield, D. eds. LIPIcs, vol. 143, (Dagstuhl, Germany: Schloss Dagstuhl--Leibniz-Zentrum fuer Informatik).
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2019 | Preprint | PUB-ID: 2935604 OA
Wittler, R. (2019). Alignment- and reference-free phylogenomics with colored de-Bruijn graphs. arXiv:1905.04165.
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2019 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2932883
Dörr, D., and Stoye, J. (2019). “A Perspective on Comparative and Functional Genomics” in Bioinformatics and Phylogenetics, Warnow, T. ed. Computational Biology, vol. 29, (Cham: Springer ), 361-372.
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2019 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2932884
Oey, H., Zakrzewski, M., Gravermann, K., Young, N. D., Korhonen, P. K., Gobert, G. N., Nawaratna, S., Hasan, S., Martínez, D. M., You, H., et al. (2019). Whole-genome sequence of the bovine blood fluke Schistosoma bovis supports interspecific hybridization with S. haematobium. PLOS Pathogens 15:e1007513.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919005 OA
Schulz, T., Stoye, J., and Dörr, D. (2018). GraphTeams. A method for discovering spatial gene clusters in Hi-C sequencing data. BMC Genomics 19:308.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919006 OA
Rubert, D., Hoshino, E. A., Dias Vieira Braga, M., Stoye, J., and Martinez, F. H. V. (2018). Computing the family-free DCJ similarity. BMC Bioinformatics 19:152.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2918481
Luhmann, N., Chauve, C., Stoye, J., and Wittler, R. (2018). Scaffolding of Ancient Contigs and Ancestral Reconstruction in a Phylogenetic Framework. IEEE/ACM Transactions on Computational Biology and Bioinformatics 15, 2094-2100.
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2018 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2913921
Zekic, T., Holley, G., and Stoye, J. (2018). “Pan-genome Storage and Analysis Techniques” in Comparative Genomics. Methods and Protocols, Setubal, J. C., Stadler, P., and Stoye, J. eds. Methods in Molecular Biology, vol. 1704, (New York: Springer Verlag), 29-53.
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2018 | Sammelwerksbeitrag | Veröffentlicht | PUB-ID: 2913922
Dörr, D., Feijão, P., and Stoye, J. (2018). “Family-Free Genome Comparison” in Comparative Genomics: Methods and Protocols, Setubal, J. C., Stadler, P., and Stoye, J. eds. Methods in Molecular Biology, vol. 1704, (New York: Springer Verlag), 331-342.
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2018 | Herausgeber*in Sammelwerk | Veröffentlicht | PUB-ID: 2913920
Setubal, J. C., Stadler, P., and Stoye, J. eds. (2018). Comparative Genomics: Methods and Protocols. Methods in Molecular Biology, 1704, New York: Springer Verlag.
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2018 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2919012
Jaenicke, S., Albaum, S., Blumenkamp, P., Linke, B., Stoye, J., and Goesmann, A. (2018). Flexible metagenome analysis using the MGX framework. Microbiome 6:76.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909057 OA
Rubert, D., Feijão, P., Dias Vieira Braga, M., Stoye, J., and Martinez, F. H. V. (2017). Approximating the DCJ distance of balanced genomes in linear time. Algorithms for Molecular Biology 12:3.
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2017 | Zeitschriftenaufsatz | E-Veröff. vor dem Druck | PUB-ID: 2908574
Luhmann, N., Lafond, M., Thévenin, A., Ouangraoua, A., Wittler, R., and Chauve, C. (2017). The SCJ Small Parsimony Problem for Weighted Gene Adjacencies. IEEE/ACM Transactions on Computational Biology and Bioinformatics 14.
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2912492
Luhmann, N., Dörr, D., and Chauve, C. (2017). Comparative scaffolding and gap filling of ancient bacterial genomes applied to two ancient Yersinia pestis genomes. Microbial Genomics 3.
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2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2909409
Cunha, L., Dantas, S., Gagie, T., Wittler, R., Kowada, L., and Stoye, J. (2017). “Fast and Simple Jumbled Indexing for Binary Run-Length Encoded Strings” in Proceedings of CPM 2017 LIPIcs, vol. 78, 19:1-19:9.
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2017 | Konferenzbeitrag | Veröffentlicht | PUB-ID: 2907587
Holley, G., Wittler, R., Stoye, J., and Hach, F. (2017). “Dynamic Alignment-Free and Reference-Free Read Compression” in Proceedings of RECOMB 2017 Lecture Notes in Bioinformatics, vol. 10229, 50-65.
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2017 | Sammelwerksbeitrag | Im Druck | PUB-ID: 2913924
Anselmetti, Y., Luhmann, N., Bérard, S., Tannier, E., and Chauve, C. (In Press). “Comparative Methods for Reconstructing Ancient Genome Organization” in Comparative Genomics, Setubal, J. C., Stadler, P., and Stoye, J. eds. Methods in Molecular Biology (Springer Verlag).
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2017 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2909967
Dörr, D., Kowada, L. A. B., Soares de Araujo, F. E., Deshpande, S., Dantas, S., Moret, B. M. E., and Stoye, J. (2017). New Genome Similarity Measures based on Conserved Gene Adjacencies. Journal of Computational Biology 24, 616-634.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2901413 OA
Gorzolka, K., Kölling, J., Nattkemper, T. W., and Niehaus, K. (2016). Spatio-Temporal Metabolite Profiling of the Barley Germination Process by MALDI MS Imaging. PLOS ONE 11:0150208.
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2016 | Zeitschriftenaufsatz | Veröffentlicht | PUB-ID: 2905930
Winter, S., Jahn, K., Wehner, S., Kuchenbecker, L., Marz, M., Stoye, J., and Böcker, S. (2016). Finding approximate gene clusters with GECKO 3. Nucleic Acids Research 44, 9600-9610.
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